mRNA_H-elongata_contig89136.16416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89136.16416.1
Unique NamemRNA_H-elongata_contig89136.16416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK)

HSP 1 Score: 139 bits (349), Expect = 7.380e-37
Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEE-DMELDKSIGDDSGWKQV 348
            FT+ FN  RI+ V L   +P+PI AGTTL+F+Y V W  TD  F  RF+ YL+ +FFEH+IHWFSI NSFMMVI L   V LIL+RTLKNDFAKY S + +ME   S+G+DSGWKQV
Sbjct:   10 FTVAFNGPRIVEVNLTSENPEPIKAGTTLDFSYSVHWSPTDQPFHSRFDRYLDNDFFEHQIHWFSIFNSFMMVIFLCGLVFLILMRTLKNDFAKYASMDGEMETGDSMGEDSGWKQV 126          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.910e-35
Identity = 71/118 (60.17%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYT-SEEDME-LDKSIGDDSGWKQV 348
            +TIL+N +RIIRV  E      I AGT L+FTY+V W  +D  FDKRF+SYL   FF+H+IHWFSI+NSFMMV+ L   VALIL++TLKNDFAKYT  ++D+E  D  +G+DSGWKQV
Sbjct:  170 YTILYNGNRIIRVLFEPDTAVAIAAGTALDFTYEVAWVESDVPFDKRFDSYLEPKFFKHRIHWFSIINSFMMVVFLCGLVALILVKTLKNDFAKYTPDDDDLEGPDAGVGEDSGWKQV 287          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A482RP88_9ARCH (Transmembrane 9 family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RP88_9ARCH)

HSP 1 Score: 129 bits (325), Expect = 3.960e-35
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    4 TILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEEDMELD--KSIGDDSGWKQV 348
            +I +N DRII V L   +P P+ AG  L+FTY V W  +  +F+ RF  YL  +FFEHKIHWFS+ NSFMMV+ L   VALIL+RTL+ND AKY  +ED++++  + IG+DSGWKQV
Sbjct:  123 SISYNQDRIIEVNLTSENPVPLEAGRQLQFTYSVRWHGSPKSFEDRFSRYLEYDFFEHKIHWFSVFNSFMMVLFLCGLVALILLRTLRNDLAKYARDEDLDVEGMQVIGEDSGWKQV 239          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A7S3M626_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M626_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.950e-34
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    4 TILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEEDMELD--KSIGDDSGWKQV 348
            +I ++ +RII V L   +P PI AG  L FTY V W+ T  +F+KRF  YL  +FFEHKIHWFSI NSFMMVI L   VA+I+ RTLKNDFA+Y  +ED++++  + IG+D+GWKQV
Sbjct:  116 SIAYSGNRIIEVNLTSENPVPIEAGQQLSFTYSVHWKETTKSFEKRFNRYLEYDFFEHKIHWFSIFNSFMMVIFLCGLVAIIMFRTLKNDFARYAKDEDLDVEGLQVIGEDTGWKQV 232          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A7S0SL78_9CHLO (Transmembrane 9 superfamily member n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SL78_9CHLO)

HSP 1 Score: 133 bits (334), Expect = 4.590e-34
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEEDM--ELDKSIGDDSGWKQV 348
            F I +N+++II V L   +P+P+T GT LEFTY ++WEAT   F KRFE YL+ NFFEH+IHWFSI NSFMMVI L   V++IL+RTL+ND+AKY  EED    L++ + ++SGWK V
Sbjct:  159 FEIGYNNEQIIMVNLTAENPRPLTPGTDLEFTYSIKWEATPIKFGKRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREEDDLDALERDVSEESGWKLV 276          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: M1AL77_SOLTU (Transmembrane 9 superfamily member n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1AL77_SOLTU)

