mRNA_H-elongata_contig88035.16331.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88035.16331.1
Unique NamemRNA_H-elongata_contig88035.16331.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88035.16331.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   79 GGILMAMAMTTECRPRKMPSYEYKRLWLDVIEGFVGGMSLAATSLLPLFHLLRALFGLSML 261
            GGIL++MA   E   R++     KRLWLDV+E F   +SLA +SL PL+H LR +FGLS+L
Sbjct:   62 GGILVSMAKPAEP-VRQVALLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLL 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88035.16331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ41_ECTSI1.180e-752.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88035contigH-elongata_contig88035:666..1498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931281.4814398-CDS-H-elongata_contig88035:665..8141622931281.4814398-CDS-H-elongata_contig88035:665..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88035 666..814 -
1691679771.8339727-CDS-H-elongata_contig88035:665..8141691679771.8339727-CDS-H-elongata_contig88035:665..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88035 666..814 -
1622931281.5009582-CDS-H-elongata_contig88035:1386..14981622931281.5009582-CDS-H-elongata_contig88035:1386..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88035 1387..1498 -
1691679771.8448966-CDS-H-elongata_contig88035:1386..14981691679771.8448966-CDS-H-elongata_contig88035:1386..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88035 1387..1498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88035.16331.1prot_H-elongata_contig88035.16331.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88035 666..1498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88035.16331.1

>prot_H-elongata_contig88035.16331.1 ID=prot_H-elongata_contig88035.16331.1|Name=mRNA_H-elongata_contig88035.16331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
REVAECRAGRVGGGRGGGENEDGPEGGGILMAMAMTTECRPRKMPSYEYK
RLWLDVIEGFVGGMSLAATSLLPLFHLLRALFGLSML
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mRNA from alignment at H-elongata_contig88035:666..1498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88035.16331.1 ID=mRNA_H-elongata_contig88035.16331.1|Name=mRNA_H-elongata_contig88035.16331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=833bp|location=Sequence derived from alignment at H-elongata_contig88035:666..1498- (Himanthalia elongata Himel1 dioecious)
CGGGAAGTAGCAGAGTGTCGCGCCGGCAGAGTTGGGGGAGGAAGAGGAGG
AGGAGAGAATGAGGACGGGCCTGAGGGTGGCGGTATTCTGATGGCCATGG
CCATGACCACGGGTGCGTTGTTTTTTTTTTGTGTGTCTTTACTTTTGTTG
TTGTTTTGTTGGGGGGGGGGGTGTGCGGGTGTCTTTGTGCTTGTTTCATC
CATGTGCGGCCTGATCGGTGTGTGCGGTCGGATGCCGTTGTGAAAGCGGG
CTAGTGCGAGTCGTGATGGTCGGTTGTGTTGGTCGGTTGGTTTCGATGTT
CTGGAGGCATTCTTCGGGTAGGGTTAGGGATAAGGGTTCAAGCACAGTCA
TATCCCGGACACATTATATTTTCGATTGCTGTTCACGGAGGGGATAGGGG
ACAGGAGTAAAGCTGTAGGGAATAGAGGATATAGAATGAGAGCGCCCATC
CTTTTTGCTTTTTGTGGACTTCAATTGACGTAAGGGTTAGATTGAGGGTC
AGGCGAGGGCACCACAGGGACAAGACCAGACCCAGCCGGATCTGGTTCCC
TATCTTGGCTCCTAAATCTAACCCGTAAGCGACGCACTAGCGCCCCCTTC
AGTCCTTCAGTCCGACCGCTGCTAACCTTCACGTGCAACCAACCATGCCT
TCGCGCTGTCCACCCATCCCCCCCCAACGGGCAGAATGTCGGCCTCGGAA
AATGCCATCGTACGAGTATAAGCGACTGTGGCTCGACGTCATCGAGGGCT
TTGTTGGGGGCATGTCGCTCGCCGCGACTTCCTTGCTCCCGCTGTTCCAT
TTGCTAAGAGCTTTGTTCGGGCTGTCTATGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig88035:666..1498-

>mRNA_H-elongata_contig88035.16331.1 ID=mRNA_H-elongata_contig88035.16331.1|Name=mRNA_H-elongata_contig88035.16331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig88035:666..1498- (Himanthalia elongata Himel1 dioecious)
CGGGAAGTAGCAGAGTGTCGCGCCGGCAGAGTTGGGGGAGGAAGAGGAGG
AGGAGAGAATGAGGACGGGCCTGAGGGTGGCGGTATTCTGATGGCCATGG
CCATGACCACGGCGGGAAGTAGCAGAGTGTCGCGCCGGCAGAGTTGGGGG
AGGAAGAGGAGGAGGAGAGAATGAGGACGGGCCTGAGGGTGGCGGTATTC
TGATGGCCATGGCCATGACCACGGAATGTCGGCCTCGGAAAATGCCATCG
TACGAGTATAAGCGACTGTGGCTCGACGTCATCGAGGGCTTTGTTGGGGG
CATGTCGCTCGCCGCGACTTCCTTGCTCCCGCTGTTCCATTTGCTAAGAG
CTTTGTTCGGGCTGTCTATGTTGAATGTCGGCCTCGGAAAATGCCATCGT
ACGAGTATAAGCGACTGTGGCTCGACGTCATCGAGGGCTTTGTTGGGGGC
ATGTCGCTCGCCGCGACTTCCTTGCTCCCGCTGTTCCATTTGCTAAGAGC
TTTGTTCGGGCTGTCTATGTTG
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