prot_H-elongata_contig89945.16483.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig89945.16483.1
Unique Nameprot_H-elongata_contig89945.16483.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
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BLAST of mRNA_H-elongata_contig89945.16483.1 vs. uniprot
Match: A0A7S0D7J9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D7J9_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 3.590e-6
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 0 
Query:    3 SEYDFGNPGYSKTTAQFAAMVYKATTHVGLAIHRNVRGRYDVAAVFTPRGITHQEDFRSNVFPPLS 68
            S+YDF +P Y+  T  F  +V++ +THVG+A+ +   G Y + A ++P G  +   F SNV PP+S
Sbjct:  139 SKYDFEDPKYTSGTGHFTQVVWRGSTHVGMAVAKGRHGTY-IVANYSPPG-NYMGKFGSNVNPPVS 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89945.16483.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0D7J9_9EUKA3.590e-639.39Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035940CAP superfamilyGENE3D3.40.33.10coord: 1..67
e-value: 3.6E-9
score: 38.9
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89945contigH-elongata_contig89945:203..421 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89945.16483.1mRNA_H-elongata_contig89945.16483.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig89945 203..421 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig89945.16483.1 ID=prot_H-elongata_contig89945.16483.1|Name=mRNA_H-elongata_contig89945.16483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
EGSEYDFGNPGYSKTTAQFAAMVYKATTHVGLAIHRNVRGRYDVAAVFTP
RGITHQEDFRSNVFPPLSVREK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035940CAP_sf