mRNA_H-elongata_contig87712.16302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87712.16302.1
Unique NamemRNA_H-elongata_contig87712.16302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: D8LSC2_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC2_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 1.350e-109
Identity = 169/198 (85.35%), Postives = 182/198 (91.92%), Query Frame = 1
Query:   22 KVHTTSLVPAGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQVR 615
            +VH+TSLVPAG+PESDVQPVL+GI+EPLLKACRLS DGLDPSDGAVFMLNNID +REAL+A+ HTEAWT  LT +MD+WLGVLVRHQADKVLERCG+AQAVRAA AAE   Q G  +E PGLQE SLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTA+LVAEAHE VHRLVSREDSGYADRSFLLHTPEQVR
Sbjct:  165 QVHSTSLVPAGEPESDVQPVLSGIVEPLLKACRLSADGLDPSDGAVFMLNNIDAIREALVAHAHTEAWTLELTTEMDKWLGVLVRHQADKVLERCGVAQAVRAAAAAEG--QTGPMNEVPGLQERSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYADRSFLLHTPEQVR 360          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.340e-34
Identity = 80/194 (41.24%), Postives = 113/194 (58.25%), Query Frame = 1
Query:   43 VPAGDPESDVQPVLNGIIEPLLKACRLSCDG-LDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQK--GVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQVR 615
            VP  + E  ++ +L  I+EPLL  CR S +G LD  D A  M+N    +  A+ ++     W+R+LTA+M  WLGVLV H+A+++L  CGL   ++       E+ K  G ASE+PGL  +S+   +  FYS++F L +P FERL     R  AR+  A  +A AH+ V+ LV    + Y D SFL HTPEQVR
Sbjct:  535 VPVKEDECGIEAILATILEPLLTTCRQSAEGRLDAGDTATLMINAAHTMHGAVESFQTAADWSRDLTAEMQTWLGVLVSHEAERLLGECGLTSLLQTM-----EVMKVHGTASEQPGLDAASVERAMLDFYSTIFALAVPSFERLAPLEVREAARKGVAERIANAHQSVYNLVKDPANKYGDSSFLQHTPEQVR 723          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.340e-32
Identity = 74/191 (38.74%), Postives = 111/191 (58.12%), Query Frame = 1
Query:   55 DPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLV-SREDSGYADRSF---LLHTPEQVR 615
            D E    P+L+  I+PLL  CR S  GLD SD AV+++NN+  ++ +L  Y  T +W + LT ++ +W+ VLV+ Q+D +L    +A+ +     A+          +PG+   SL + L SFY SLF+LVMP+F+RL  P  RA AR +TA  +A ++E  +  V  +E SG  + S    LLH P+QVR
Sbjct:  449 DREERFAPILDAFIDPLLAMCRQSASGLDRSDAAVYIVNNMVAIQSSLTRYDFTVSWVQRLTTEIGDWVDVLVKEQSDNILRHSAMAEKIECIERADPSTPLV---SQPGMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLRASARNATAQTIANSYEAFYNAVMDKERSGIDEASLKGILLHNPQQVR 636          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A2R5GVE9_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVE9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.620e-32
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 1
Query:   49 AGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHR-LVSREDSGYADR---SFLLHTPEQVR 615
            A + E    PVLN  I PL++ACR S  GLD +D AV+++NN+  ++ +L  Y  T +W + LTA++ +W  +LVR QAD +L R G+A  +     A+         ++PG+   +L  VL SFY S+F+LVMP+F+RL  P  RA AR +TA  +A  +E  +  L     SGY      + LLH P+QVR
