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Homology
BLAST of mRNA_H-elongata_contig9017.16504.1 vs. uniprot
Match: D7G8E4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E4_ECTSI) HSP 1 Score: 306 bits (784), Expect = 5.680e-93 Identity = 223/563 (39.61%), Postives = 287/563 (50.98%), Query Frame = 1
Query: 55 RAERVWMRTGKWSEDDRELAEREIAGAILERQQTLVEGYVRERRRYLNRRVSAQREGYGTFQNSWIADESWGGGHIRRRNITEADKAAFREAVSRTKIVLKLLEVKI----LPPASCS---SSPGTISTVPSKKWKEQDRINY-ASLDKRDPTRRRSVFLRANSRAVGLKTFIGRGAHENDKDEKRSVYKVLRKSTEAYSDRVETYGGGATR--CRRVVGGGNNLVPWDIVYKGVVSVEAARMNTAALAVQIAFRRRMFHRFVWAQGYLRRPMHAFAIFKRVSRPLLEGGNLDVTAVASGQRMDITPGDKGAADVGGGGEDWSKINSLDTWPEASGFCPSAPFHTHAVDVAFLEYRRWCHQASTVVPEARASTSAENEVTVV------LDISSTLQVAPPPRPRG-----------SPLFERKYAIRTEAMRSTLLALHLPFMSGGIDAAIEDLSRTILTEAL----------------VGSGIKRVTSFNGVTCKSRTDTNSGVERAKIQSNRTRSIMQCRQGISFVKWYEWWVRHLPYDPCSATCLLKTIQCAKTLHAAEI 1614
RA+ R GKW+++DR+LAE E+AG I++ QQ VEGYV+ERRRYL+RRVSAQR+G+G FQ + G G + EA KA F EAV+RTK+VLKLLE K LP S ++ GT V + + S +RDP + S N R + K + +DK E + KVLR +TEAYSDRV GGGATR R G G V +G E ARM+ AA VQ+AFR+RMFHRFVWAQ YLR P HA+ +FKR P+ GG ADV + +N +D WPE GFCPS P H HA D FL Y R C S + + A+T+ + E T S+ V+ P RP + FERKY IRT A+R + L +PF+ G +DAA+EDL +TI ++ V SG++ + G S T G R + R +SF KWY WW+RHLP+DP S CLLKT++CAK LHA+EI
Sbjct: 94 RAKMARKRVGKWNDEDRDLAELEMAGLIIQEQQEFVEGYVQERRRYLSRRVSAQRDGHGGFQREEVPT---GPGGRWSKKAMEAKKAEFSEAVNRTKVVLKLLEAKTAASSLPQPSGGDGDAAGGTAGAVGRNPSGDSPGVRGDGSHRRRDP--QHSPPKANNDRRIKSKACVS-----DDKRETWDMKKVLRTATEAYSDRVGKQGGGATRINANRQSGAGCGATA---VGRGG---ERARMSAAAQTVQVAFRQRMFHRFVWAQAYLRGPTHAYEVFKRCL-PMPRGGXXXXXXXXXXXXXXXXLRPAALADVAS-----AAVNLVDAWPELPGFCPSFPHHVHAADPIFLRYLRSCTPKSYDISFSSATTTTQEEGTETGKTPPTASASTGAGVSSPGRPXXXXXXXXXNQEFAEAFERKYHIRTAAVRGMYVDLRVPFLPGALDAALEDLEQTIARDSAPPVEGGAKNRRRQVDTVSSGVRLASPLRG----SGGGTAGGKGRVGQNPHGGR--------LSFAKWYPWWIRHLPFDPASTGCLLKTVRCAKALHASEI 622
BLAST of mRNA_H-elongata_contig9017.16504.1 vs. uniprot
Match: A0A6H5L1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z0_9PHAE) HSP 1 Score: 223 bits (568), Expect = 5.610e-63 Identity = 177/481 (36.80%), Postives = 228/481 (47.40%), Query Frame = 1
Query: 304 ADKAAFREAVSRTKIVLKLLEVKI----LPPAS------CSSSPGTISTVPSKKWKEQDRINYASLDKRDPTRRRSVFLRANSRAVGLKTFIGRGAHENDKDEKRSVYKVLRKSTEAYSDRVETYGGGATR--CRRVVGGGNNLVPWDIVYKGVVSVEAARMNTAALAVQIAFRRRMFHRFVWAQGYLRRPMHAFAIFKRVSRPLLEGGNLDVTAVASGQRMDITPG------------DKGAADVGGGGEDWSKINSLDTWPEASGFCPSAPFHTHAVDVAFLEYRRWCHQASTVVPEARASTSAENEVTV-----VLDISSTLQVAPPPRP-------RGSP----LFERKYAIRTEAMRSTLLALHLPFMSGGIDAAIEDLSRTILTEA---LVGSGIKRVTSFNGVTCKSRTDTNSGVERAKIQSNRTRSIMQCRQG-ISFVKWYEWWVRHLPYDPCSATCLLKTIQCAKTLHAAEI 1614
