mRNA_H-elongata_contig88971.16407.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88971.16407.1
Unique NamemRNA_H-elongata_contig88971.16407.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: D7FUB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUB7_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 5.530e-114
Identity = 178/226 (78.76%), Postives = 191/226 (84.51%), Query Frame = 1
Query:    1 VTGRRLSAHYPVLLLM-ASAPQEHLQGYKLPQVWTDLVRPEEVGDLMRTTCNRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSALSLEIMCNTLYSDVMQTTG-QDPTLPQQPITMQGGIAAVDFANTRVPLEGEVLPLSARCRHP 672
            V GRRL      LL   A   QEHLQGYKLP+VW DL+RPEEV DLM T CNRPLKVVNMI+ EIK+VPY  EDWSSRERLAILSMCNKL  TIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVV LATWALFGIQEIGLLIEDPFQSALSL+IMCN++Y+DVMQT G  DPTLPQQPI MQ GIA  D  +TRV  + +V+PLSARC+HP
Sbjct:  234 VFGRRLVQRIANLLACHAVILQEHLQGYKLPRVWEDLLRPEEVRDLMTTNCNRPLKVVNMISREIKSVPYRCEDWSSRERLAILSMCNKLGSTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVFLATWALFGIQEIGLLIEDPFQSALSLDIMCNSVYTDVMQTVGVADPTLPQQPIPMQVGIAVADLQDTRV--DQDVVPLSARCKHP 457          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A6V2T5N7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T5N7_HETAK)

HSP 1 Score: 184 bits (466), Expect = 1.660e-52
Identity = 96/179 (53.63%), Postives = 124/179 (69.27%), Query Frame = 1
Query:   28 YPVLLLMASAPQEHLQGYKLPQVWTDLVRPEEVGDLMRTTCNRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSALSLEIMCNTLYSDVMQTTGQDPTLP 564
            +P++L      QEHLQG + P      +  E+  +L R + NRPL +VN IA  +K V YS+  W+SRERLA+L++ N LSDTIG CERLVQTPVPL Y RHT+RFL++W   LPL + G+MG    P +GL  WALFGIQEIGL IEDPF+ AL LE++ +T+Y+DV+QT G    LP
Sbjct:  235 FPIVL------QEHLQGGEKPHRTEYFLEAEDYLELGRAS-NRPLCLVNKIAKVVKGVEYSAA-WTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMGSRDVLP 405          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S3ZCR8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCR8_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 1.240e-44
Identity = 73/150 (48.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  127 GDLMRTTCNRPLKVVNMIASEIKAVPYSSED------------WSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSALSLEIMCNTLYSDVMQT 540
             + ++   NRPL + N++A+E+  +P   E             +SSRERLA+L M + ++  IGGCER+VQTPVPL+Y RHTSRFLT WC  LP+ +V E+G A  PV  L  WA+FGIQEIGL+IE+PF+ AL+L + CNT++ D+ +T
Sbjct:    1 AESLKRVSNRPLYIANLLAAEVHGIPDQGETHARSSPGSGGVGFSSRERLAMLKMVDDMTGYIGGCERIVQTPVPLNYARHTSRFLTFWCLALPMALVSELGFAVVPVTALVVWAMFGIQEIGLMIEEPFRRALALHVFCNTIHHDIEET 150          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S4DXN2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXN2_9EUKA)

HSP 1 Score: 164 bits (415), Expect = 5.270e-44
Identity = 85/163 (52.15%), Postives = 118/163 (72.39%), Query Frame = 1
Query:   61 QEHLQGYKLPQ---VWTDLVRPEEVGDLMRTTCNRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSALSLEIMCNTLYSDVMQT 540
            ++HL  ++L +   V   L+ P++   L R T NRPL V+ M+   I  +P  S  ++SRERLA+L   +KL++ +G  ER+VQTPVPL+Y RHTSRFLT WC  LP+ IVGE+G A+ PV+ L TWAL+GIQEIGL+IE+PF+ +LSL + CNT+Y+DVM+T