HSP 1 Score: 124 bits (312), Expect = 1.480e-33
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    7 ILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
            I +N D+II V L Q  PKP+ AG TL+ TY V+WE T+ +F  RF+ YL+  FFEH+IHWFSI NSFMMVI L   V++IL+RTL+ND+AKY  E+D    L++ + ++SGWK V
Sbjct:   40 IKYNKDQIIHVNLSQESPKPLEAGRTLDMTYSVKWEPTNISFAHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLV 155          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A1Y1IFS9_KLENI (Transmembrane 9 superfamily member n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFS9_KLENI)

HSP 1 Score: 131 bits (329), Expect = 2.480e-33
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
            F I +N+++II+V L    PKP+  GT+LEFTY V+WEA+   F KRFE YL+ NFFEH+IHWFSI NSFMMVI L   V++IL+RTL+ND+AKY  EED    L++ + ++SGWK V
Sbjct:  171 FDINYNNEQIIQVNLTSDVPKPLVPGTSLEFTYSVKWEASTIPFAKRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREEDDLETLERDVSEESGWKLV 288          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A830HSI3_9CHLO (Transmembrane 9 superfamily member n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HSI3_9CHLO)

HSP 1 Score: 129 bits (325), Expect = 9.580e-33
Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
            F I ++  +II+V L   +P+P+T GTTLEFTY V WE+T   F +RFE YL+ NFFEH+IHWFSI NSFMMVI L   V++IL+RTL+ND+A+Y  EED    L++ + ++SGWK V
Sbjct:  184 FDIAYSGHQIIQVNLTSENPRPLTPGTTLEFTYSVRWESTAIPFRRRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYARYAREEDDLESLERDMSEESGWKLV 301          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A061RAB8_9CHLO (Transmembrane 9 superfamily member n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RAB8_9CHLO)

HSP 1 Score: 128 bits (322), Expect = 2.370e-32
Identity = 64/118 (54.24%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
            F I +N +RII+V L    P+P+  G+ LEFTY V+W+ T   F +RFE YL+ NFFEH+IHWFSI NSFMMVI L   V++IL+RTL+ND+AKY+ EED    L++ + ++SGWK V
Sbjct:  173 FDINYNGNRIIQVNLTSESPRPLVEGSNLEFTYSVKWQQTSIPFRRRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYSREEDDLETLERDVSEESGWKLV 290          
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: M1AL76_SOLTU (Transmembrane 9 superfamily member n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1AL76_SOLTU)

HSP 1 Score: 124 bits (312), Expect = 2.460e-32
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    7 ILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
            I +N D+II V L Q  PKP+ AG TL+ TY V+WE T+ +F  RF+ YL+  FFEH+IHWFSI NSFMMVI L   V++IL+RTL+ND+AKY  E+D    L++ + ++SGWK V
Sbjct:  161 IKYNKDQIIHVNLSQESPKPLEAGRTLDMTYSVKWEPTNISFAHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLV 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DBZ3_HETAK7.380e-3760.68Transmembrane 9 superfamily member n=1 Tax=Heteros... [more]
A0A6H5KXN7_9PHAE2.910e-3560.17Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A482RP88_9ARCH3.960e-3554.70Transmembrane 9 family protein (Fragment) n=1 Tax=... [more]
A0A7S3M626_9STRA1.950e-3455.56Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A7S0SL78_9CHLO4.590e-3456.78Transmembrane 9 superfamily member n=1 Tax=Mantoni... [more]
M1AL77_SOLTU1.480e-3354.31Transmembrane 9 superfamily member n=1 Tax=Solanum... [more]
A0A1Y1IFS9_KLENI2.480e-3356.78Transmembrane 9 superfamily member n=1 Tax=Klebsor... [more]
A0A830HSI3_9CHLO9.580e-3355.08Transmembrane 9 superfamily member n=2 Tax=Pycnoco... [more]
A0A061RAB8_9CHLO2.370e-3254.24Transmembrane 9 superfamily member n=2 Tax=Tetrase... [more]
M1AL76_SOLTU2.460e-3254.31Transmembrane 9 superfamily member n=1 Tax=Solanum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89136contigH-elongata_contig89136:741..2602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score128.6
Seed ortholog evalue1.8e-27
Seed eggNOG ortholog4096.XP_009776073.1
KEGG koko:K17087
GOsGO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425
EggNOG free text desc.Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family
EggNOG OGs37QY7@33090,3GBC8@35493,44NG6@71274,KOG1277@2759,KOG1278@1
Ec32 ortholog descriptionNonaspanin (TM9SF)
Ec32 orthologEc-21_005980.1
COG Functional cat.U
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89136.16416.1prot_H-elongata_contig89136.16416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89136 741..2602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.994613-CDS-H-elongata_contig89136:740..8061622931291.994613-CDS-H-elongata_contig89136:740..806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89136 741..806 -
1691679776.3541815-CDS-H-elongata_contig89136:740..8061691679776.3541815-CDS-H-elongata_contig89136:740..806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89136 741..806 -
1622931292.08922-CDS-H-elongata_contig89136:1708..18881622931292.08922-CDS-H-elongata_contig89136:1708..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89136 1709..1888 -
1691679776.3639843-CDS-H-elongata_contig89136:1708..18881691679776.3639843-CDS-H-elongata_contig89136:1708..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89136 1709..1888 -
1622931292.1071534-CDS-H-elongata_contig89136:2500..26021622931292.1071534-CDS-H-elongata_contig89136:2500..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89136 2501..2602 -
1691679776.3816242-CDS-H-elongata_contig89136:2500..26021691679776.3816242-CDS-H-elongata_contig89136:2500..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89136 2501..2602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89136.16416.1

