mRNA_H-elongata_contig9161.16620.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI) HSP 1 Score: 193 bits (491), Expect = 2.400e-60 Identity = 89/107 (83.18%), Postives = 98/107 (91.59%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWVS 333
NNIM+PKENK RKLMY+C+RC ++E A+S CVYRN++ITTAGNKLDIVQ DVVDDPTLQRSK+AICEKCNYNEAVFFQADEG KSQSLSLIFVCTNR CGHKWVS
Sbjct: 131 NNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA) HSP 1 Score: 143 bits (361), Expect = 2.820e-42 Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 330
NNI++PKEN+ R L YAC+RC ++E A SC VY N+++ T KLDIV DVV+DPTLQRSKH IC++CNY+EAVFFQAD+ KS SLSLIFVCT+ CG KWV
Sbjct: 8 NNILHPKENRTTRTLFYACNRCAYREEAGQSC-VYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A7S3HGL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGL0_9STRA) HSP 1 Score: 109 bits (273), Expect = 7.730e-29 Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSR--CTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 330
NN++YP+EN+ + L Y C + C + E S CV+ N+II + +L+++ +DV DPTLQRS+ C C +NEAVFFQA++ TKS +L+L+FVC N CGHKW+
Sbjct: 9 NNLLYPRENRQLKALEYYCKQNDCPYTEINLPSTCVFVNEIIKDSSTRLEVILSDVNKDPTLQRSRDINCTGCGFNEAVFFQAEQTTKSTALNLVFVCCN--CGHKWM 114
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI) HSP 1 Score: 107 bits (267), Expect = 6.300e-28 Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 327
NNI+YP+ENKA ++L YAC RC F E A+ SC VYRN+I TA + ++Q DV DPTL RSK C C + EAVFFQA + + ++L FVC N C H+W
Sbjct: 11 NNILYPRENKAEKRLEYACGRCDFSEDAEQSC-VYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA) HSP 1 Score: 108 bits (269), Expect = 6.950e-28 Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 4 PRSNNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 330
P+ N+ P+E + R LM C C ++E A +S VY N I +LDI+ ++ DDPTLQRS +CE CNY+EAV FQA+ G ++SLSLIFVC N C HKW+
Sbjct: 37 PQCGNMWQPREERTTRTLMLNCRNCGYEEPA-TSYKVYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A2I4F1N3_JUGRE (DNA-directed RNA polymerase subunit n=38 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I4F1N3_JUGRE) HSP 1 Score: 107 bits (266), Expect = 8.690e-28 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 327
NNI+YPKE+K + L+YAC C QEAA ++C VYRN+I + G + ++Q DV DPTL R+K C +CN+ EAVFFQA + ++L FVC N CGH+W
Sbjct: 11 NNILYPKEDKEQKILLYACRNCDHQEAADNNC-VYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCAECNHGEAVFFQAT-ARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A6P4PU27_GOSAR (DNA-directed RNA polymerase subunit n=7 Tax=Gossypium TaxID=3633 RepID=A0A6P4PU27_GOSAR) HSP 1 Score: 106 bits (264), Expect = 1.750e-27 Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 327
NNI+YPKE++ + L+YAC C QE A+++C VYRN++ +AG + I+Q DV DPTL R+K IC C + EAVFFQA + ++L FVC N CGH+W
Sbjct: 11 NNILYPKEDREQKILLYACRNCDHQEVAENNC-VYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQAT-ARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI) HSP 1 Score: 106 bits (264), Expect = 1.750e-27 Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 327
NNI+YPKE++ + L+YAC C QE A+ +C VYRN++ +AG + I+Q DV DPTL R+K IC C + EAVFFQA + ++L FVC N CGH+W
Sbjct: 11 NNILYPKEDREQKILLYACRNCDHQEVAEDNC-VYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQAT-ARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS) HSP 1 Score: 105 bits (263), Expect = 2.340e-27 Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 1
Query: 4 PRSNNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEG-TKSQSLSLIFVCTNRGCGHKWVS 333
P ++++YPKEN+ RKL+YAC C + E A +Y+N + GN L V + V DDPTL RS++A C+KC +NEAVFFQ+D ++ +L+LIFVC N C HKWV+
Sbjct: 5 PHDSSMLYPKENRNERKLLYACRLCRYTEYAPGQL-IYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A6J1AX74_9ROSI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6J1AX74_9ROSI) HSP 1 Score: 105 bits (263), Expect = 2.480e-27 Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 13 NNIMYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 327
NNI+YPKE++ + L+YAC C QE A ++C VYRN++ +AG + I+Q DV DPTL R+K IC C + EAVFFQA + ++L FVC N CGH+W
Sbjct: 11 NNILYPKEDREQKILLYACRNCDHQEVADNNC-VYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQAT-ARGEEGMTLFFVCCNPNCGHRW 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9161.16620.1 >prot_H-elongata_contig9161.16620.1 ID=prot_H-elongata_contig9161.16620.1|Name=mRNA_H-elongata_contig9161.16620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADback to top mRNA from alignment at H-elongata_contig9161:7832..8818- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9161.16620.1 ID=mRNA_H-elongata_contig9161.16620.1|Name=mRNA_H-elongata_contig9161.16620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=987bp|location=Sequence derived from alignment at H-elongata_contig9161:7832..8818- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9161:7832..8818- >mRNA_H-elongata_contig9161.16620.1 ID=mRNA_H-elongata_contig9161.16620.1|Name=mRNA_H-elongata_contig9161.16620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig9161:7832..8818- (Himanthalia elongata Himel1 dioecious)back to top |