mRNA_H-elongata_contig88524.16376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88524.16376.1
Unique NamemRNA_H-elongata_contig88524.16376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig88524.16376.1 vs. uniprot
Match: D7FKI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:   97 RYLATTGTAVDPSLYPEGGTYPHPIAVSLVSSDGSFVYYTTDGTSPDKTSTSVTSGDFIIVKDSTTLRAVAAHSDSTLFTASVSAEVEATYVIYSEGQ 390
            R LA T  A DP+ +P+GGTY  PIAVSLVS D + VYYTTDGT PD TST VTS + I++++S T+RA+AA      F A  SAEVEA++V+Y  G+
Sbjct:  144 RALAGTEQAEDPTFFPDGGTYHEPIAVSLVSDDSAVVYYTTDGTVPDGTSTFVTSSELIVLEESVTIRAIAAFQGED-FDARSSAEVEASFVVYVAGK 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88524.16376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI0_ECTSI1.950e-2056.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88524contigH-elongata_contig88524:272..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog2880.D7FKI0
EggNOG OGs28HYU@1,2QQ9N@2759
Ec32 ortholog descriptionChitobiase/beta-hexosaminidase C-terminal domain
Ec32 orthologEc-12_001990.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.2368057-CDS-H-elongata_contig88524:271..6701622931287.2368057-CDS-H-elongata_contig88524:271..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88524 272..670 +
1691679774.419178-CDS-H-elongata_contig88524:271..6701691679774.419178-CDS-H-elongata_contig88524:271..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88524 272..670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88524.16376.1prot_H-elongata_contig88524.16376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88524 272..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88524.16376.1

>prot_H-elongata_contig88524.16376.1 ID=prot_H-elongata_contig88524.16376.1|Name=mRNA_H-elongata_contig88524.16376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
TVDRSDFQLTHAKFKIRPQILFPQPNISQQVGRYLATTGTAVDPSLYPEG
GTYPHPIAVSLVSSDGSFVYYTTDGTSPDKTSTSVTSGDFIIVKDSTTLR
AVAAHSDSTLFTASVSAEVEATYVIYSEGQKL*
back to top

mRNA from alignment at H-elongata_contig88524:272..670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88524.16376.1 ID=mRNA_H-elongata_contig88524.16376.1|Name=mRNA_H-elongata_contig88524.16376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig88524:272..670+ (Himanthalia elongata Himel1 dioecious)
ACGGTCGACAGATCGGACTTTCAGCTTACACATGCCAAGTTCAAAATCCG
ACCGCAAATCCTCTTTCCCCAGCCTAATATCAGTCAACAAGTGGGGCGAT
ACCTTGCTACCACGGGTACGGCGGTGGATCCTTCCCTATACCCTGAAGGT
GGCACATATCCCCATCCTATAGCCGTATCTTTGGTGTCCAGCGACGGATC
ATTCGTATACTACACGACTGATGGTACTTCACCCGATAAGACATCGACCT
CCGTGACCTCCGGTGATTTTATCATCGTTAAAGATTCCACCACCCTCCGA
GCTGTGGCGGCTCACAGCGATTCGACATTATTTACTGCCTCAGTGTCAGC
TGAGGTCGAGGCAACATATGTTATCTATTCAGAAGGTCAGAAACTATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig88524:272..670+

>mRNA_H-elongata_contig88524.16376.1 ID=mRNA_H-elongata_contig88524.16376.1|Name=mRNA_H-elongata_contig88524.16376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig88524:272..670+ (Himanthalia elongata Himel1 dioecious)
ACGGTCGACAGATCGGACTTTCAGCTTACACATGCCAAGTTCAAAATCCG
ACCGCAAATCCTCTTTCCCCAGCCTAATATCAGTCAACAAGTGGGGCGAT
ACCTTGCTACCACGGGTACGGCGGTGGATCCTTCCCTATACCCTGAAGGT
GGCACATATCCCCATCCTATAGCCGTATCTTTGGTGTCCAGCGACGGATC
ATTCGTATACTACACGACTGATGGTACTTCACCCGATAAGACATCGACCT
CCGTGACCTCCGGTGATTTTATCATCGTTAAAGATTCCACCACCCTCCGA
GCTGTGGCGGCTCACAGCGATTCGACATTATTTACTGCCTCAGTGTCAGC
TGAGGTCGAGGCAACATATGTTATCTATTCAGAAGGTCAGAAACTATAAA
CGGTCGACAGATCGGACTTTCAGCTTACACATGCCAAGTTCAAAATCCGA
CCGCAAATCCTCTTTCCCCAGCCTAATATCAGTCAACAAGTGGGGCGATA
CCTTGCTACCACGGGTACGGCGGTGGATCCTTCCCTATACCCTGAAGGTG
GCACATATCCCCATCCTATAGCCGTATCTTTGGTGTCCAGCGACGGATCA
TTCGTATACTACACGACTGATGGTACTTCACCCGATAAGACATCGACCTC
CGTGACCTCCGGTGATTTTATCATCGTTAAAGATTCCACCACCCTCCGAG
CTGTGGCGGCTCACAGCGATTCGACATTATTTACTGCCTCAGTGTCAGCT
GAGGTCGAGGCAACATATGTTATCTATTCAGAAGGTCAGAAACTATAA
back to top