Sbjct:  493 AEERERRFAPVLNAFIGPLMQACRQSASGLDRADAAVYIINNLVAMQSSLTRYDFTVSWVQRLTAEIGDWTDLLVREQADAILRRSGMADKMELIARADPSQPLA---QQPGMTLDALREVLDSFYKSMFSLVMPEFDRLSSPRLRASARNATAGAIAATYEQFYATLQDLSRSGYQPAQLSNILLHDPQQVR 682          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7S3LLI7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLI7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.100e-28
Identity = 61/187 (32.62%), Postives = 107/187 (57.22%), Query Frame = 1
Query:   61 ESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSF---LLHTPEQV 612
            E++  PVLN  IEPLL   + S  GLD +D  ++++NNI  +++ +  Y  T ++   LT ++ +W+  +V  Q++++ +RCG+ + ++        + +   S + G+  +SL A    FY S+F++VMP+F+RL  P  R  AR STA  +A  +  ++  +S  +SGY+       L+H PEQV
Sbjct:  233 EAEFTPVLNAFIEPLLVTFKASASGLDRTDAGIYIINNIFAIQDIMTQYDFTASFVERLTMEIGDWMDHIVTEQSNEIWKRCGMHEKMKL-------LDEVDISSQQGMDPASLQAAFSKFYQSMFSMVMPEFDRLNNPRLRTTARNSTARSIAMGYVRLYNALSNPESGYSKEELERILVHAPEQV 412          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A7R9UAD7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAD7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.580e-15
Identity = 54/160 (33.75%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  136 LDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQVR 615
            ++P++  V + ++  +V+E  L     + W + L     +   V+V   + +VLE+ GLA  + A  AA         SE P L   ++  V+ +F  +LFT+ +PDFER+  P  +  AR  T   VA+ +  +  +V  E  GYADRSFL+H PEQVR
Sbjct:  251 VEPAESQVLLPDDPSLVQEKSLQ--SLQHWLKTLDQGAAQLRQVVVDVHSRRVLEKTGLAALLEARAAALASEDDAPLSEYPTLGLEAVRVVIDAFNGALFTIFVPDFERITDPDEKNTARVDTMTKVADGYATIWEMVMDEKQGYADRSFLVHAPEQVR 408          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.720e-14
Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   13 SKQKVHTTSLVPAGD-PESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVA-------SERPGLQESSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADR-SFLLHTPEQVR 615
            +++ V   + +PA   PE  + P L   +EP L AC     G+D SD           V E                           R    +VLERCGL + +RAA                   +E+PGL+  ++++ + +FYS+LF+L MP+ ER+R P  +  AR+ ++  +A+AH  +H ++S   +GY D  SFL HTP+QVR
Sbjct:  492 AQELVRAAATLPAATAPECALAPPLAAALEPPLDACARIARGMDASDA----------VSEPR-------------------------RRACAQVLERCGLGRVLRAAATXXXXXXXXXXXXXAAPLAEQPGLEAHTVASAMAAFYSALFSLTMPELERVRAPLVKGRARQLSSRQIADAHAHLHGVLSAPAAGYRDAASFLSHTPDQVR 666          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A6A6MQJ0_HEVBR (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MQJ0_HEVBR)

HSP 1 Score: 70.5 bits (171), Expect = 3.990e-11
Identity = 47/200 (23.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:   28 HTTSLVPAGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVA-SERPGLQESSLSAVLRSFYSSLF--TLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYAD-RSFLLHTPEQVR 615
            H + +VPA   + D  PV++ I++P+++           +   +F++N +  +++ L  +     + + L A ++  +  LV  + D +L RC L+  +         +  G+  +E      +SLS  LR+F+  +      +P+FE+++ P  R++A    A  +AEA+E++++++    +GY++ +S   H P+Q+R