++ AA EAV+RTK+VLKLLE K LP S + G + PS + S +RDP S N R K + +DK E + KVLR +TEAYSDRV GGGATR R G G V G E ARM+ AA VQ+AFR+RMFHRFVWAQ YLR P HA+ +FKR P+ G ADV + +N +D WPE GFCPS P H H+ D FL Y R C + S+ + + A+T+AE S+ V+ P RP + +P FERKY IRT A+ + L +PF+ G +DAA+EDL + I + L G G R + + V+ R + G I + R G +SF KWY WW+RHLP+DP S CLLKT++CAK LHA+EI
Sbjct: 4 SEDAASLEAVNRTKVVLKLLEAKAASSNLPLPSGGNGDAAGGTAGAVGRNPS--GNSPGARGHRSRRRRDP--HHSPPEAINDRRTKNKASVS-----DDKRETWDMKKVLRTATEAYSDRVGQQGGGATRINANRKPGAGCGATA---VGTGG---ERARMSAAAQTVQVAFRQRMFHRFVWAQAYLRGPTHAYEVFKRCL-PMPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQSTALADVAS-----AAVNLVDAWPELPGFCPSFPHHVHSADPIFLRYLRSCTRESSGISFSSATTTAEEGAATGRAPPTASASTGAGVSSPGRPPQQTQQQQHNPEFGEAFERKYNIRTAAVHGMYVDLRVPFLPGALDAALEDLEQIIARDGAPPLEGGGKNRRCNVDTVSNGVRLASPLGGSGGGIAVGKGRVTQNPHGGRLSFAKWYPWWIRHLPFDPASTGCLLKTVRCAKALHASEI 463
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1632 |
| Cds size | 1632 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931301.9222858-CDS-H-elongata_contig9017:3737..4442 | 1622931301.9222858-CDS-H-elongata_contig9017:3737..4442 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 3738..4442 - |
| 1691679780.3406432-CDS-H-elongata_contig9017:3737..4442 | 1691679780.3406432-CDS-H-elongata_contig9017:3737..4442 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 3738..4442 - |
| 1622931301.940122-CDS-H-elongata_contig9017:4487..5090 | 1622931301.940122-CDS-H-elongata_contig9017:4487..5090 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 4488..5090 - |
| 1691679780.3518596-CDS-H-elongata_contig9017:4487..5090 | 1691679780.3518596-CDS-H-elongata_contig9017:4487..5090 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 4488..5090 - |
| 1622931301.9603353-CDS-H-elongata_contig9017:5358..5529 | 1622931301.9603353-CDS-H-elongata_contig9017:5358..5529 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 5359..5529 - |
| 1691679780.365281-CDS-H-elongata_contig9017:5358..5529 | 1691679780.365281-CDS-H-elongata_contig9017:5358..5529 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 5359..5529 - |
| 1622931301.9734597-CDS-H-elongata_contig9017:5795..5948 | 1622931301.9734597-CDS-H-elongata_contig9017:5795..5948 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 5796..5948 - |