>prot_H-elongata_contig89136.16416.1 ID=prot_H-elongata_contig89136.16416.1|Name=mRNA_H-elongata_contig89136.16416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFES
YLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED
MELDKSIGDDSGWKQV
back to top

mRNA from alignment at H-elongata_contig89136:741..2602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89136.16416.1 ID=mRNA_H-elongata_contig89136.16416.1|Name=mRNA_H-elongata_contig89136.16416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1862bp|location=Sequence derived from alignment at H-elongata_contig89136:741..2602- (Himanthalia elongata Himel1 dioecious)
TTTACCATTTTGTTCAACGATGACAGAATCATCCGAGTGACCTTGGAGCA GCGCGACCCGAAGCCTATCACGGCCGGGACCACGCTGGAGTTCACCTACA AGGTGAGTCCCTCGGTGAATCGATGGCGTCAGCAGCATCGGCGAATGGCG GGTGTCTAGCGAGGGGAAGAAAAAATAAATGAAAGAAAAACAGAACTCGA ATCCCTCCCTCTCACCTTACGTATCCCCGTAAAGTCACGTTTCCCGGCGA AGGATACGTGTCCCGCAACGTGAGGCTCTCGGTTTTGATAAAGTAGGACG TAGTATAGCGATCGATTTGTGCTATATAACAGGAGAGTCATTGCCTAGGC ATCAAAAATATTAGCCGGCCATACTATTATCTGTACTATTATTTATCCCT CCCCCTACCCCTCCCCAGATGGGAAATGAACGGCGAACCGGTCACACAAA GCGCAAGTATCGCGATCGTGCTGCTTCCTCATTATTTGTCTCTCTTTTTT TTGTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTCTTTTTTTTT TTTTTTTTTTTTTTTTTGTGATCGAGCGATTTGCGAAAAGTGTTAAGGGT AAAATGTAAATCATTATTTTTGCTCGTGTGTATTTAGCCGATTCTCTCTC TTCTCTCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCGATTTCTTT TTCGAACCTCGCAGGTGGAATGGGAGGCGACGGACAACGCGTTTGACAAG CGGTTCGAATCGTATCTGAACGCCAACTTCTTCGAGCACAAGATCCACTG GTTCTCCATCGTAAACTCGTTCATGATGGTCATTTTGCTCGTTTGCTTCG TGGCGCTGATTCTTATCCGCACGCTCAAGAACGACTTCGCGAAGGTCATA TATAGATATATTTACTATCTATATTACTTTTATTTTTATTTAAGACTTTA GGCTCATTCTCACTCTCCGAACATCCACACCTTCATGCACCATAGGACTA TCTATATTACATTGTACATAGTACATGGTATATAGTATATATTTACTGTT TTACTGTTTTTACTGCATTTATTAACTGAGTTATTCGTGTATTCATGTCG