prot_H-elongata_contig121263.1630.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121263.1630.1
Unique Nameprot_H-elongata_contig121263.1630.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length60
Homology
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.040e-33
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            MSRLYIGNLPMDMKEKDLEDIFYKYGKITD+QLKMPERPPAFGFVTF+DPRDADEAVRAR
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRAR 120          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.070e-32
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            MSRLYIGNLPMDMKEKDLEDIFYKYGKITD+QLKMPERPPAFGFVTF+D RDADEAVRAR
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 112          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A7S2B3I3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.700e-24
Identity = 38/58 (65.52%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    3 RLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TFDD RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.330e-23
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF D RDA+EAVRAR
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRAR 60          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.640e-22
Identity = 38/58 (65.52%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    3 RLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TFDD RDAD+AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.780e-22
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            M+R+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV FDD RDA++AVRAR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRAR 60          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A803KZU8_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KZU8_CHEQI)

HSP 1 Score: 89.7 bits (221), Expect = 2.180e-21
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            +Y+GNLP+D+KE +LED+FYKYG+I D+++K+P RPP + FV F+DPRDA EA+R R
Sbjct:   19 IYVGNLPLDVKEWELEDLFYKYGRIVDIEMKLPPRPPGYSFVEFEDPRDAQEAIRGR 75          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A418AM63_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AM63_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.240e-21
Identity = 34/59 (57.63%), Postives = 50/59 (84.75%), Query Frame = 0
Query:    2 SRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            +R+Y+GNLPMD++ ++L+D+FYKYG+I D+ +K P RPPAF F+ FD PRDA++A+R R
Sbjct:    3 TRVYVGNLPMDVRTRELDDLFYKYGRILDIDIKQPSRPPAFAFIEFDHPRDAEDAIRGR 61          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: T0QQQ1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQQ1_SAPDV)

HSP 1 Score: 89.7 bits (221), Expect = 3.310e-21
Identity = 34/58 (58.62%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    3 RLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            R+Y+GNLPMD++ ++++D+FYKYG+I D+ +K+P RPPAF FV F+D RDAD+A+R R
Sbjct:    4 RIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGR 61          
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Match: A0A7S3G4Y7_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4Y7_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 3.720e-21
Identity = 37/60 (61.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDPRDADEAVRAR 60
            M+R+++GNLP+D++E+++ED+FYKYG+I D+ +K P RPPAF FV FDDPRDA++AVR R
Sbjct:   17 MTRVFVGNLPLDVEEREIEDLFYKYGRIRDIDVKRPSRPPAFCFVDFDDPRDAEDAVRGR 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121263.1630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN34_9PHAE8.040e-3396.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPT5_ECTSI4.070e-3295.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2B3I3_9STRA6.700e-2465.52Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D8LB97_ECTSI1.330e-2370.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B3Q3_9STRA3.640e-2265.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YQ88_9STRA3.780e-2266.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A803KZU8_CHEQI2.180e-2161.40RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A418AM63_9STRA3.240e-2157.63RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
T0QQQ1_SAPDV3.310e-2158.62Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7S3G4Y7_9EUKA3.720e-2161.67Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 3..60
e-value: 1.6E-6
score: 37.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..59
e-value: 1.0E-16
score: 60.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..60
score: 14.931
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..60
e-value: 5.5E-18
score: 67.0
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 4..60
NoneNo IPR availablePANTHERPTHR23147:SF140coord: 4..60
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121263contigH-elongata_contig121263:1674..1853 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121263.1630.1mRNA_H-elongata_contig121263.1630.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121263 1665..1853 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121263.1630.1 ID=prot_H-elongata_contig121263.1630.1|Name=mRNA_H-elongata_contig121263.1630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFDDP
RDADEAVRAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf