mRNA_H-elongata_contig87463.16283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87463.16283.1
Unique NamemRNA_H-elongata_contig87463.16283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87463.16283.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 8.720e-30
Identity = 100/171 (58.48%), Postives = 116/171 (67.84%), Query Frame = 1 
Query:    1 FVGSS--TSARLITVRPASSLRMASDATVPGLIKKTRDLKLLSTAANLGLLSKLEKAGLTLKDVEKLLPLIDENDLIGFAKGLGPELLEAAPTAXXXXXXXXXXXXXXXXXXXXXXXAVALASIAAGLALIVVLPHNSISGIALETFFVIPFLFVLPAVCAVGGLALSGLK 507
            FVGS    S+ +    P+SS+RMA+D TVP L+K+T  LKLL                 TLKDVEKLLPL+DENDLIG AKG+GP+LL+ AP  XXXXXXXXXXXXXXXXXXXXXXX         G AL+ VLP +S+S IA+ETF   P LFVLPAVC V G AL+ LK
Sbjct:   20 FVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLK 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87463.16283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0T4_ECTSI8.720e-3058.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87463contigH-elongata_contig87463:364..2691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionProtein of unknown function DUF1118
Ec32 orthologEc-23_001580.1
Exons4
Model size510
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87463.16283.1prot_H-elongata_contig87463.16283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87463 364..2691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931275.1729228-CDS-H-elongata_contig87463:363..5001622931275.1729228-CDS-H-elongata_contig87463:363..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 364..500 -
1691679769.3160563-CDS-H-elongata_contig87463:363..5001691679769.3160563-CDS-H-elongata_contig87463:363..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 364..500 -
1622931275.1888003-CDS-H-elongata_contig87463:1342..15101622931275.1888003-CDS-H-elongata_contig87463:1342..1510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 1343..1510 -
1691679769.3333812-CDS-H-elongata_contig87463:1342..15101691679769.3333812-CDS-H-elongata_contig87463:1342..1510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 1343..1510 -
1622931275.2013695-CDS-H-elongata_contig87463:1873..19521622931275.2013695-CDS-H-elongata_contig87463:1873..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 1874..1952 -
1691679769.3457606-CDS-H-elongata_contig87463:1873..19521691679769.3457606-CDS-H-elongata_contig87463:1873..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 1874..1952 -
