prot_H-elongata_contig88035.16331.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88035.16331.1
Unique Nameprot_H-elongata_contig88035.16331.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
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BLAST of mRNA_H-elongata_contig88035.16331.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:   27 GGILMAMAMTTECRPRKMPSYEYKRLWLDVIEGFVGGMSLAATSLLPLFHLLRALFGLSML 87
            GGIL++MA   E   R++     KRLWLDV+E F   +SLA +SL PL+H LR +FGLS+L
Sbjct:   62 GGILVSMAKPAEP-VRQVALLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLL 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88035.16331.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ41_ECTSI1.180e-752.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..78
NoneNo IPR availableTMHMMTMhelixcoord: 52..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88035contigH-elongata_contig88035:666..1498 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88035.16331.1mRNA_H-elongata_contig88035.16331.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88035 666..1498 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88035.16331.1 ID=prot_H-elongata_contig88035.16331.1|Name=mRNA_H-elongata_contig88035.16331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
REVAECRAGRVGGGRGGGENEDGPEGGGILMAMAMTTECRPRKMPSYEYK
RLWLDVIEGFVGGMSLAATSLLPLFHLLRALFGLSML
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