| 1691679780.3750691-CDS-H-elongata_contig9017:5795..5948 | 1691679780.3750691-CDS-H-elongata_contig9017:5795..5948 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9017 5796..5948 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9017.16504.1 >prot_H-elongata_contig9017.16504.1 ID=prot_H-elongata_contig9017.16504.1|Name=mRNA_H-elongata_contig9017.16504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=544bp
SREASSSRANGEKAGPPYRAERVWMRTGKWSEDDRELAEREIAGAILERQ QTLVEGYVRERRRYLNRRVSAQREGYGTFQNSWIADESWGGGHIRRRNIT EADKAAFREAVSRTKIVLKLLEVKILPPASCSSSPGTISTVPSKKWKEQD RINYASLDKRDPTRRRSVFLRANSRAVGLKTFIGRGAHENDKDEKRSVYK VLRKSTEAYSDRVETYGGGATRCRRVVGGGNNLVPWDIVYKGVVSVEAAR MNTAALAVQIAFRRRMFHRFVWAQGYLRRPMHAFAIFKRVSRPLLEGGNL DVTAVASGQRMDITPGDKGAADVGGGGEDWSKINSLDTWPEASGFCPSAP FHTHAVDVAFLEYRRWCHQASTVVPEARASTSAENEVTVVLDISSTLQVA PPPRPRGSPLFERKYAIRTEAMRSTLLALHLPFMSGGIDAAIEDLSRTIL TEALVGSGIKRVTSFNGVTCKSRTDTNSGVERAKIQSNRTRSIMQCRQGI SFVKWYEWWVRHLPYDPCSATCLLKTIQCAKTLHAAEIEAVIG* back to topmRNA from alignment at H-elongata_contig9017:3738..5948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig9017.16504.1 ID=mRNA_H-elongata_contig9017.16504.1|Name=mRNA_H-elongata_contig9017.16504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2211bp|location=Sequence derived from alignment at H-elongata_contig9017:3738..5948- (Himanthalia elongata Himel1 dioecious) TCGCGGGAAGCGAGTTCCAGCAGAGCCAACGGTGAAAAAGCGGGTCCACC
TTACCGTGCGGAACGAGTTTGGATGCGCACAGGAAAGTGGAGTGAGGACG
ACCGCGAACTTGCGGAACGTGAGATAGCGGGTGCAATCCTCGAGAGGCAG
CAGGTGGGAATGTGAAGAAATTGTAGCGCCAGTGGTTCCAGAATCGATTC
CAAGTCACTGTAGCGAAGGTGATTCCCGGGCTTGCCATCGCGTCGTTTCT
GTATATGAGGATAGAGTTCTTGTGGACGGAAAAAGAAGACTGATCGAATG
ACTTTGACAGTGACTTCAACATCTCACATGGAACTTGCGCCATCCTATAT
TTTGACATTCTCGCTTCGATCCACCTGTATCCTGATTACTTCATATCAGC
CTTTGACGTGTTTTCACAGACTCTTGTGGAAGGTTACGTACGGGAACGAC
GGCGTTACCTCAACCGAAGGGTGTCTGCACAACGTGAAGGGTATGGCACG
TTCCAAAACAGTTGGATTGCTGATGAAAGCTGGGGCGGGGGGCACATAAG
GAGACGAAATATAACGGAGGCGGACAAGGCAGCGTTTAGGGTGAGAATGT
CCCAACACTACGGTGCAGCGCAGGGTGCTTCATGCGCGTTCCTTCCCTCG
ATGTCGTCGATATTGCGCTCACTCCAACTTCCCTTCATTTTGAACTTTTC
TCAATTAAGGTATTGCTTTTGACGAAGGTGTTGATGTCGTATACTTCGTG
CGTTAGAACCCTGGCACCTATACTGACATCAATGGTGCTTTGAGAATGTA
CTCAACCTGTTTAATGAGGCTTTGCTGCCTAACAACTCGAGCGCTCGATT
ACCACCAGGAAGCCGTCAGTCGAACCAAAATCGTACTCAAGCTACTCGAG
GTCAAGATACTCCCCCCTGCATCATGTTCCTCATCACCGGGGACCATCTC
GACGGTTCCTTCAAAAAAATGGAAAGAGCAGGACCGAATCAACTACGCCA
GCTTGGACAAACGTGACCCCACACGGAGGAGATCGGTATTTCTTCGAGCA
AACTCCCGCGCGGTAGGCCTTAAAACTTTCATTGGCCGAGGAGCGCACGA
