mRNA_H-elongata_contig87712.16302.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: D8LSC2_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC2_ECTSI) HSP 1 Score: 327 bits (838), Expect = 1.350e-109 Identity = 169/198 (85.35%), Postives = 182/198 (91.92%), Query Frame = 1
Query: 22 KVHTTSLVPAGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQVR 615
+VH+TSLVPAG+PESDVQPVL+GI+EPLLKACRLS DGLDPSDGAVFMLNNID +REAL+A+ HTEAWT LT +MD+WLGVLVRHQADKVLERCG+AQAVRAA AAE Q G +E PGLQE SLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTA+LVAEAHE VHRLVSREDSGYADRSFLLHTPEQVR
Sbjct: 165 QVHSTSLVPAGEPESDVQPVLSGIVEPLLKACRLSADGLDPSDGAVFMLNNIDAIREALVAHAHTEAWTLELTTEMDKWLGVLVRHQADKVLERCGVAQAVRAAAAAEG--QTGPMNEVPGLQERSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYADRSFLLHTPEQVR 360
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.340e-34 Identity = 80/194 (41.24%), Postives = 113/194 (58.25%), Query Frame = 1
Query: 43 VPAGDPESDVQPVLNGIIEPLLKACRLSCDG-LDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQK--GVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQVR 615
VP + E ++ +L I+EPLL CR S +G LD D A M+N + A+ ++ W+R+LTA+M WLGVLV H+A+++L CGL ++ E+ K G ASE+PGL +S+ + FYS++F L +P FERL R AR+ A +A AH+ V+ LV + Y D SFL HTPEQVR
Sbjct: 535 VPVKEDECGIEAILATILEPLLTTCRQSAEGRLDAGDTATLMINAAHTMHGAVESFQTAADWSRDLTAEMQTWLGVLVSHEAERLLGECGLTSLLQTM-----EVMKVHGTASEQPGLDAASVERAMLDFYSTIFALAVPSFERLAPLEVREAARKGVAERIANAHQSVYNLVKDPANKYGDSSFLQHTPEQVR 723
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA) HSP 1 Score: 131 bits (329), Expect = 7.340e-32 Identity = 74/191 (38.74%), Postives = 111/191 (58.12%), Query Frame = 1
Query: 55 DPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLV-SREDSGYADRSF---LLHTPEQVR 615
D E P+L+ I+PLL CR S GLD SD AV+++NN+ ++ +L Y T +W + LT ++ +W+ VLV+ Q+D +L +A+ + A+ +PG+ SL + L SFY SLF+LVMP+F+RL P RA AR +TA +A ++E + V +E SG + S LLH P+QVR
Sbjct: 449 DREERFAPILDAFIDPLLAMCRQSASGLDRSDAAVYIVNNMVAIQSSLTRYDFTVSWVQRLTTEIGDWVDVLVKEQSDNILRHSAMAEKIECIERADPSTPLV---SQPGMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLRASARNATAQTIANSYEAFYNAVMDKERSGIDEASLKGILLHNPQQVR 636
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A2R5GVE9_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVE9_9STRA) HSP 1 Score: 131 bits (329), Expect = 8.620e-32 Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 49 AGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHR-LVSREDSGYADR---SFLLHTPEQVR 615
A + E PVLN I PL++ACR S GLD +D AV+++NN+ ++ +L Y T +W + LTA++ +W +LVR QAD +L R G+A + A+ ++PG+ +L VL SFY S+F+LVMP+F+RL P RA AR +TA +A +E + L SGY + LLH P+QVR
Sbjct: 493 AEERERRFAPVLNAFIGPLMQACRQSASGLDRADAAVYIINNLVAMQSSLTRYDFTVSWVQRLTAEIGDWTDLLVREQADAILRRSGMADKMELIARADPSQPLA---QQPGMTLDALREVLDSFYKSMFSLVMPEFDRLSSPRLRASARNATAGAIAATYEQFYATLQDLSRSGYQPAQLSNILLHDPQQVR 682
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7S3LLI7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLI7_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.100e-28 Identity = 61/187 (32.62%), Postives = 107/187 (57.22%), Query Frame = 1
Query: 61 ESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSF---LLHTPEQV 612
E++ PVLN IEPLL + S GLD +D ++++NNI +++ + Y T ++ LT ++ +W+ +V Q++++ +RCG+ + ++ + + S + G+ +SL A FY S+F++VMP+F+RL P R AR STA +A + ++ +S +SGY+ L+H PEQV
Sbjct: 233 EAEFTPVLNAFIEPLLVTFKASASGLDRTDAGIYIINNIFAIQDIMTQYDFTASFVERLTMEIGDWMDHIVTEQSNEIWKRCGMHEKMKL-------LDEVDISSQQGMDPASLQAAFSKFYQSMFSMVMPEFDRLNNPRLRTTARNSTARSIAMGYVRLYNALSNPESGYSKEELERILVHAPEQV 412
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7R9UAD7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAD7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.580e-15 Identity = 54/160 (33.75%), Postives = 85/160 (53.12%), Query Frame = 1
Query: 136 LDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQVR 615
++P++ V + ++ +V+E L + W + L + V+V + +VLE+ GLA + A AA SE P L ++ V+ +F +LFT+ +PDFER+ P + AR T VA+ + + +V E GYADRSFL+H PEQVR