Sbjct:   68 HDSMMVPASVKKPDFDPVMSAILDPIIQNSE--------TPSKIFLINCLCAIQQPLSGHEVAAEYVKKLGAMIENHMHALVAKEVDAILRRCSLSHKMSHF---HNSLGNGITLAEIEETSPASLSESLRAFFGLILGSESSLPEFEQIQVPKLRSEASIQVARSLAEAYELIYKVIMDPKNGYSEPKSLARHPPDQIR 256          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A8J2EY33_9DINO (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2EY33_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 3.750e-8
Identity = 58/198 (29.29%), Postives = 89/198 (44.95%), Query Frame = 1
Query:   55 DPESDVQPVLNGIIEPLLKACRLSCDGLDPSDGAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQ---AVRAAVAAEEEMQKG------VASERPGLQESSLSAVLRSFYSSLFTLV---MPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHTPEQV 612
            D   + QP+L    +PLL  CR      +P D AVF++N I ++ E L      +      +  + E    L+ HQ  + L++ GL +   A+R  V   E+   G         + P L   SLS+VLRSFY+SLFTL    +P  E++     R + R++    + EA+  +H        G        HT +QV
Sbjct:  422 DSLEEFQPILCAAYDPLLNHCRQMFSS-NPEDRAVFLINCISLMLEPLKTLPLAQDRAVLYSQLIQEQQMYLIEHQGQETLQKLGLLEKVTALRDVVGYPEKFPDGGFPTAAQLQQVPELHAVSLSSVLRSFYTSLFTLKALSVPHVEKISARELREETRKAVGRKILEAYIFLH-------DGLQALQVTTHTKDQV 611          
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Match: A0A2C9UIG2_MANES (Conserved oligomeric Golgi complex subunit 6 n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UIG2_MANES)

HSP 1 Score: 59.3 bits (142), Expect = 7.920e-7
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  157 VFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLERCGLAQAVRAAVAAEEEMQKGVASERPGL--------QESSLSAVLRSFYSSLF--TLVMPDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYAD-RSFLLHTPEQVR 615
            +F++N +  +++ L  Y     + + L A ++  +  LV  + D  L RC L+  +             +A+E  G+          +SLS  LR+F+  +      +P+FE+++ P  R++A    A  +AEA+E++++++    +GY++ +S   H P+Q+R
Sbjct:  529 IFLINCLCAIQQPLSGYEVAAEYVKKLGAMIENHMQALVAKEVDASLRRCNLSHKMS-------HFHNSLANEAVGIPLAEIEETSPASLSESLRAFFGLILGSESSLPEFEQIQVPKLRSEASIQVARSLAEAYELIYKVIMDPTNGYSEPKSLARHPPDQIR 685          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87712.16302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LSC2_ECTSI1.350e-10985.35Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2S2C7_9STRA1.340e-3441.24Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2SLV6_9STRA7.340e-3238.74Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A2R5GVE9_9STRA8.620e-3239.90Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S3LLI7_9STRA5.100e-2832.62Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7R9UAD7_9STRA2.580e-1533.75Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A836CBI3_9STRA1.720e-1430.48Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6A6MQJ0_HEVBR3.990e-1123.50Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A8J2EY33_9DINO3.750e-829.29Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A2C9UIG2_MANES7.920e-724.39Conserved oligomeric Golgi complex subunit 6 n=4 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87712contigH-elongata_contig87712:285..2074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.8