Sbjct:  290 KQHLTEFRLNESRFVEQVLLSPQDRIALGRAT-NRPLAVLLMLGQAIHEIP-DSPTFASRERLAMLRTVDKLTECMGAAERIVQTPVPLNYARHTSRFLTFWCLTLPIAIVGELGFASIPVMALVTWALYGIQEIGLMIEEPFRRSLSLHVFCNTIYTDVMET 450          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S2V428_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V428_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.100e-40
Identity = 73/149 (48.99%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  106 LVRPEEVGDLMRTTCNRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQS--ALSLEIMCNTLYSDVMQTTG 546
            L+ P +V + M+   NRPL V+  +A E KA P ++  W+SRERL ++ M ++LS+ +G CERL+Q PVPL Y RHTSRFLTIW   LPL++  +MG+AT P +G+ +W L+GIQE+GL+IEDPF++   L LE   N ++ D++ T G
Sbjct:  132 LLPPGDVSE-MKHASNRPLWVLGKLAVECKATPLNALTWTSRERLTLVKMLDRLSEGLGACERLIQIPVPLAYARHTSRFLTIWVMSLPLMMAKDMGIATVPALGVISWGLYGIQELGLIIEDPFKNRQVLRLEHFSNRIFQDILDTLG 279          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S2G241_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G241_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.630e-40
Identity = 82/174 (47.13%), Postives = 114/174 (65.52%), Query Frame = 1
Query:   28 YPVLLLMASAPQEHLQGYKLPQVWTDLVRPEEVGDLMRTTCNRPLKVVNMIASEIKAVP--YSSED--WSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSALSLEIMCNTLYSDVMQ 537
            YP +L       EH+         T+L+  E+  +L R   N+PL ++ ++  EIKA+P  +S +   +SSRERL  L +  ++ ++I  CERLVQTPVPL+YVRHTSR LTIWC  LPL +  E+GM T PV+   +WALFGIQEIGL+IE+PF+ +L LE+M  T+  DVM+
Sbjct:   87 YPYILF------EHVTTKTCKNQVTNLLTREDKQELKRMG-NKPLFILFLLGREIKAIPDQHSGDQIMFSSRERLTFLKLVEQMGNSISQCERLVQTPVPLNYVRHTSRLLTIWCLTLPLALASELGMITVPVLFCISWALFGIQEIGLMIEEPFRRSLRLEVMTKTISDDVME 253          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S0W3I9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3I9_9CRYP)

HSP 1 Score: 148 bits (374), Expect = 6.670e-38
Identity = 83/189 (43.92%), Postives = 114/189 (60.32%), Query Frame = 1
Query:    4 TGRRLS---AHYPVLLLMASAPQEHLQGYKLPQVWTDLVRPEEVGDL--MRTTCNRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSA------LSLEIMCNTLYSDVMQ 537
            T RR++     +PV L      Q+H  G+  P+   DL+R     DL  +RT  NRP+ + N +A     +PYS E W+SRERLA++++ N++S  +G CERLVQTP+PLHY RHTSRFL ++   LPL +V E+G    P V    W LFG+QEIGL+IE+PF +       L L I C T+  DV +
Sbjct:  339 TSRRMADLICAFPVAL------QQHALGFLGPEQEDDLMRLVGEPDLEIIRTAANRPVCIANRMALVAHEIPYS-EQWTSRERLAMMALVNEISKCVGSCERLVQTPIPLHYARHTSRFLAVFTLTLPLFLVQEVGFMAVPAVACVVWCLFGVQEIGLMIENPFATTKEGNWGLPLNIFCKTVRHDVWE 520          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S0XTE6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XTE6_HEMAN)

HSP 1 Score: 146 bits (369), Expect = 2.530e-37
Identity = 82/189 (43.39%), Postives = 113/189 (59.79%), Query Frame = 1
Query:    4 TGRRLS---AHYPVLLLMASAPQEHLQGYKLPQVWTDLVRPEEVGDL--MRTTCNRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSA------LSLEIMCNTLYSDVMQ 537
            T RR++     +PV L      Q+H  G+  P+   DL+R     DL  +RT  NRP+ + N +A     +PYS + W+SRERLA++ + N++S  +G CERLVQTP+PLHY RHTSRFL ++   LPL +V E+G    P V    W LFG+QEIGL+IE+PF +       L L I C T+  DV +
