mRNA_H-elongata_contig89136.16416.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK) HSP 1 Score: 139 bits (349), Expect = 7.380e-37 Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 1
Query: 1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEE-DMELDKSIGDDSGWKQV 348
FT+ FN RI+ V L +P+PI AGTTL+F+Y V W TD F RF+ YL+ +FFEH+IHWFSI NSFMMVI L V LIL+RTLKNDFAKY S + +ME S+G+DSGWKQV
Sbjct: 10 FTVAFNGPRIVEVNLTSENPEPIKAGTTLDFSYSVHWSPTDQPFHSRFDRYLDNDFFEHQIHWFSIFNSFMMVIFLCGLVFLILMRTLKNDFAKYASMDGEMETGDSMGEDSGWKQV 126
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE) HSP 1 Score: 136 bits (343), Expect = 2.910e-35 Identity = 71/118 (60.17%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYT-SEEDME-LDKSIGDDSGWKQV 348
+TIL+N +RIIRV E I AGT L+FTY+V W +D FDKRF+SYL FF+H+IHWFSI+NSFMMV+ L VALIL++TLKNDFAKYT ++D+E D +G+DSGWKQV
Sbjct: 170 YTILYNGNRIIRVLFEPDTAVAIAAGTALDFTYEVAWVESDVPFDKRFDSYLEPKFFKHRIHWFSIINSFMMVVFLCGLVALILVKTLKNDFAKYTPDDDDLEGPDAGVGEDSGWKQV 287
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A482RP88_9ARCH (Transmembrane 9 family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RP88_9ARCH) HSP 1 Score: 129 bits (325), Expect = 3.960e-35 Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 1
Query: 4 TILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEEDMELD--KSIGDDSGWKQV 348
+I +N DRII V L +P P+ AG L+FTY V W + +F+ RF YL +FFEHKIHWFS+ NSFMMV+ L VALIL+RTL+ND AKY +ED++++ + IG+DSGWKQV
Sbjct: 123 SISYNQDRIIEVNLTSENPVPLEAGRQLQFTYSVRWHGSPKSFEDRFSRYLEYDFFEHKIHWFSVFNSFMMVLFLCGLVALILLRTLRNDLAKYARDEDLDVEGMQVIGEDSGWKQV 239
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A7S3M626_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M626_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.950e-34 Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query: 4 TILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEEDMELD--KSIGDDSGWKQV 348
+I ++ +RII V L +P PI AG L FTY V W+ T +F+KRF YL +FFEHKIHWFSI NSFMMVI L VA+I+ RTLKNDFA+Y +ED++++ + IG+D+GWKQV
Sbjct: 116 SIAYSGNRIIEVNLTSENPVPIEAGQQLSFTYSVHWKETTKSFEKRFNRYLEYDFFEHKIHWFSIFNSFMMVIFLCGLVAIIMFRTLKNDFARYAKDEDLDVEGLQVIGEDTGWKQV 232
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A7S0SL78_9CHLO (Transmembrane 9 superfamily member n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SL78_9CHLO) HSP 1 Score: 133 bits (334), Expect = 4.590e-34 Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query: 1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEEDM--ELDKSIGDDSGWKQV 348
F I +N+++II V L +P+P+T GT LEFTY ++WEAT F KRFE YL+ NFFEH+IHWFSI NSFMMVI L V++IL+RTL+ND+AKY EED L++ + ++SGWK V
Sbjct: 159 FEIGYNNEQIIMVNLTAENPRPLTPGTDLEFTYSIKWEATPIKFGKRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREEDDLDALERDVSEESGWKLV 276
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: M1AL77_SOLTU (Transmembrane 9 superfamily member n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1AL77_SOLTU) HSP 1 Score: 124 bits (312), Expect = 1.480e-33 Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 7 ILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
I +N D+II V L Q PKP+ AG TL+ TY V+WE T+ +F RF+ YL+ FFEH+IHWFSI NSFMMVI L V++IL+RTL+ND+AKY E+D L++ + ++SGWK V
Sbjct: 40 IKYNKDQIIHVNLSQESPKPLEAGRTLDMTYSVKWEPTNISFAHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLV 155
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A1Y1IFS9_KLENI (Transmembrane 9 superfamily member n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFS9_KLENI) HSP 1 Score: 131 bits (329), Expect = 2.480e-33 Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query: 1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
F I +N+++II+V L PKP+ GT+LEFTY V+WEA+ F KRFE YL+ NFFEH+IHWFSI NSFMMVI L V++IL+RTL+ND+AKY EED L++ + ++SGWK V
Sbjct: 171 FDINYNNEQIIQVNLTSDVPKPLVPGTSLEFTYSVKWEASTIPFAKRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREEDDLETLERDVSEESGWKLV 288
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A830HSI3_9CHLO (Transmembrane 9 superfamily member n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HSI3_9CHLO) HSP 1 Score: 129 bits (325), Expect = 9.580e-33 Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
F I ++ +II+V L +P+P+T GTTLEFTY V WE+T F +RFE YL+ NFFEH+IHWFSI NSFMMVI L V++IL+RTL+ND+A+Y EED L++ + ++SGWK V
Sbjct: 184 FDIAYSGHQIIQVNLTSENPRPLTPGTTLEFTYSVRWESTAIPFRRRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYARYAREEDDLESLERDMSEESGWKLV 301
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: A0A061RAB8_9CHLO (Transmembrane 9 superfamily member n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RAB8_9CHLO) HSP 1 Score: 128 bits (322), Expect = 2.370e-32 Identity = 64/118 (54.24%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 1 FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
F I +N +RII+V L P+P+ G+ LEFTY V+W+ T F +RFE YL+ NFFEH+IHWFSI NSFMMVI L V++IL+RTL+ND+AKY+ EED L++ + ++SGWK V
Sbjct: 173 FDINYNGNRIIQVNLTSESPRPLVEGSNLEFTYSVKWQQTSIPFRRRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYSREEDDLETLERDVSEESGWKLV 290
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Match: M1AL76_SOLTU (Transmembrane 9 superfamily member n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1AL76_SOLTU) HSP 1 Score: 124 bits (312), Expect = 2.460e-32 Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 7 ILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESYLNANFFEHKIHWFSIVNSFMMVILLVCFVALILIRTLKNDFAKYTSEED--MELDKSIGDDSGWKQV 348
I +N D+II V L Q PKP+ AG TL+ TY V+WE T+ +F RF+ YL+ FFEH+IHWFSI NSFMMVI L V++IL+RTL+ND+AKY E+D L++ + ++SGWK V
Sbjct: 161 IKYNKDQIIHVNLSQESPKPLEAGRTLDMTYSVKWEPTNISFAHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLV 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89136.16416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89136.16416.1 >prot_H-elongata_contig89136.16416.1 ID=prot_H-elongata_contig89136.16416.1|Name=mRNA_H-elongata_contig89136.16416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp FTILFNDDRIIRVTLEQRDPKPITAGTTLEFTYKVEWEATDNAFDKRFESback to top mRNA from alignment at H-elongata_contig89136:741..2602- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89136.16416.1 ID=mRNA_H-elongata_contig89136.16416.1|Name=mRNA_H-elongata_contig89136.16416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1862bp|location=Sequence derived from alignment at H-elongata_contig89136:741..2602- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89136:741..2602- >mRNA_H-elongata_contig89136.16416.1 ID=mRNA_H-elongata_contig89136.16416.1|Name=mRNA_H-elongata_contig89136.16416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig89136:741..2602- (Himanthalia elongata Himel1 dioecious)back to top |