mRNA_H-elongata_contig8938.16440.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8938.16440.1
Unique NamemRNA_H-elongata_contig8938.16440.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.430e-33
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLLRHSWKIVE 210
            DPLDWWRV+ ADFP+LA LARRVLAIPATQAESERLFS  GNIVTK RN LAP+TVELLVLLRHSWKIVE
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 291          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.750e-25
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   28 SADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLLRHSWKIVE 210
            S DFP+LA LARRVLAIPATQA+SERLFS  GNIVTK RN LAP+TVELLVLLRHSWKIVE
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 211          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 PLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLLRHS 195
            PL+WWRVK+ ++P LA LARRVL IPA QA+SER+FS  G +VTKTR ++ P  V L+V LR++
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.310e-16
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLLRHSWKIVE 210
            +PLD WR K  ++P LA LARRVLAIP++QA+SER+FS  G  VT TR++L    VELLV LR+ W +V+
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVD 551          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: A0A420IYG9_9PEZI (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IYG9_9PEZI)

HSP 1 Score: 74.7 bits (182), Expect = 2.660e-15
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLLRHSWKI 204
            DPL +W+  S+  P LAILARRVLAIPAT A  ER FS + NI+T+ R +L P+TV+ L+LL+ SW +
Sbjct:   58 DPLLYWKNNSSRLPILAILARRVLAIPATSASIERAFSVSNNIITRNRTRLLPNTVKKLILLK-SWDL 124          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: R7TXD1_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=2 Tax=Capitella teleta TaxID=283909 RepID=R7TXD1_CAPTE)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-15
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLL 186
            DPL WW  K A +P++A++AR +LA+PA+   +ER+FS  GNIVT  R KL  S V+ L+ L
Sbjct:   26 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLAGNIVTNKRTKLTSSNVDSLIFL 87          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE)

HSP 1 Score: 71.6 bits (174), Expect = 4.890e-15
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLL 186
            DPL WW  K A +P++A++AR +LA+PA+   +ER+FS  GNIVT  R KL  S V+ L+ L
Sbjct:    3 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNIVTNKRTKLTSSNVDSLIFL 64          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: UPI002013FBC1 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013FBC1)

HSP 1 Score: 75.5 bits (184), Expect = 2.580e-14
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLL 186
            DPL WWRV    +P L I+AR+ L +PAT A SERLFS  GNIVT TR+ L P+ V +LV L
Sbjct:  440 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 501          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: A0A6P6NAP0_CARAU (zinc finger BED domain-containing protein 1-like n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A6P6NAP0_CARAU)

HSP 1 Score: 75.5 bits (184), Expect = 2.620e-14
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLL 186
            DPL WWRV    +P L I+AR+ L +PAT A SERLFS  GNIVT TR+ L P+ V +LV L
Sbjct:  599 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 660          
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Match: UPI001C5718BC (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C5718BC)

HSP 1 Score: 75.1 bits (183), Expect = 2.680e-14
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNKLAPSTVELLVLL 186
            DPL WWRV    +P L I+AR+ L +PAT A SERLFS  GNIVT TR+ L P  V +LV L
Sbjct:  295 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPEKVNILVFL 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8938.16440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE2.430e-3387.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.750e-2585.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.800e-1659.38Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI3.310e-1657.14Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A420IYG9_9PEZI2.660e-1555.88Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
R7TXD1_CAPTE4.400e-1550.00Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
R7UJ35_CAPTE4.890e-1550.00Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI002013FBC12.580e-1458.06E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobr... [more]
A0A6P6NAP0_CARAU2.620e-1458.06zinc finger BED domain-containing protein 1-like n... [more]
UPI001C5718BC2.680e-1458.06E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8938contigH-elongata_contig8938:6450..6659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.4224386-CDS-H-elongata_contig8938:6449..66591622931294.4224386-CDS-H-elongata_contig8938:6449..6659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8938 6450..6659 -
1691679777.2972841-CDS-H-elongata_contig8938:6449..66591691679777.2972841-CDS-H-elongata_contig8938:6449..6659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8938 6450..6659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8938.16440.1prot_H-elongata_contig8938.16440.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8938 6450..6659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8938.16440.1

>prot_H-elongata_contig8938.16440.1 ID=prot_H-elongata_contig8938.16440.1|Name=mRNA_H-elongata_contig8938.16440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
DPLDWWRVKSADFPNLAILARRVLAIPATQAESERLFSYTGNIVTKTRNK
LAPSTVELLVLLRHSWKIVE
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mRNA from alignment at H-elongata_contig8938:6450..6659-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8938.16440.1 ID=mRNA_H-elongata_contig8938.16440.1|Name=mRNA_H-elongata_contig8938.16440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig8938:6450..6659- (Himanthalia elongata Himel1 dioecious)
GACCCCTTGGACTGGTGGCGGGTGAAGAGCGCCGACTTCCCAAACTTGGC CATCCTCGCCCGGCGTGTGCTCGCCATCCCCGCCACACAGGCAGAGTCAG AGCGCCTGTTCTCCTACACAGGAAACATCGTGACCAAAACTCGCAACAAG TTGGCTCCCAGCACCGTCGAGTTGCTTGTTCTTCTGCGCCACTCGTGGAA GATAGTTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig8938:6450..6659-

>mRNA_H-elongata_contig8938.16440.1 ID=mRNA_H-elongata_contig8938.16440.1|Name=mRNA_H-elongata_contig8938.16440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig8938:6450..6659- (Himanthalia elongata Himel1 dioecious)
GACCCCTTGGACTGGTGGCGGGTGAAGAGCGCCGACTTCCCAAACTTGGC
CATCCTCGCCCGGCGTGTGCTCGCCATCCCCGCCACACAGGCAGAGTCAG
AGCGCCTGTTCTCCTACACAGGAAACATCGTGACCAAAACTCGCAACAAG
TTGGCTCCCAGCACCGTCGAGTTGCTTGTTCTTCTGCGCCACTCGTGGAA
GATAGTTGAAGACCCCTTGGACTGGTGGCGGGTGAAGAGCGCCGACTTCC
CAAACTTGGCCATCCTCGCCCGGCGTGTGCTCGCCATCCCCGCCACACAG
GCAGAGTCAGAGCGCCTGTTCTCCTACACAGGAAACATCGTGACCAAAAC
TCGCAACAAGTTGGCTCCCAGCACCGTCGAGTTGCTTGTTCTTCTGCGCC
ACTCGTGGAAGATAGTTGAA
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