Seed ortholog evalue1.1e-88
Seed eggNOG ortholog2880.D8LSC2
Preferred nameCOG6
KEGG koko:K20293
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size615
Cds size615
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87712.16302.1prot_H-elongata_contig87712.16302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87712 285..2074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.1344032-CDS-H-elongata_contig87712:284..5211622931278.1344032-CDS-H-elongata_contig87712:284..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 285..521 -
1691679770.6452572-CDS-H-elongata_contig87712:284..5211691679770.6452572-CDS-H-elongata_contig87712:284..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 285..521 -
1622931278.1508946-CDS-H-elongata_contig87712:727..8141622931278.1508946-CDS-H-elongata_contig87712:727..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 728..814 -
1691679770.6571727-CDS-H-elongata_contig87712:727..8141691679770.6571727-CDS-H-elongata_contig87712:727..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 728..814 -
1622931278.1644523-CDS-H-elongata_contig87712:1159..12401622931278.1644523-CDS-H-elongata_contig87712:1159..1240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 1160..1240 -
1691679770.6678584-CDS-H-elongata_contig87712:1159..12401691679770.6678584-CDS-H-elongata_contig87712:1159..1240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 1160..1240 -
1622931278.1893473-CDS-H-elongata_contig87712:1864..20741622931278.1893473-CDS-H-elongata_contig87712:1864..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 1865..2074 -
1691679770.6845706-CDS-H-elongata_contig87712:1864..20741691679770.6845706-CDS-H-elongata_contig87712:1864..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87712 1865..2074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87712.16302.1

>prot_H-elongata_contig87712.16302.1 ID=prot_H-elongata_contig87712.16302.1|Name=mRNA_H-elongata_contig87712.16302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MPVPSKQKVHTTSLVPAGDPESDVQPVLNGIIEPLLKACRLSCDGLDPSD
GAVFMLNNIDVVREALLAYGHTEAWTRNLTADMDEWLGVLVRHQADKVLE
RCGLAQAVRAAVAAEEEMQKGVASERPGLQESSLSAVLRSFYSSLFTLVM
PDFERLRRPGTRADARRSTALLVAEAHEIVHRLVSREDSGYADRSFLLHT
PEQVR
back to top

mRNA from alignment at H-elongata_contig87712:285..2074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87712.16302.1 ID=mRNA_H-elongata_contig87712.16302.1|Name=mRNA_H-elongata_contig87712.16302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-elongata_contig87712:285..2074- (Himanthalia elongata Himel1 dioecious)
