prot_H-elongata_contig87463.16283.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87463.16283.1
Unique Nameprot_H-elongata_contig87463.16283.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length170
Homology
BLAST of mRNA_H-elongata_contig87463.16283.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 8.720e-30
Identity = 100/171 (58.48%), Postives = 116/171 (67.84%), Query Frame = 0
Query:    1 FVGSS--TSARLITVRPASSLRMASDATVPGLIKKTRDLKLLSTAANLGLLSKLEKAGLTLKDVEKLLPLIDENDLIGFAKGLGPELLEAAPTAXXXXXXXXXXXXXXXXXXXXXXXAVALASIAAGLALIVVLPHNSISGIALETFFVIPFLFVLPAVCAVGGLALSGLK 169
            FVGS    S+ +    P+SS+RMA+D TVP L+K+T  LKLL                 TLKDVEKLLPL+DENDLIG AKG+GP+LL+ AP  XXXXXXXXXXXXXXXXXXXXXXX         G AL+ VLP +S+S IA+ETF   P LFVLPAVC V G AL+ LK
Sbjct:   20 FVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLK 190          
BLAST of mRNA_H-elongata_contig87463.16283.1 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.080e-13
Identity = 71/154 (46.10%), Postives = 88/154 (57.14%), Query Frame = 0
Query:   12 TVRPASSLR----MASDATVPGLIKKTRDLKLLSTAANLGLLSKLEKAGLTLKDVEKLLPLIDENDLIGFAKGLGPELLEAAPTAXXXXXXXXXXXXXXXXXXXXXXXAVALASIAAGLALIVVLPHNSISGIALETFFVIPFLFVLPAVCAVG 161
            +VRPA + R      S  +V  L+ KT +LKLLSTA+            LTL+D+E  LP +D+ D I   K L P+LL  AP A   XXXXXXXXXXXXXXXXX     A  S+ AGLA I  +P +SI  IAL+ F  +P L + P    VG
Sbjct:   26 SVRPAVARRGMTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVG 179          
BLAST of mRNA_H-elongata_contig87463.16283.1 vs. uniprot
Match: A0A0G4F6S3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6S3_VITBC)

HSP 1 Score: 57.8 bits (138), Expect = 3.860e-7
Identity = 47/149 (31.54%), Postives = 78/149 (52.35%), Query Frame = 0
Query:   15 PASSLRMASDA---TVPGLIKKTRDLKLLSTAANLGLLSKLEKAGLTLKDVEKLLPLIDENDLIGFAKGLGPELLEAAPTAXXXXXXXXXXXXXXXXXXXXXXXAVALASIAAGLALIVVLPHNSISGIALETFFVIPFLFVLPAVCAV 160
            PA+  ++A+D     VP ++K+T +L+LLS  A            LTL  +E LL ++DE   +   + + P+++ A P    XXXXXXX               +++AS A G+  ++ LP +S++ +AL+TF  +P   +LP V  V
Sbjct:   40 PATRRQVAADEYEDVVPRVLKRTEELQLLSKLAEAXXXXXXXXXXLTLSQIEPLLKVVDEQYALYGLEEVAPKIVPALPALLEXXXXXXXVASAVLSTPWFVFVLLSIASFAGGVGQLLYLPDDSVTSVALQTFLFVPLAVILPGVALV 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87463.16283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0T4_ECTSI8.720e-3058.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z532_9STRA6.080e-1346.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4F6S3_VITBC3.860e-731.54Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..112
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 133..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 113..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 166..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..107
NoneNo IPR availableTMHMMTMhelixcoord: 85..107
NoneNo IPR availableTMHMMTMhelixcoord: 114..131
NoneNo IPR availableTMHMMTMhelixcoord: 146..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87463contigH-elongata_contig87463:364..2691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87463.16283.1mRNA_H-elongata_contig87463.16283.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87463 364..2691 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87463.16283.1 ID=prot_H-elongata_contig87463.16283.1|Name=mRNA_H-elongata_contig87463.16283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
FVGSSTSARLITVRPASSLRMASDATVPGLIKKTRDLKLLSTAANLGLLS
KLEKAGLTLKDVEKLLPLIDENDLIGFAKGLGPELLEAAPTALAAAPAAL
PIVASALSIPGEALFAVALASIAAGLALIVVLPHNSISGIALETFFVIPF
LFVLPAVCAVGGLALSGLK*
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