Sbjct:  356 TSRRMADLICAFPVAL------QQHALGFLGPEQEHDLMRLVGEPDLEIIRTAANRPVCIANRMALVAHEIPYSDQ-WTSRERLAMMGLVNEISKCVGSCERLVQTPIPLHYARHTSRFLAVFTLTLPLFLVQEVGFMAVPAVACVVWCLFGVQEIGLMIENPFATTKEGNWGLPLNIFCKTVRHDVWE 537          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: L1IYQ9_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IYQ9_GUITC)

HSP 1 Score: 140 bits (353), Expect = 4.090e-37
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 1
Query:   55 APQEHLQGYKLPQVWTDLVR---PEEVGDLMRTTCNRPLKVVNMIASEI-KAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQ-EIGLLIEDPFQSALSLEIM 507
            A + HL+G+  P    +L R   P +   +++   NRPL +V  ++S I   VPY S+ W+SRERLA+L M N+L   +GGCER+VQTP+PLHY RHT RF+ ++C  LPLV +GEMG+   P V    W L+G+Q EIGLLIE+PF    S E+M
Sbjct:  132 ALKHHLEGFMGPDQEEELARLLNPLDRPGVLQAV-NRPLYIVQAMSSVITNDVPYQSDRWTSRERLAVLGMINELGKCVGGCERIVQTPIPLHYARHTGRFMGLFCLTLPLVFIGEMGLLAVPAVACVVWCLYGVQQEIGLLIENPFSR--STEVM 284          
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Match: A0A7S1UCQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCQ9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.960e-36
Identity = 81/184 (44.02%), Postives = 118/184 (64.13%), Query Frame = 1
Query:    7 GRRLSAHYPVLLLMASAPQEHLQGYKLPQVWTDLVRPEEVGDLMRTTCNRPLKVVNMIASEIKAVPY----SSED-----WSSRERLAILSMCNKLSDTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQEIGLLIEDPFQSALSLEIMCNTLYSDV 531
            GR L A +P +L      +EHL G    + +  L + E+    +    NRP+ ++N +++ +  VP     S+E+     +SSRERL++L+M   L   +G  ERLVQTPVPL Y RHTSRFL++WC  LP V+VGE+G+ T P++ L TWALFGIQEIGL+IE+PF  +L L ++C+++  DV
Sbjct:  105 GRMLCA-FPWVL------REHLTGLPASK-YLSLEKKEKRA--LAEARNRPMYIINKLSAALAMVPDQDVGSAEELPGHAFSSRERLSLLNMLKSLGQRVGAAERLVQTPVPLMYARHTSRFLSMWCLTLPFVLVGELGLWTVPLMTLVTWALFGIQEIGLMIENPFGVSLKLSVICDSISLDV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88971.16407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB7_ECTSI5.530e-11478.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V2T5N7_HETAK1.660e-5253.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3ZCR8_9EUKA1.240e-4448.67Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4DXN2_9EUKA5.270e-4452.15Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S2V428_9STRA1.100e-4048.99Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2G241_9STRA1.630e-4047.13Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0W3I9_9CRYP6.670e-3843.92Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XTE6_HEMAN2.530e-3743.39Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1IYQ9_GUITC4.090e-3748.08Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S1UCQ9_9STRA2.960e-3644.02Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88971contigH-elongata_contig88971:259..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score346.7
Seed ortholog evalue8.3e-93
Seed eggNOG ortholog2880.D7FUB7
KEGG koko:K08994
KEGG TC1.A.46.2
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006996,GO:0008150,GO:0008152,GO:0008308,GO:0008509,GO:0009507,GO:0009532,GO:0009533,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010109,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015698,GO:0015979,GO:0016020,GO:0016043,GO:0019222,GO:0019684,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0031323,GO:0031976,GO:0031984,GO:0034220,GO:0034357,GO:0042548,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0065007,GO:0071840,GO:0098656,GO:0098660,GO:0098661,GO:1902476
