mRNA_H-elongata_contig12126.1628.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.710e-50 Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVL 264
IFAEDM+D+MC FALETSQEAFQLTITKGQVFTTIAS IR+AFEK++GRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL+WR VL
Sbjct: 8 IFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVL 95
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI) HSP 1 Score: 163 bits (413), Expect = 4.160e-50 Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVL 264
IFAEDM+D+MCQFALETSQEAFQLTITKGQVFTTIAS IR+AFEK++GRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL+WR V+
Sbjct: 8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVV 95
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.480e-47 Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
IFAEDMTDDMCQFAL+TS+EAF LTI KGQVFT IAS+IR+ FEK +GRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct: 8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH) HSP 1 Score: 115 bits (289), Expect = 2.140e-31 Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
+FAEDM+++ + A++ +++AF LTI G V +TIA FIR+ F++ H RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVL+W+
Sbjct: 44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.510e-31 Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
+FAEDMTD M + + T+++AFQL + G+ F+TIA F+R+ EK +GRGWN +VG SFGAYVTHEIKTY+YF+V GV VLVWR
Sbjct: 13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL) HSP 1 Score: 113 bits (282), Expect = 1.030e-30 Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
+FAEDMTD M L T+++AFQL +T + F+TIA F+R+ EK +GRGWN VVG SFGAYVTHEIKTY+YF+V GV VLVW+
Sbjct: 14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.530e-29 Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVL 264
+FAEDMTD M + AL T+++AFQL +T + F+TIA F+R+ EK +GRGWN VVG SFGAYVTHEIKTY+YF+V GV VLVW+ L
Sbjct: 14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKTYL 101
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM) HSP 1 Score: 108 bits (271), Expect = 4.360e-29 Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 246
+FAEDMTD M + AL T+++AFQL +T + F+TIA F+R+ EK +GRGWN VVG SFGAYVTHEIKTY+YF+V GV VL
Sbjct: 14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.540e-29 Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
+FAEDM+++ F LE + +AF +G+V++ +A+FIR A EK +G+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct: 8 VFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.350e-28 Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
+FAEDM+++ + A + +++AF +TI+ G +TIA FIR+ F+ H GWN +VGRSFGAYVTHEIKTY YF+V PG YVL+WR
Sbjct: 32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12126.1628.1 >prot_H-elongata_contig12126.1628.1 ID=prot_H-elongata_contig12126.1628.1|Name=mRNA_H-elongata_contig12126.1628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVback to top mRNA from alignment at H-elongata_contig12126:3075..3846- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12126.1628.1 ID=mRNA_H-elongata_contig12126.1628.1|Name=mRNA_H-elongata_contig12126.1628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=772bp|location=Sequence derived from alignment at H-elongata_contig12126:3075..3846- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12126:3075..3846- >mRNA_H-elongata_contig12126.1628.1 ID=mRNA_H-elongata_contig12126.1628.1|Name=mRNA_H-elongata_contig12126.1628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig12126:3075..3846- (Himanthalia elongata Himel1 dioecious)back to top |