Sbjct: 251 VEPAESQVLLPDDPSLVQEKSLQ--SLQHWLKTLDQGAAQLRQVVVDVHSRRVLEKTGLAALLEARAAALASEDDAPLSEYPTLGLEAVRVVIDAFNGALFTIFVPDFERITDPDEKNTARVDTMTKVADGYATIWEMVMDEKQGYADRSFLVHAPEQVR 408
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.720e-14 Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 1
Query: 13 SKQKVHTTSLVPAGD-PESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVA-------SERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADR-SFLLHTPEQVR 615
+++ V + +PA PE + P L +EP L AC G+D SD V E R +VLERCGL + +RAA +E+PGL+ ++++ + +FYS+LF+L MP+ ER+R P + AR+ ++ +A+AH +H ++S +GY D SFL HTP+QVR
Sbjct: 492 AQELVRAAATLPAATAPECALAPPLAAALEPPLDACARIARGMDASDA----------VSEPR-------------------------RRACAQVLERCGLGRVLRAAATXXXXXXXXXXXXXAAPLAEQPGLEAHTVASAMAAFYSALFSLTMPELERVRAPLVKGRARQLSSRQIADAHAHLHGVLSAPAAGYRDAASFLSHTPDQVR 666
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A6A6MQJ0_HEVBR (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MQJ0_HEVBR) HSP 1 Score: 70.5 bits (171), Expect = 3.990e-11 Identity = 47/200 (23.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query: 28 HTTSLVPAGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVA-SERPGLQESSLSAVLRSFYSSLF--TLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYAD-RSFLLHTPEQVR 615
H + +VPA + D PV++ I++P+++ + +F++N + +++ L + + + L A ++ + LV + D +L RC L+ + + G+ +E +SLS LR+F+ + +P+FE+++ P R++A A +AEA+E++++++ +GY++ +S H P+Q+R
Sbjct: 68 HDSMMVPASVKKPDFDPVMSAILDPIIQNSE--------TPSKIFLINCLCAIQQPLSGHEVAAEYVKKLGAMIENHMHALVAKEVDAILRRCSLSHKMSHF---HNSLGNGITLAEIEETSPASLSESLRAFFGLILGSESSLPEFEQIQVPKLRSEASIQVARSLAEAYELIYKVIMDPKNGYSEPKSLARHPPDQIR 256
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A8J2EY33_9DINO (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2EY33_9DINO) HSP 1 Score: 63.2 bits (152), Expect = 3.750e-8 Identity = 58/198 (29.29%), Postives = 89/198 (44.95%), Query Frame = 1
Query: 55 DPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQ---AVRAAVAAEEEMQKG------VASERPGLQESSLSAVLRSFYSSLFTLV---MPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQV 612
D + QP+L +PLL CR +P D AVF++N I ++ E L + + + E L+ HQ + L++ GL + A+R V E+ G + P L SLS+VLRSFY+SLFTL +P E++ R + R++ + EA+ +H G HT +QV
Sbjct: 422 DSLEEFQPILCAAYDPLLNHCRQMFSS-NPEDRAVFLINCISLMLEPLKTLPLAQDRAVLYSQLIQEQQMYLIEHQGQETLQKLGLLEKVTALRDVVGYPEKFPDGGFPTAAQLQQVPELHAVSLSSVLRSFYTSLFTLKALSVPHVEKISARELREETRKAVGRKILEAYIFLH-------DGLQALQVTTHTKDQV 611
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A2C9UIG2_MANES (Conserved oligomeric Golgi complex subunit 6 n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UIG2_MANES) HSP 1 Score: 59.3 bits (142), Expect = 7.920e-7 Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 157 VFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGL--------QESSLSAVLRSFYSSLF--TLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYAD-RSFLLHTPEQVR 615
+F++N + +++ L Y + + L A ++ + LV + D L RC L+ + +A+E G+ +SLS LR+F+ + +P+FE+++ P R++A A +AEA+E++++++ +GY++ +S H P+Q+R
Sbjct: 529 IFLINCLCAIQQPLSGYEVAAEYVKKLGAMIENHMQALVAKEVDASLRRCNLSHKMS-------HFHNSLANEAVGIPLAEIEETSPASLSESLRAFFGLILGSESSLPEFEQIQVPKLRSEASIQVARSLAEAYELIYKVIMDPTNGYSEPKSLARHPPDQIR 685 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87712.16302.1 >prot_H-elongata_contig87712.16302.1 ID=prot_H-elongata_contig87712.16302.1|Name=mRNA_H-elongata_contig87712.16302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp MPVPSKQKVHTTSLVPAGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDback to top mRNA from alignment at H-elongata_contig87712:285..2074- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87712.16302.1 ID=mRNA_H-elongata_contig87712.16302.1|Name=mRNA_H-elongata_contig87712.16302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-elongata_contig87712:285..2074- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87712:285..2074- >mRNA_H-elongata_contig87712.16302.1 ID=mRNA_H-elongata_contig87712.16302.1|Name=mRNA_H-elongata_contig87712.16302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig87712:285..2074- (Himanthalia elongata Himel1 dioecious)back to top |