AAACGACAAAGATGAGAAGCGCAGCGTATACAAAGTTCTTCGCAAATCTA
CGGAGGCATACAGTGACAGAGTCGAAACGTATGGCGGTGGGGCAACACGA
TGCAGGAGGGTTGTAGGTGGCGGTAATAATTTGGTTCCATGGGATATTGT
TTATAAAGGCGTGGTATCAGTGGAGGCTGCTAGAATGAATACCGCTGCGC
TCGCGGTCCAGATAGCCTTTCGGCGACGGATGTTTCACCGCTTTGTGTGG
GCACAAGGCTACCTCCGCAGACCGATGCATGCGTTTGCTATCTTCAAGCG
CGTTTCCCGTCCCCTTTTGGAAGGCGGCAACCTAGATGTCACAGCTGTGG
CGAGCGGGCAGGTTGGTTTAGAGAGATCAACCGCTGCTAACACGGCAATA
CTTCAGCGAATGGATATTACGCCCGGAGATAAGGGTGCTGCCGATGTTGG
AGGTGGCGGGGAAGATTGGTCGAAGATCAATTCATTGGATACGTGGCCCG
AAGCGTCAGGATTCTGCCCTTCTGCTCCATTCCACACGCACGCAGTGGAT
GTCGCATTTTTGGAGTACCGGAGGTGGTGTCATCAAGCATCGACTGTTGT
TCCCGAAGCCAGAGCATCGACGTCAGCAGAGAACGAAGTGACGGTTGTAT
TAGATATATCTTCAACGCTTCAGGTGGCACCGCCTCCGCGTCCCCGAGGA
TCACCTCTCTTCGAGCGAAAATATGCGATTCGTACCGAAGCGATGCGATC
GACGCTCCTTGCCCTCCATTTACCATTCATGTCTGGTGGGATCGACGCCG
CGATCGAGGACTTGAGCAGGACCATACTCACAGAGGCTTTGGTTGGCAGC
GGTATCAAGAGAGTCACCTCTTTCAACGGGGTAACGTGCAAGTCGAGGAC
AGATACAAATAGTGGAGTCGAAAGGGCGAAAATCCAGAGCAACAGGACAC
GAAGCATCATGCAATGCAGACAGGGTATCAGCTTTGTGAAATGGTATGAA
TGGTGGGTGCGACATCTGCCATACGATCCTTGCTCAGCGACGTGCCTTTT
GAAGACAATTCAGTGCGCTAAAACTTTGCACGCTGCGGAAATCGAAGCTG
TCATTGGATAG back to topCoding sequence (CDS) from alignment at H-elongata_contig9017:3738..5948- >mRNA_H-elongata_contig9017.16504.1 ID=mRNA_H-elongata_contig9017.16504.1|Name=mRNA_H-elongata_contig9017.16504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3264bp|location=Sequence derived from alignment at H-elongata_contig9017:3738..5948- (Himanthalia elongata Himel1 dioecious) TCGCGGGAAGCGAGTTCCAGCAGAGCCAACGGTGAAAAAGCGGGTCCACC TTACCGTGCGGAACGAGTTTGGATGCGCACAGGAAAGTGGAGTGAGGACG ACCGCGAACTTGCGGAACGTGAGATAGCGGGTGCAATCCTCGAGAGGCAG CAGTCGCGGGAAGCGAGTTCCAGCAGAGCCAACGGTGAAAAAGCGGGTCC ACCTTACCGTGCGGAACGAGTTTGGATGCGCACAGGAAAGTGGAGTGAGG ACGACCGCGAACTTGCGGAACGTGAGATAGCGGGTGCAATCCTCGAGAGG CAGCAGACTCTTGTGGAAGGTTACGTACGGGAACGACGGCGTTACCTCAA CCGAAGGGTGTCTGCACAACGTGAAGGGTATGGCACGTTCCAAAACAGTT GGATTGCTGATGAAAGCTGGGGCGGGGGGCACATAAGGAGACGAAATATA ACGGAGGCGGACAAGGCAGCGTTTAGGACTCTTGTGGAAGGTTACGTACG GGAACGACGGCGTTACCTCAACCGAAGGGTGTCTGCACAACGTGAAGGGT ATGGCACGTTCCAAAACAGTTGGATTGCTGATGAAAGCTGGGGCGGGGGG CACATAAGGAGACGAAATATAACGGAGGCGGACAAGGCAGCGTTTAGGGA AGCCGTCAGTCGAACCAAAATCGTACTCAAGCTACTCGAGGTCAAGATAC TCCCCCCTGCATCATGTTCCTCATCACCGGGGACCATCTCGACGGTTCCT TCAAAAAAATGGAAAGAGCAGGACCGAATCAACTACGCCAGCTTGGACAA ACGTGACCCCACACGGAGGAGATCGGTATTTCTTCGAGCAAACTCCCGCG CGGTAGGCCTTAAAACTTTCATTGGCCGAGGAGCGCACGAAAACGACAAA