EggNOG free text desc.regulation of photosynthesis, light reaction
EggNOG OGs2QSQE@2759,COG3781@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size672
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88971.16407.1prot_H-elongata_contig88971.16407.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88971 259..2172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.106845-CDS-H-elongata_contig88971:258..4471622931291.106845-CDS-H-elongata_contig88971:258..447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 259..447 +
1691679775.9909887-CDS-H-elongata_contig88971:258..4471691679775.9909887-CDS-H-elongata_contig88971:258..447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 259..447 +
1622931291.2194648-CDS-H-elongata_contig88971:979..11721622931291.2194648-CDS-H-elongata_contig88971:979..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 980..1172 +
1691679776.0007942-CDS-H-elongata_contig88971:979..11721691679776.0007942-CDS-H-elongata_contig88971:979..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 980..1172 +
1622931291.236524-CDS-H-elongata_contig88971:1532..16331622931291.236524-CDS-H-elongata_contig88971:1532..1633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 1533..1633 +
1691679776.0087836-CDS-H-elongata_contig88971:1532..16331691679776.0087836-CDS-H-elongata_contig88971:1532..1633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 1533..1633 +
1622931291.2558033-CDS-H-elongata_contig88971:1983..21721622931291.2558033-CDS-H-elongata_contig88971:1983..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 1984..2172 +
1691679776.0170705-CDS-H-elongata_contig88971:1983..21721691679776.0170705-CDS-H-elongata_contig88971:1983..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88971 1984..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88971.16407.1

>prot_H-elongata_contig88971.16407.1 ID=prot_H-elongata_contig88971.16407.1|Name=mRNA_H-elongata_contig88971.16407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
VTGRRLSAHYPVLLLMASAPQEHLQGYKLPQVWTDLVRPEEVGDLMRTTC
NRPLKVVNMIASEIKAVPYSSEDWSSRERLAILSMCNKLSDTIGGCERLV
QTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVGLATWALFGIQ
EIGLLIEDPFQSALSLEIMCNTLYSDVMQTTGQDPTLPQQPITMQGGIAA
VDFANTRVPLEGEVLPLSARCRHP
back to top

mRNA from alignment at H-elongata_contig88971:259..2172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88971.16407.1 ID=mRNA_H-elongata_contig88971.16407.1|Name=mRNA_H-elongata_contig88971.16407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1914bp|location=Sequence derived from alignment at H-elongata_contig88971:259..2172+ (Himanthalia elongata Himel1 dioecious)