1622931275.2249687-CDS-H-elongata_contig87463:2565..26911622931275.2249687-CDS-H-elongata_contig87463:2565..2691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 2566..2691 -
1691679769.356373-CDS-H-elongata_contig87463:2565..26911691679769.356373-CDS-H-elongata_contig87463:2565..2691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87463 2566..2691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87463.16283.1

>prot_H-elongata_contig87463.16283.1 ID=prot_H-elongata_contig87463.16283.1|Name=mRNA_H-elongata_contig87463.16283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
FVGSSTSARLITVRPASSLRMASDATVPGLIKKTRDLKLLSTAANLGLLS
KLEKAGLTLKDVEKLLPLIDENDLIGFAKGLGPELLEAAPTALAAAPAAL
PIVASALSIPGEALFAVALASIAAGLALIVVLPHNSISGIALETFFVIPF
LFVLPAVCAVGGLALSGLK*
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mRNA from alignment at H-elongata_contig87463:364..2691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87463.16283.1 ID=mRNA_H-elongata_contig87463.16283.1|Name=mRNA_H-elongata_contig87463.16283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2328bp|location=Sequence derived from alignment at H-elongata_contig87463:364..2691- (Himanthalia elongata Himel1 dioecious)
TTCGTAGGGTCGTCGACGTCCGCGCGGTTGATCACGGTGCGTCCCGCGAG
TAGCCTGAGGATGGCATCGGACGCGACGGTGCCGGGGCTGATAAAAAAGA
CGCGTGACCTGAAGCTCCTCTCGACGGTAAGCGAAGCACATGCATGACCA
GTAGGAATATATTGAGGACCGGGCGCATTGCAGTACGCGGCATCGTACAC
AGGGTACGGGTCAGTGCTGTAACCGCAACGGTATTAGAACCCGGAAGTTG
GCCTGCAAGAAAGGTTAGGAGAGAGAGGGGGGCGTGCAAGTGTTGGTGGT
GCCTAGCTCCCCCCCCCGCGTCCTCTCTCGGCTGCTTGTCGTAGCGATGT
CCTTGAGGCCCCCCGCGCTTTTCTCGTCTCTCTCGCGCGCGCTGCCGTGC
TTGTGTTACCGTTGATAGGGCGCCTTTTTCTTTGATGCAGGACCTAGTTT
TGCGTTGGTGTGTTTACAAGTTTGAATTATTGGTTTATTGATAAAAATTA
TTGGTGCACCTGTATATTGATTAATCGGTTGATTATTTGATTCATGACTT
GACTTTCTTTCTTTCTTTATTTATCTATTGATTGTTTGTTTCATCAATTA
ATAGGTTAATTGATGATAAAAATGGTTGATATGTTGATGCATTATTATTA
TGATATATATATATATATAATTGTTTATTTGACTGATAAATTTATTGATT
TTTCGATAAATTGGTGGATTTAATTATAAAACTTGACAGGCGGCGAACCT
GGGACTCCTCTCCAAGCTAGAGAAGGCGGGCCTCACCCTGAAGGACGTTG
AAAAGCTCCTCCCCCTCAGTGAGCAAACATTCGAGCGCGCAATCGATACT
GGTCCCAGCTAAACGACAAGCGTACAATAGTAATGGTGCTCCATTGACGT
TATACTGACTGCCTAACTACTGAAAGAGGTGGAGGGGTGACAGGGGACAC
CTCTCGACCGGGTGGACGCAGAATCCTTTGCCACCTCTGAACCATTCACA
ACCGCCCCCCCCCCCCCTCCCTCCACTACCGCAGTGAGTCCAGGTGAAGG
TTGTGCCCCGAGCTTCCACGCTCATTCGAAAAAAATATCCGTTTCATGCC
CTCTTCGCCAACCCTCGCACCACCCATTCGGCCTCGTGTCGCATCGCGTC
GCCTTGCCGTCTTTTTTTGTTTCTGACGCAGTCGACGAGAACGATCTCAT
CGGTTTCGCCAAGGGCCTTGGGCCGGAACTCCTCGAGGCTGCACCGACCG