TTGTATTATCGCATCAAGACGCCGAAACGCTGATTGCTCCGCCCGCCCCA CCGCCTCACCGGCCCATCCCCCCCCCCATCCCCCTCCCCCTCAAGAAGGA GCCGCGGAGATTTTATTAGCTACATTAGGTGGCGGTTTTGTGGCGGGCTA CGTCTTAGGTTGATGGTGATAGTGGCGGACATGAAGAAGCCGCGTTTCGT TTCGCGGCAAATACAGGGATATATGAAGAGAAGGGTTGTCATCGTTACCA GTATCTCCTCACGGTAGACGCACCGCCTGTTTTCTTGTCGAAACCCTTTT CGAGGAACCTTTGCGTTGGCTTGTGGGGAGGGGGAGGGGAGGGGAGGGGG GAGACTTAAATGATTATCTACGCTAGCAATCGTCGGCGATCTCGGCTCTC GGAGAGGCACAAGAGAGCGCGCGTGTTTGTCTGTCTTTCTCTTTTTTCTC TCTCTCTCTCTCTCTCTCCTCACGCACACTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTTTTAATGTGT TTTACTCGTTTTTAATGTTTTTTACTCGGTTTTAATGTGTTTTACTCGGT TTTAATGTTTTTTACTCGGCTTTAATGTGTTTTACTCGGTTTTAATGTTT TTTACTCGGTTTTAATGTTTTTTACTCGGTTATAATGTGTTTTCAGTATA CATCAGAAGAGGACATGGAGCTGGATAAGAGTATCGGGGACGACAGCGGC TGGAAACAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig89136:741..2602-

>mRNA_H-elongata_contig89136.16416.1 ID=mRNA_H-elongata_contig89136.16416.1|Name=mRNA_H-elongata_contig89136.16416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig89136:741..2602- (Himanthalia elongata Himel1 dioecious)
TTTACCATTTTGTTCAACGATGACAGAATCATCCGAGTGACCTTGGAGCA
GCGCGACCCGAAGCCTATCACGGCCGGGACCACGCTGGAGTTCACCTACA
AGTTTACCATTTTGTTCAACGATGACAGAATCATCCGAGTGACCTTGGAG
CAGCGCGACCCGAAGCCTATCACGGCCGGGACCACGCTGGAGTTCACCTA
CAAGGTGGAATGGGAGGCGACGGACAACGCGTTTGACAAGCGGTTCGAAT
CGTATCTGAACGCCAACTTCTTCGAGCACAAGATCCACTGGTTCTCCATC
GTAAACTCGTTCATGATGGTCATTTTGCTCGTTTGCTTCGTGGCGCTGAT
TCTTATCCGCACGCTCAAGAACGACTTCGCGAAGGTGGAATGGGAGGCGA
CGGACAACGCGTTTGACAAGCGGTTCGAATCGTATCTGAACGCCAACTTC
TTCGAGCACAAGATCCACTGGTTCTCCATCGTAAACTCGTTCATGATGGT
CATTTTGCTCGTTTGCTTCGTGGCGCTGATTCTTATCCGCACGCTCAAGA
ACGACTTCGCGAAGTATACATCAGAAGAGGACATGGAGCTGGATAAGAGT
ATCGGGGACGACAGCGGCTGGAAACAGGTGTATACATCAGAAGAGGACAT
GGAGCTGGATAAGAGTATCGGGGACGACAGCGGCTGGAAACAGGTG
back to top