GTTACAGGCCGTAGGCTATCGGCCCACTACCCTGTCCTCTTACTTATGGC CTCGGCGCCTCAGGAGCACCTGCAGGGGTACAAGCTACCGCAGGTGTGGA CGGATCTGGTTCGCCCCGAGGAGGTCGGTGACCTTATGCGCACGACGTGC AACCGCCCGCTAAAGGTGGTGAACATGATCGCCAGCGAGGTGTGTGCGTG GGGTTCGGTCCGACGTACTTGGTATTATTAGTTGAGGTACACCACATTTA AGGTACATCGTATTTAAGGTACAATAAATTTAAGGTATAGTACATTTAAC GTATAGTGTATTTAATGTACAGTACATTTATTGTATAGTATATTTAAGGT ATAGTACCTTTTAAGATTTAGTGTATTTTTCTTGATCTCTTCCAAGCGGC GTAGTATATTTAAGGTACAGTACCTTTTAAGATTTAGTGTATTTTTCTTG ATCTCTTGCAAGCGGCGGTGCATGCCTTTTGCGCGTCGGGTGAAACAGGA ACGTTTCTAAGGTTGGAAGGTATCGTCGGGTTTGGTCAAGCCTCGATGGG AGAGTGACAAATTTCACGTAGGGCCACACATTCAGCCTGAAGAAAATCGA GATAGTTAAGTTATGAAATTAAGGCCTTTGGTGACGCCCGGTTGCCTGTA CTGCTGCTATACTCCGTGAGCATCGGCCCTCGCGCGCGCCGTCCCGACCC GCGACGACCCGGGCATAGCAGATCAAGGCAGTACCTTACAGCTCGGAGGA TTGGTCTTCGCGAGAGCGGCTGGCGATCCTCTCCATGTGCAACAAGCTGA GCGACACGATCGGCGGCTGCGAGAGGCTGGTCCAGACGCCCGTTCCACTC CACTACGTTCGGCACACGAGTCGGTTCCTGACCATCTGGTGCTTCCTGCT CCCCCTGGTGATCGGTGAGCGAATCTCCGGAGATTATTGCCTTTGAAGAG AAAAAGTCTCCGCTCTGCACCAGAACTGTTTCGTCATCCTACAGTACTAT CTACCATGTGTCTCTTTGCATCCTCCCGAAAAGAGTGCACGGAAGAAATA TGTTATCGAGCTGTAAATAGGTATGTATGTTCACTTTTTGTCTTAAAAAA ACAACTAAATCTTACCTCGCACTTTTTTTTTACTTTTTTACTTTTTTGAA GTACTTAAGAGCCAGAAAATAACAAATTATTATTATCTCATATACCCTTC ATCGCTCCTTATCCTGGCACCGGTCGCTGGTCGTTGGTATATCTGTCTTT TTTACGGTTGCTCCGGCGACGCAGTTGGAGAGATGGGCATGGCGACCGCC CCGGTGGTGGGCCTAGCCACGTGGGCGCTGTTCGGGATCCAGGAGATCGG CCTTCTCATCGAGGACCCCTTTCAGGTGACTTGGGGGTGATTCGACCCGA CTCGGTGGCTCGGTAGCTCAGCGACTCCTCCTGCACGTCGAGCGCTTCTG TCTTCTGCTTCTATTTTTTTTTGTCGTGCTTTTAGGTTATGTTAGGTTAG GTTAAATTAGGAAGCTTGGATCGCCAGCGTTGAGCCAGATTTTCTAACGT TTGGATCGCCAACAACGTAGCCGACACATCTAGCGGACTGCTTGGACGGA GGCAACTGCCCCCCCCCCCCTATCCCTCAACCTCTAATCCCCATCCCCAC TTTTTATTGTTATATTCTTCCCTCATTATACTCTAACCTCTATCTCATGG ATGTCGCTCTTTTTCCGTTGGTCAGTCCGCGCTGAGCTTGGAGATCATGT GCAACACCTTATACTCGGACGTGATGCAGACCACCGGGCAGGACCCGACG CTACCCCAGCAGCCCATCACCATGCAAGGCGGCATAGCCGCAGTGGACTT CGCGAACACCCGCGTGCCCCTGGAGGGAGAGGTGTTGCCCCTGTCCGCGC GGTGTAGGCATCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig88971:259..2172+

>mRNA_H-elongata_contig88971.16407.1 ID=mRNA_H-elongata_contig88971.16407.1|Name=mRNA_H-elongata_contig88971.16407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig88971:259..2172+ (Himanthalia elongata Himel1 dioecious)
GTTACAGGCCGTAGGCTATCGGCCCACTACCCTGTCCTCTTACTTATGGC
CTCGGCGCCTCAGGAGCACCTGCAGGGGTACAAGCTACCGCAGGTGTGGA
CGGATCTGGTTCGCCCCGAGGAGGTCGGTGACCTTATGCGCACGACGTGC
AACCGCCCGCTAAAGGTGGTGAACATGATCGCCAGCGAGGTTACAGGCCG
TAGGCTATCGGCCCACTACCCTGTCCTCTTACTTATGGCCTCGGCGCCTC
AGGAGCACCTGCAGGGGTACAAGCTACCGCAGGTGTGGACGGATCTGGTT
CGCCCCGAGGAGGTCGGTGACCTTATGCGCACGACGTGCAACCGCCCGCT
AAAGGTGGTGAACATGATCGCCAGCGAGATCAAGGCAGTACCTTACAGCT
CGGAGGATTGGTCTTCGCGAGAGCGGCTGGCGATCCTCTCCATGTGCAAC
AAGCTGAGCGACACGATCGGCGGCTGCGAGAGGCTGGTCCAGACGCCCGT
TCCACTCCACTACGTTCGGCACACGAGTCGGTTCCTGACCATCTGGTGCT
TCCTGCTCCCCCTGGTGATCGATCAAGGCAGTACCTTACAGCTCGGAGGA
TTGGTCTTCGCGAGAGCGGCTGGCGATCCTCTCCATGTGCAACAAGCTGA
GCGACACGATCGGCGGCTGCGAGAGGCTGGTCCAGACGCCCGTTCCACTC
CACTACGTTCGGCACACGAGTCGGTTCCTGACCATCTGGTGCTTCCTGCT
CCCCCTGGTGATCGTTGGAGAGATGGGCATGGCGACCGCCCCGGTGGTGG
GCCTAGCCACGTGGGCGCTGTTCGGGATCCAGGAGATCGGCCTTCTCATC
GAGGACCCCTTTCAGTTGGAGAGATGGGCATGGCGACCGCCCCGGTGGTG
GGCCTAGCCACGTGGGCGCTGTTCGGGATCCAGGAGATCGGCCTTCTCAT
CGAGGACCCCTTTCAGTCCGCGCTGAGCTTGGAGATCATGTGCAACACCT
TATACTCGGACGTGATGCAGACCACCGGGCAGGACCCGACGCTACCCCAG
CAGCCCATCACCATGCAAGGCGGCATAGCCGCAGTGGACTTCGCGAACAC
CCGCGTGCCCCTGGAGGGAGAGGTGTTGCCCCTGTCCGCGCGGTGTAGGC
ATCCCTCCGCGCTGAGCTTGGAGATCATGTGCAACACCTTATACTCGGAC
GTGATGCAGACCACCGGGCAGGACCCGACGCTACCCCAGCAGCCCATCAC
CATGCAAGGCGGCATAGCCGCAGTGGACTTCGCGAACACCCGCGTGCCCC
TGGAGGGAGAGGTGTTGCCCCTGTCCGCGCGGTGTAGGCATCCC
back to top