ATGCCCGTCCCGTCAAAACAAAAGGTGCACACGACGTCGCTCGTGCCCGC GGGCGATCCGGAGTCGGACGTGCAGCCGGTGCTAAATGGCATTATCGAAC CATTATTGAAGGCCTGCCGCCTGAGTTGCGATGGGCTGGACCCGTCTGAT GGGGCTGTCTTCATGCTTAATAATATCGACGTCGTTCGGGAGGCTCTCCT GGCATATGGGGTGGGTTATCTTGGTGGTCGCAATGGTGTCTGTTTTTGTC TGTTTATTTGTTTTACAGAATCTTGAGATATTTATTTGTTCGCCCCAACC CCTCTCGAAAGTAGACGAGGTTTATCTTCGGTATATAAAATGGCGGAGTG TCGTCAGTGTATTCATGAAATCCGCGCTCTACGCGTACTGAGATTGTCGA CCGTCATCGCCATCGCCATCGCCACACCCAGAATCCTGGAGTTTGATCCA TATAGCTGCGTTCCCGGATGCGAGGCACCATCGAATGCGCGATAGTTCTA ATAATAGTAATCTATTGGTGTGCTGGGGACGGAGAAGGGTGGGAGGGGTG CCTTTTTCCCGCTATCTCCGCAGAGTGAAGGATCTCGATCTTCAACTGTG TGGACGTCGCTTGCGTCTGATATTCTCAACCCCTCCGCTGCTTTCACTAC CTAGACTGCTCCTAGAGTGTTACTGAAGTTTTCACATTTTTTTATTATTT ACCGCTCGATACCTTTGATTATTCGTCCCTCACACGCCCCCTTTACCTGA TCTGATGCACGTGCCGCCGAACTACGGTGATATGGTGCTCCGTCTGACGG CCCCCTATAACCTTTGACTTGGTGATGCGCGCAGCACACGGAAGCATGGA CCCGAAATCTGACGGCGGACATGGACGAGTGGTTGGGTGTGCTGGTCCGG CATCAGGCAGACAAGGTCCGTGTGAAGTTTGAACCTAGCGGTCACGTCAC GTCTCTGCTCCGCTCCGCTCCTATCCTGCGGTCACTGATAACCGACTATA TTTGGCGCGGTGTTTTCTTGTACTCTTACGTTACGTCGTCGTCGTCGGGT CCAGTCGAGGCCCCACGAAGTGGCTTTGGGCACGAACCTGTCCGTAGGGA TTTTGGTTGGTTGGTGATTGCTCCATTTTATCATGGTTCGTTTTCGTCGC GATGTTGTATGCCCCACTTCACCGTTGATTTTTTTTGTATTTACTCTGTA GTAGTAATGTGTTAACCTTGTTTCCCGTTCCTTCCTTTGGGTATGTTGGC CTCTGGGCAGGTACTAGAGCGGTGTGGCCTTGCCCAGGCAGTGAGGGCAG CCGTCGCCGCGGAGGAAGAGATGCAAAAAGGCGTCGCCAGCGAACGGGTA ACTTCGCGATGCCTCCCTGTTCCACTGCCCGCTCCCAGAAACCGTCCTCA AGACGTGATTATCCTCTGACTGTCATAGTGATTTTACTTAGCATATGTTT TCGAAAAAAGTGGCCCCTTCGAACAATCGATCCCATATTTTTTTTCGTTT TGTTATCTCCATGAGACACATCAAAACCTCTCCGTCTGTTTTACGCGACG CAGCCCGGTCTGCAGGAGAGCTCGCTGTCCGCGGTCCTTCGATCGTTTTA TTCGTCCCTCTTCACGCTGGTGATGCCGGACTTCGAGCGACTGCGGCGGC CGGGCACCCGCGCCGACGCCAGACGCAGCACAGCGCTGCTGGTGGCGGAG GCGCACGAGATCGTACATCGACTGGTATCCAGGGAGGACAGCGGCTACGC CGACCGCTCGTTCTTGTTGCACACGCCAGAGCAGGTTAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig87712:285..2074-

>mRNA_H-elongata_contig87712.16302.1 ID=mRNA_H-elongata_contig87712.16302.1|Name=mRNA_H-elongata_contig87712.16302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig87712:285..2074- (Himanthalia elongata Himel1 dioecious)
ATGCCCGTCCCGTCAAAACAAAAGGTGCACACGACGTCGCTCGTGCCCGC
GGGCGATCCGGAGTCGGACGTGCAGCCGGTGCTAAATGGCATTATCGAAC
CATTATTGAAGGCCTGCCGCCTGAGTTGCGATGGGCTGGACCCGTCTGAT
GGGGCTGTCTTCATGCTTAATAATATCGACGTCGTTCGGGAGGCTCTCCT
GGCATATGGGATGCCCGTCCCGTCAAAACAAAAGGTGCACACGACGTCGC
TCGTGCCCGCGGGCGATCCGGAGTCGGACGTGCAGCCGGTGCTAAATGGC
ATTATCGAACCATTATTGAAGGCCTGCCGCCTGAGTTGCGATGGGCTGGA
CCCGTCTGATGGGGCTGTCTTCATGCTTAATAATATCGACGTCGTTCGGG
AGGCTCTCCTGGCATATGGGCACACGGAAGCATGGACCCGAAATCTGACG
GCGGACATGGACGAGTGGTTGGGTGTGCTGGTCCGGCATCAGGCAGACAA
GCACACGGAAGCATGGACCCGAAATCTGACGGCGGACATGGACGAGTGGT
TGGGTGTGCTGGTCCGGCATCAGGCAGACAAGGTACTAGAGCGGTGTGGC
CTTGCCCAGGCAGTGAGGGCAGCCGTCGCCGCGGAGGAAGAGATGCAAAA
AGGCGTCGCCAGCGAACGGGTACTAGAGCGGTGTGGCCTTGCCCAGGCAG
TGAGGGCAGCCGTCGCCGCGGAGGAAGAGATGCAAAAAGGCGTCGCCAGC
GAACGGCCCGGTCTGCAGGAGAGCTCGCTGTCCGCGGTCCTTCGATCGTT
TTATTCGTCCCTCTTCACGCTGGTGATGCCGGACTTCGAGCGACTGCGGC
GGCCGGGCACCCGCGCCGACGCCAGACGCAGCACAGCGCTGCTGGTGGCG
GAGGCGCACGAGATCGTACATCGACTGGTATCCAGGGAGGACAGCGGCTA
CGCCGACCGCTCGTTCTTGTTGCACACGCCAGAGCAGGTTAGGCCCGGTC
TGCAGGAGAGCTCGCTGTCCGCGGTCCTTCGATCGTTTTATTCGTCCCTC
TTCACGCTGGTGATGCCGGACTTCGAGCGACTGCGGCGGCCGGGCACCCG
CGCCGACGCCAGACGCAGCACAGCGCTGCTGGTGGCGGAGGCGCACGAGA
TCGTACATCGACTGGTATCCAGGGAGGACAGCGGCTACGCCGACCGCTCG
TTCTTGTTGCACACGCCAGAGCAGGTTAGG
back to top