mRNA_H-elongata_contig89945.16483.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89945.16483.1
Unique NamemRNA_H-elongata_contig89945.16483.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89945.16483.1 vs. uniprot
Match: A0A7S0D7J9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D7J9_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 3.590e-6
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    7 SEYDFGNPGYSKTTAQFAAMVYKATTHVGLAIHRNVRGRYDVAAVFTPRGITHQEDFRSNVFPPLS 204
            S+YDF +P Y+  T  F  +V++ +THVG+A+ +   G Y + A ++P G  +   F SNV PP+S
Sbjct:  139 SKYDFEDPKYTSGTGHFTQVVWRGSTHVGMAVAKGRHGTY-IVANYSPPG-NYMGKFGSNVNPPVS 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89945.16483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0D7J9_9EUKA3.590e-639.39Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89945contigH-elongata_contig89945:203..421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931299.031211-CDS-H-elongata_contig89945:202..4211622931299.031211-CDS-H-elongata_contig89945:202..421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89945 203..421 -
1691679778.9866931-CDS-H-elongata_contig89945:202..4211691679778.9866931-CDS-H-elongata_contig89945:202..421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89945 203..421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89945.16483.1prot_H-elongata_contig89945.16483.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89945 203..421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89945.16483.1

>prot_H-elongata_contig89945.16483.1 ID=prot_H-elongata_contig89945.16483.1|Name=mRNA_H-elongata_contig89945.16483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
EGSEYDFGNPGYSKTTAQFAAMVYKATTHVGLAIHRNVRGRYDVAAVFTP
RGITHQEDFRSNVFPPLSVREK*
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mRNA from alignment at H-elongata_contig89945:203..421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89945.16483.1 ID=mRNA_H-elongata_contig89945.16483.1|Name=mRNA_H-elongata_contig89945.16483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig89945:203..421- (Himanthalia elongata Himel1 dioecious)
GAAGGTTCCGAATACGACTTTGGTAACCCTGGCTACAGCAAGACGACAGC
TCAATTCGCGGCGATGGTGTATAAGGCGACGACTCACGTCGGCTTGGCCA
TACACCGAAATGTACGCGGGAGATACGACGTTGCAGCCGTCTTTACTCCT
CGCGGCATAACTCACCAGGAAGACTTCAGAAGCAACGTTTTCCCTCCTTT
ATCGGTAAGAGAAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig89945:203..421-

>mRNA_H-elongata_contig89945.16483.1 ID=mRNA_H-elongata_contig89945.16483.1|Name=mRNA_H-elongata_contig89945.16483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig89945:203..421- (Himanthalia elongata Himel1 dioecious)
GAAGGTTCCGAATACGACTTTGGTAACCCTGGCTACAGCAAGACGACAGC
TCAATTCGCGGCGATGGTGTATAAGGCGACGACTCACGTCGGCTTGGCCA
TACACCGAAATGTACGCGGGAGATACGACGTTGCAGCCGTCTTTACTCCT
CGCGGCATAACTCACCAGGAAGACTTCAGAAGCAACGTTTTCCCTCCTTT
ATCGGTAAGAGAAAAATAAGAAGGTTCCGAATACGACTTTGGTAACCCTG
GCTACAGCAAGACGACAGCTCAATTCGCGGCGATGGTGTATAAGGCGACG
ACTCACGTCGGCTTGGCCATACACCGAAATGTACGCGGGAGATACGACGT
TGCAGCCGTCTTTACTCCTCGCGGCATAACTCACCAGGAAGACTTCAGAA
GCAACGTTTTCCCTCCTTTATCGGTAAGAGAAAAATAA
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