CCCTCGCGGCAGCGCCGGCCGCCCTCCCGATTGTGGCGAGCGCCCTCAGC
ATCCCTGGGGAGGCTCTGTTTGCGGTCGCCCTCGCGTCCATCGCCGCCGG
TGTGTGCTGCTATTTCCACCGCTCAAACTCGGCAGGATTTTTGGCATGGA
TTTTCAATAAAAACAAGGGAGAGAGGATTTTTTTTCCGTATGTCCCCAAT
TTCAGGGGGGGGGGGTCGCGAAAGCATTTTGTTCAGAGAAAGATTTAGTG
CATCATTCTGTATTGGAATGAGCTGTGTAATTGCTTCGGGGCATGTTAGC
ACCACCCCCACGAGGGGATGCTTTAAAACACACGCCACACACACACTGTC
TGAAGACAGGAACAGATTCGTCAAATGCCCCCTTCCCCCCCCCATCAGAT
CACCGGGAAACGTTTGTCTCTAACGCAACAAGAGCTATGCTAGATATTGC
TCTAAAAAATATGGCAAGAGGCAAGATTGAGGGGGGGGGGGATTTCCGGA
AAAAAACTTTCAAGAGAGTTTTCCCGATGTTTGCTTTGTAGCTCTTCCGC
CTTTTTAATATTATCTTGAGTATGACCCATCACTCTGACCGTGTTGTCTT
TTTCTTACATTTTTGTATTGCGTTGTGTGTGTATTTATTAAATTGCACAA
TAACCGCGCAATCCGGCCCTGTAACCTATCCATTCTATGCTACTGCATGT
AACCCATCTATCTGGGGGGTACTTTTCGGTGTTTGTATGTGTCTGTTTAT
TAATGTGTATGTGCTCTTGCCACAGACGCAGACATTACGCGGCCTAAGGC
GCCTTTGCCCAACTTTTTGCCGGACCGAGCAACATATTTACCCTCCCCGC
TATCCCCCCCCCCCCCCACCCCCATCTCTCTTCCATTCCTACCCCCCGGA
AACAATCGTCCCTCTCTGTCCCCTCTTCCTATCCTCTCTAGGCTTGGCGT
TGATCGTGGTGCTGCCACACAACTCTATATCGGGAATCGCACTCGAGACC
TTCTTCGTCATCCCATTCCTGTTCGTGCTGCCCGCCGTCTGCGCCGTCGG
CGGCCTCGCCCTCTCCGGCCTAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig87463:364..2691-

>mRNA_H-elongata_contig87463.16283.1 ID=mRNA_H-elongata_contig87463.16283.1|Name=mRNA_H-elongata_contig87463.16283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig87463:364..2691- (Himanthalia elongata Himel1 dioecious)
TTCGTAGGGTCGTCGACGTCCGCGCGGTTGATCACGGTGCGTCCCGCGAG
TAGCCTGAGGATGGCATCGGACGCGACGGTGCCGGGGCTGATAAAAAAGA
CGCGTGACCTGAAGCTCCTCTCGACGTTCGTAGGGTCGTCGACGTCCGCG
CGGTTGATCACGGTGCGTCCCGCGAGTAGCCTGAGGATGGCATCGGACGC
GACGGTGCCGGGGCTGATAAAAAAGACGCGTGACCTGAAGCTCCTCTCGA
CGGCGGCGAACCTGGGACTCCTCTCCAAGCTAGAGAAGGCGGGCCTCACC
CTGAAGGACGTTGAAAAGCTCCTCCCCCTCAGCGGCGAACCTGGGACTCC
TCTCCAAGCTAGAGAAGGCGGGCCTCACCCTGAAGGACGTTGAAAAGCTC
CTCCCCCTCATCGACGAGAACGATCTCATCGGTTTCGCCAAGGGCCTTGG
GCCGGAACTCCTCGAGGCTGCACCGACCGCCCTCGCGGCAGCGCCGGCCG
CCCTCCCGATTGTGGCGAGCGCCCTCAGCATCCCTGGGGAGGCTCTGTTT
GCGGTCGCCCTCGCGTCCATCGCCGCCGTCGACGAGAACGATCTCATCGG
TTTCGCCAAGGGCCTTGGGCCGGAACTCCTCGAGGCTGCACCGACCGCCC
TCGCGGCAGCGCCGGCCGCCCTCCCGATTGTGGCGAGCGCCCTCAGCATC
CCTGGGGAGGCTCTGTTTGCGGTCGCCCTCGCGTCCATCGCCGCCGGCTT
GGCGTTGATCGTGGTGCTGCCACACAACTCTATATCGGGAATCGCACTCG
AGACCTTCTTCGTCATCCCATTCCTGTTCGTGCTGCCCGCCGTCTGCGCC
GTCGGCGGCCTCGCCCTCTCCGGCCTAAAGTGAGCTTGGCGTTGATCGTG
GTGCTGCCACACAACTCTATATCGGGAATCGCACTCGAGACCTTCTTCGT
CATCCCATTCCTGTTCGTGCTGCCCGCCGTCTGCGCCGTCGGCGGCCTCG
CCCTCTCCGGCCTAAAGTGA
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