mRNA_H-elongata_contig884.16366.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.050e-43 Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 2
Query: 5 LSPEQFSRRMTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESFARCTVTDLGLPQEMEAPIAFSVHQQLCKHRMAGSRSPTEEDDLIDKSRLGPHIS 427
LSP +FSRR ELG+ SF+ P+A+SI +QL+++ P W EGT+A A EN+Q + IDVRFRS+I+RDRLQWDVNC NSPE FAR TV DL LPQEME IA + HQQ+ + RMA S T +D K GP +S
Sbjct: 39 LSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQFKDVEGPCVS 179
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: A0A507CBB2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CBB2_9FUNG) HSP 1 Score: 63.9 bits (154), Expect = 1.880e-7 Identity = 56/238 (23.53%), Postives = 105/238 (44.12%), Query Frame = 2
Query: 8 SPEQFSRRMTEELGLS--RSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESFARCTVTDLGLPQEMEAPIAFSVHQQLCKHRMAGSRSPTEEDD-----LIDKSRLGPHISFVHPVDQYEFNSRDWSNHRPTSKSTN*L*RCEQPTEEGRHELRSARPGRL*QWLNLDSQQSPHALLGVSPGSESALVLQHGW*FHNICGIS 700
+P +F+ + E+L + + L +A+ I QL ++ A+ S+ + E+ I +D+ + +D+ +WD+N + PE FAR V DLGL E + IA+S+ +QL +HR+ + + L D+ G VH ++ + R T+K R ++ + L +AR R+ +D + V+ G++ L+ N CG++
Sbjct: 526 TPYKFAEMLCEDLDIKPVSQYALQMAQMIQNQLSEYA----AFYSDVDLPPGEDVRVKIQLDLNCGKLHLQDQFEWDLNS-DYLPEDFARNLVADLGLGGEFVSMIAYSIREQLHRHRVTQLLEDADGGEPLVTILRDEREAGEWEPVVHVLNDEDMEKLTAERERVTAK------RLKKEAKFPPRSLINARSRRIAAGAGIDIRHMDQEQEAVTKGTDDTSALKC-----NHCGLT 747
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: A0A388K753_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K753_CHABU) HSP 1 Score: 60.8 bits (146), Expect = 4.620e-7 Identity = 39/115 (33.91%), Postives = 56/115 (48.70%), Query Frame = 2
Query: 11 PEQFSRRMTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESFARCTVTDLGLPQEMEAPIAFSVHQQLCKHR 355
P SR++ E+GL S+ + I L F G E L +D+ V F + IY+D++QWD+N NSPE FA DL L + PIA +V +Q+ +HR
Sbjct: 78 PPLISRQLCREMGLPVSYERLIEAQIRAGLKKFA---------GKEDFGGEALVTLDLSVEFGNEIYKDKVQWDLNESQNSPEMFAWQVCEDLRLKVDFMEPIAVTVREQIEQHR 183
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: A5DTK9_LODEL (Uncharacterized protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DTK9_LODEL) HSP 1 Score: 60.8 bits (146), Expect = 1.100e-6 Identity = 32/111 (28.83%), Postives = 60/111 (54.05%), Query Frame = 2
Query: 5 LSPEQFSRRMTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESFARCTVTDLGLPQEMEAPIAFSVHQ 337
++P F+ + +L L S + SI++QL ++ ++ S T+ + + +ID+ V +Y+DR++WD+N +PE FA V DLGL E + I+ ++H+
Sbjct: 155 ITPSDFAEILCNDLELPNSMGQQITDSITQQLEEY-----SYASNLTIQSKDPCNVIIDLSVNLNKQLYQDRIEWDLNQNQVTPEQFAEIVVADLGLSLEFKLAISHALHE 260
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: A0A0V0R3Q0_PSEPJ (Lambda repressor-like, DNA-binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R3Q0_PSEPJ) HSP 1 Score: 59.7 bits (143), Expect = 2.300e-6 Identity = 30/88 (34.09%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 2 QLSPEQFSRRMTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESF 265
QL+PEQF++ + EE + ++ SI R + +F+ +T+ ++EENL++I+I +R I Y+D+ +WD++ NN+PE+F
Sbjct: 123 QLTPEQFAKIICEENNFPQQIESEISSSIKRAITNFKPYQ--YTN-----SSEENLRIIEIQIRINKIQYKDQFEWDISDQNNNPEAF 203
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: A0A0U9HLK8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HLK8_KLENI) HSP 1 Score: 56.2 bits (134), Expect = 1.170e-5 Identity = 34/111 (30.63%), Postives = 54/111 (48.65%), Query Frame = 2
Query: 11 PEQFSRRMTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESFARCTVTDLGLPQEMEAPIAFSVHQQL 343
P + +R+M EELG+ + +A ++ L + +E+L ++++V Y+DR+ WD+N NSP+ FA TDLGLP PI V +QL
Sbjct: 42 PIKVARKMWEELGVPAALERVIATQLNVGLKKYHKK----------DLCKEHLVEVNLNVELEGRTYKDRVLWDLNEPQNSPDEFAFSVCTDLGLPMSFVDPIRTDVLKQL 142
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Match: H8WWU6_CANO9 (Uncharacterized protein n=3 Tax=Candida TaxID=1535326 RepID=H8WWU6_CANO9) HSP 1 Score: 57.4 bits (137), Expect = 1.440e-5 Identity = 31/111 (27.93%), Postives = 58/111 (52.25%), Query Frame = 2
Query: 5 LSPEQFSRRMTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDIDVRFRSIIYRDRLQWDVNCLNNSPESFARCTVTDLGLPQEMEAPIAFSVHQ 337
++P F+ + +L L I +A SI++Q+ ++ ++ S ++ +ID+ V +Y+DR++WD+N +PE FA V DLGL E I+ ++H+
Sbjct: 146 ITPTDFAAILCNDLELPNPMIGQIADSITQQIEEY-----SYASNLSIPNRNPCNVIIDLSVNLNKQLYQDRIEWDLNQNEITPEKFAEIVVADLGLSLEFNLAISHALHE 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig884.16366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig884.16366.1 >prot_H-elongata_contig884.16366.1 ID=prot_H-elongata_contig884.16366.1|Name=mRNA_H-elongata_contig884.16366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp MTEELGLSRSFILPVARSISRQLLDFRSSMPAWTSEGTVAAAEENLQMIDback to top mRNA from alignment at H-elongata_contig884:15707..18229+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig884.16366.1 ID=mRNA_H-elongata_contig884.16366.1|Name=mRNA_H-elongata_contig884.16366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2523bp|location=Sequence derived from alignment at H-elongata_contig884:15707..18229+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig884:15707..18229+ >mRNA_H-elongata_contig884.16366.1 ID=mRNA_H-elongata_contig884.16366.1|Name=mRNA_H-elongata_contig884.16366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig884:15707..18229+ (Himanthalia elongata Himel1 dioecious)back to top |