mRNA_H-elongata_contig121263.1630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121263.1630.1
Unique NamemRNA_H-elongata_contig121263.1630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.680e-33
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 DAAMSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            D  MSRLYIGNLPMDMKEKDLEDIFYKYGKITD+QLKMPERPPAFGFVTF+DPRDADEAVRAR
Sbjct:   58 DCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRAR 120
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.180e-32
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 DAAMSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            D  MSRLYIGNLPMDMKEKDLEDIFYKYGKITD+QLKMPERPPAFGFVTF+D RDADEAVRAR
Sbjct:   50 DRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 112
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A7S2B3I3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-23
Identity = 38/58 (65.52%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 RLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TFDD RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.120e-23
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:   10 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF D RDA+EAVRAR
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRAR 60
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.770e-22
Identity = 38/58 (65.52%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 RLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TFDD RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.020e-22
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:   10 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            M+R+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV FDD RDA++AVRAR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRAR 60
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A7S0NDV3_9CRYP (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0NDV3_9CRYP)

HSP 1 Score: 93.2 bits (230), Expect = 8.370e-22
Identity = 38/63 (60.32%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 DAAMSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            ++AMSR+Y+GNLP+D++ +D+ED+FYKYG+I D+ LK P RPPAF FV+F+ P DA++AVR R
Sbjct:    4 ESAMSRIYVGNLPLDIRTRDVEDLFYKYGRIRDIDLKTPSRPPAFAFVSFEYPEDAEDAVRGR 66
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A803KZU8_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KZU8_CHEQI)

HSP 1 Score: 89.7 bits (221), Expect = 2.470e-21
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    7 AMSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            A   +Y+GNLP+D+KE +LED+FYKYG+I D+++K+P RPP + FV F+DPRDA EA+R R
Sbjct:   15 ASRTIYVGNLPLDVKEWELEDLFYKYGRIVDIEMKLPPRPPGYSFVEFEDPRDAQEAIRGR 75
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A418AM63_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AM63_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.210e-21
Identity = 34/59 (57.63%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   13 SRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            +R+Y+GNLPMD++ ++L+D+FYKYG+I D+ +K P RPPAF F+ FD PRDA++A+R R
Sbjct:    3 TRVYVGNLPMDVRTRELDDLFYKYGRILDIDIKQPSRPPAFAFIEFDHPRDAEDAIRGR 61
[Close]
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: T0QQQ1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQQ1_SAPDV)

HSP 1 Score: 89.4 bits (220), Expect = 5.310e-21
Identity = 34/58 (58.62%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   16 RLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 189
            R+Y+GNLPMD++ ++++D+FYKYG+I D+ +K+P RPPAF FV F+D RDAD+A+R R
Sbjct:    4 RIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGR 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN34_9PHAE1.680e-3393.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPT5_ECTSI1.180e-3292.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2B3I3_9STRA1.080e-2365.52Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D8LB97_ECTSI2.120e-2370.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B3Q3_9STRA5.770e-2265.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YQ88_9STRA6.020e-2266.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NDV3_9CRYP8.370e-2260.32Hypothetical protein n=2 Tax=Geminigeraceae TaxID=... [more]
A0A803KZU8_CHEQI2.470e-2159.02RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A418AM63_9STRA5.210e-2157.63RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
T0QQQ1_SAPDV5.310e-2158.62Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121263contigH-elongata_contig121263:1665..1853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4e-26
Seed eggNOG ortholog2880.D8LPT5
Preferred nameSR30
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0035061,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-18_002400.1
Exons1
Model size189
Cds size180
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.5747256-UTR-H-elongata_contig121263:1664..16731622929713.5747256-UTR-H-elongata_contig121263:1664..1673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121263 1665..1673 +
1691679128.9461339-UTR-H-elongata_contig121263:1664..16731691679128.9461339-UTR-H-elongata_contig121263:1664..1673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121263 1665..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.5852296-CDS-H-elongata_contig121263:1673..18531622929713.5852296-CDS-H-elongata_contig121263:1673..1853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121263 1674..1853 +
1691679128.9589586-CDS-H-elongata_contig121263:1673..18531691679128.9589586-CDS-H-elongata_contig121263:1673..1853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121263 1674..1853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121263.1630.1prot_H-elongata_contig121263.1630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121263 1674..1853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121263.1630.1

>prot_H-elongata_contig121263.1630.1 ID=prot_H-elongata_contig121263.1630.1|Name=mRNA_H-elongata_contig121263.1630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDP
RDADEAVRAR
back to top

mRNA from alignment at H-elongata_contig121263:1665..1853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121263.1630.1 ID=mRNA_H-elongata_contig121263.1630.1|Name=mRNA_H-elongata_contig121263.1630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig121263:1665..1853+ (Himanthalia elongata Himel1 dioecious)
GACGCTGCCATGTCTCGCTTGTACATCGGAAACCTTCCCATGGACATGAA
AGAAAAGGACCTTGAAGATATCTTCTATAAATACGGAAAAATTACCGACC
TGCAGCTCAAGATGCCGGAGCGGCCCCCGGCCTTCGGCTTCGTGACATTC
GACGACCCCAGGGATGCCGACGAAGCCGTTAGAGCCAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig121263:1665..1853+

>mRNA_H-elongata_contig121263.1630.1 ID=mRNA_H-elongata_contig121263.1630.1|Name=mRNA_H-elongata_contig121263.1630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig121263:1665..1853+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCGCTTGTACATCGGAAACCTTCCCATGGACATGAAAGAAAAGGA
CCTTGAAGATATCTTCTATAAATACGGAAAAATTACCGACCTGCAGCTCA
AGATGCCGGAGCGGCCCCCGGCCTTCGGCTTCGTGACATTCGACGACCCC
AGGGATGCCGACGAAGCCGTTAGAGCCAGGATGTCTCGCTTGTACATCGG
AAACCTTCCCATGGACATGAAAGAAAAGGACCTTGAAGATATCTTCTATA
AATACGGAAAAATTACCGACCTGCAGCTCAAGATGCCGGAGCGGCCCCCG
GCCTTCGGCTTCGTGACATTCGACGACCCCAGGGATGCCGACGAAGCCGT
TAGAGCCAGG
back to top