prot_H-elongata_contig88524.16376.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88524.16376.1
Unique Nameprot_H-elongata_contig88524.16376.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
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BLAST of mRNA_H-elongata_contig88524.16376.1 vs. uniprot
Match: D7FKI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0 
Query:   33 RYLATTGTAVDPSLYPEGGTYPHPIAVSLVSSDGSFVYYTTDGTSPDKTSTSVTSGDFIIVKDSTTLRAVAAHSDSTLFTASVSAEVEATYVIYSEGQ 130
            R LA T  A DP+ +P+GGTY  PIAVSLVS D + VYYTTDGT PD TST VTS + I++++S T+RA+AA      F A  SAEVEA++V+Y  G+
Sbjct:  144 RALAGTEQAEDPTFFPDGGTYHEPIAVSLVSDDSAVVYYTTDGTVPDGTSTFVTSSELIVLEESVTIRAIAAFQGED-FDARSSAEVEASFVVYVAGK 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88524.16376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI0_ECTSI1.950e-2056.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13290CHB_HEX_C_1coord: 48..107
e-value: 2.9E-10
score: 40.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88524contigH-elongata_contig88524:272..670 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88524.16376.1mRNA_H-elongata_contig88524.16376.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88524 272..670 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88524.16376.1 ID=prot_H-elongata_contig88524.16376.1|Name=mRNA_H-elongata_contig88524.16376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
TVDRSDFQLTHAKFKIRPQILFPQPNISQQVGRYLATTGTAVDPSLYPEG
GTYPHPIAVSLVSSDGSFVYYTTDGTSPDKTSTSVTSGDFIIVKDSTTLR
AVAAHSDSTLFTASVSAEVEATYVIYSEGQKL*
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