GATGAGAAGCGCAGCGTATACAAAGTTCTTCGCAAATCTACGGAGGCATA CAGTGACAGAGTCGAAACGTATGGCGGTGGGGCAACACGATGCAGGAGGG TTGTAGGTGGCGGTAATAATTTGGTTCCATGGGATATTGTTTATAAAGGC GTGGTATCAGTGGAGGCTGCTAGAATGAATACCGCTGCGCTCGCGGTCCA GATAGCCTTTCGGCGACGGATGTTTCACCGCTTTGTGTGGGCACAAGGCT ACCTCCGCAGACCGATGCATGCGTTTGCTATCTTCAAGCGCGTTTCCCGT CCCCTTTTGGAAGGCGGCAACCTAGATGTCACAGCTGTGGCGAGCGGGCA GGAAGCCGTCAGTCGAACCAAAATCGTACTCAAGCTACTCGAGGTCAAGA TACTCCCCCCTGCATCATGTTCCTCATCACCGGGGACCATCTCGACGGTT CCTTCAAAAAAATGGAAAGAGCAGGACCGAATCAACTACGCCAGCTTGGA CAAACGTGACCCCACACGGAGGAGATCGGTATTTCTTCGAGCAAACTCCC GCGCGGTAGGCCTTAAAACTTTCATTGGCCGAGGAGCGCACGAAAACGAC AAAGATGAGAAGCGCAGCGTATACAAAGTTCTTCGCAAATCTACGGAGGC ATACAGTGACAGAGTCGAAACGTATGGCGGTGGGGCAACACGATGCAGGA GGGTTGTAGGTGGCGGTAATAATTTGGTTCCATGGGATATTGTTTATAAA GGCGTGGTATCAGTGGAGGCTGCTAGAATGAATACCGCTGCGCTCGCGGT CCAGATAGCCTTTCGGCGACGGATGTTTCACCGCTTTGTGTGGGCACAAG GCTACCTCCGCAGACCGATGCATGCGTTTGCTATCTTCAAGCGCGTTTCC CGTCCCCTTTTGGAAGGCGGCAACCTAGATGTCACAGCTGTGGCGAGCGG GCAGCGAATGGATATTACGCCCGGAGATAAGGGTGCTGCCGATGTTGGAG GTGGCGGGGAAGATTGGTCGAAGATCAATTCATTGGATACGTGGCCCGAA GCGTCAGGATTCTGCCCTTCTGCTCCATTCCACACGCACGCAGTGGATGT CGCATTTTTGGAGTACCGGAGGTGGTGTCATCAAGCATCGACTGTTGTTC CCGAAGCCAGAGCATCGACGTCAGCAGAGAACGAAGTGACGGTTGTATTA GATATATCTTCAACGCTTCAGGTGGCACCGCCTCCGCGTCCCCGAGGATC ACCTCTCTTCGAGCGAAAATATGCGATTCGTACCGAAGCGATGCGATCGA CGCTCCTTGCCCTCCATTTACCATTCATGTCTGGTGGGATCGACGCCGCG ATCGAGGACTTGAGCAGGACCATACTCACAGAGGCTTTGGTTGGCAGCGG TATCAAGAGAGTCACCTCTTTCAACGGGGTAACGTGCAAGTCGAGGACAG ATACAAATAGTGGAGTCGAAAGGGCGAAAATCCAGAGCAACAGGACACGA AGCATCATGCAATGCAGACAGGGTATCAGCTTTGTGAAATGGTATGAATG GTGGGTGCGACATCTGCCATACGATCCTTGCTCAGCGACGTGCCTTTTGA AGACAATTCAGTGCGCTAAAACTTTGCACGCTGCGGAAATCGAAGCTGTC ATTGGATAGCGAATGGATATTACGCCCGGAGATAAGGGTGCTGCCGATGT TGGAGGTGGCGGGGAAGATTGGTCGAAGATCAATTCATTGGATACGTGGC CCGAAGCGTCAGGATTCTGCCCTTCTGCTCCATTCCACACGCACGCAGTG GATGTCGCATTTTTGGAGTACCGGAGGTGGTGTCATCAAGCATCGACTGT TGTTCCCGAAGCCAGAGCATCGACGTCAGCAGAGAACGAAGTGACGGTTG TATTAGATATATCTTCAACGCTTCAGGTGGCACCGCCTCCGCGTCCCCGA GGATCACCTCTCTTCGAGCGAAAATATGCGATTCGTACCGAAGCGATGCG ATCGACGCTCCTTGCCCTCCATTTACCATTCATGTCTGGTGGGATCGACG CCGCGATCGAGGACTTGAGCAGGACCATACTCACAGAGGCTTTGGTTGGC AGCGGTATCAAGAGAGTCACCTCTTTCAACGGGGTAACGTGCAAGTCGAG GACAGATACAAATAGTGGAGTCGAAAGGGCGAAAATCCAGAGCAACAGGA CACGAAGCATCATGCAATGCAGACAGGGTATCAGCTTTGTGAAATGGTAT GAATGGTGGGTGCGACATCTGCCATACGATCCTTGCTCAGCGACGTGCCT TTTGAAGACAATTCAGTGCGCTAAAACTTTGCACGCTGCGGAAATCGAAG CTGTCATTGGATAG back to top
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