mRNA_H-elongata_contig12126.1628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12126.1628.1
Unique NamemRNA_H-elongata_contig12126.1628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.710e-50
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVL 264
            IFAEDM+D+MC FALETSQEAFQLTITKGQVFTTIAS IR+AFEK++GRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL+WR VL
Sbjct:    8 IFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVL 95          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 4.160e-50
Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVL 264
            IFAEDM+D+MCQFALETSQEAFQLTITKGQVFTTIAS IR+AFEK++GRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL+WR V+
Sbjct:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVV 95          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.480e-47
Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
            IFAEDMTDDMCQFAL+TS+EAF LTI KGQVFT IAS+IR+ FEK +GRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 2.140e-31
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
            +FAEDM+++  + A++ +++AF LTI  G V +TIA FIR+ F++ H RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVL+W+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.510e-31
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
            +FAEDMTD M +  + T+++AFQL +  G+ F+TIA F+R+  EK +GRGWN +VG SFGAYVTHEIKTY+YF+V  GV VLVWR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 113 bits (282), Expect = 1.030e-30
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
            +FAEDMTD M    L T+++AFQL +T  + F+TIA F+R+  EK +GRGWN VVG SFGAYVTHEIKTY+YF+V  GV VLVW+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.530e-29
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVL 264
            +FAEDMTD M + AL T+++AFQL +T  + F+TIA F+R+  EK +GRGWN VVG SFGAYVTHEIKTY+YF+V  GV VLVW+  L
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKTYL 101          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 108 bits (271), Expect = 4.360e-29
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 246
            +FAEDMTD M + AL T+++AFQL +T  + F+TIA F+R+  EK +GRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.540e-29
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
            +FAEDM+++   F LE + +AF     +G+V++ +A+FIR A EK +G+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:    8 VFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.350e-28
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 IFAEDMTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLVWR 255
            +FAEDM+++  + A + +++AF +TI+ G   +TIA FIR+ F+  H  GWN +VGRSFGAYVTHEIKTY YF+V PG YVL+WR
Sbjct:   32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12126.1628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF01_9PHAE2.710e-5089.77Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7FQ30_ECTSI4.160e-5089.77Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CC04_9STRA1.480e-4783.53Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH2.140e-3160.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485KYL8_9STRA3.510e-3161.18Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL1.030e-3062.35Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A225VFG7_9STRA2.530e-2962.50Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]
H3HCG0_PHYRM4.360e-2963.41Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A7S4E7C9_9STRA7.540e-2957.65Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A7S3H299_9STRA2.350e-2856.47Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12126contigH-elongata_contig12126:3075..3846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.1e-35
Seed eggNOG ortholog2880.D7FQ30
KEGG koko:K10418
KEGG Pathwayko04962,map04962
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Exons2
Model size282
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12126.1628.1prot_H-elongata_contig12126.1628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12126 3075..3831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.478586-CDS-H-elongata_contig12126:3074..32661622929713.478586-CDS-H-elongata_contig12126:3074..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12126 3075..3266 -
1691679128.9021506-CDS-H-elongata_contig12126:3074..32661691679128.9021506-CDS-H-elongata_contig12126:3074..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12126 3075..3266 -
1622929713.4904025-CDS-H-elongata_contig12126:3756..38311622929713.4904025-CDS-H-elongata_contig12126:3756..3831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12126 3757..3831 -
1691679128.9134295-CDS-H-elongata_contig12126:3756..38311691679128.9134295-CDS-H-elongata_contig12126:3756..3831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12126 3757..3831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.5053442-UTR-H-elongata_contig12126:3831..38461622929713.5053442-UTR-H-elongata_contig12126:3831..3846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12126 3832..3846 -
1691679128.9245927-UTR-H-elongata_contig12126:3831..38461691679128.9245927-UTR-H-elongata_contig12126:3831..3846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12126 3832..3846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12126.1628.1

>prot_H-elongata_contig12126.1628.1 ID=prot_H-elongata_contig12126.1628.1|Name=mRNA_H-elongata_contig12126.1628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MTDDMCQFALETSQEAFQLTITKGQVFTTIASFIRQAFEKAHGRGWNVVV
GRSFGAYVTHEIKTYMYFTVVPGVYVLVWRRVLFPTFS*
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mRNA from alignment at H-elongata_contig12126:3075..3846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12126.1628.1 ID=mRNA_H-elongata_contig12126.1628.1|Name=mRNA_H-elongata_contig12126.1628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=772bp|location=Sequence derived from alignment at H-elongata_contig12126:3075..3846- (Himanthalia elongata Himel1 dioecious)
ATATTCGCGGAGGATATGACAGACGACATGTGCCAGTTTGCGCTGGAGAC CAGCCAGGAAGCCTTCCAACTGACGATCACGAAGGGCCAGGTCAGTCGGT CGATTTCAACTTAAACTATCAATGTTCTCTTTTTTTATTTCTTTTCTTTA CAGTAGAGATATCGCTTTTCCCGAGTTTTTATGCACCATTGCCGTTTACG TTGTACAGTACGGTTATCACGTTGTACGTTTTCCTTCCGGATGTATTTTT TCGACATTTTGACCACGGACTGGATTTCGAAATCAGCTTGTGATATAACT ACCTCAACTCCGCGGCATAAAAAATCATAGAACAATTAGGTTAGGAATCC ACGAATGTAAAAAAAAAAAGTAACACTAAGCGTCAACTACAGACTATATA TAGGCATCTCTACTCGCATTAGAAGTATACGTCACACGATGAGCGCCATT ACATTTGTATGTCGATCGCGCGTGGGTGGATGTGGATGTGACGGATCATT TTCCTCCATGACTAATAGTACCTGCCTCGACACTCGACCGCTTCTCTCCG TGGACGCCCCCTTCGTGACTCGACGGGAAGGTGTTCACAACCATTGCTTC ATTCATCCGTCAAGCGTTCGAGAAAGCGCACGGGCGAGGTTGGAACGTTG TGGTGGGGAGAAGCTTCGGGGCCTACGTGACCCATGAGATCAAGACGTAT ATGTACTTTACCGTTGTGCCGGGGGTCTACGTTCTAGTGTGGAGGCGAGT ACTCTTCCCAACGTTCAGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig12126:3075..3846-

>mRNA_H-elongata_contig12126.1628.1 ID=mRNA_H-elongata_contig12126.1628.1|Name=mRNA_H-elongata_contig12126.1628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig12126:3075..3846- (Himanthalia elongata Himel1 dioecious)
ATGACAGACGACATGTGCCAGTTTGCGCTGGAGACCAGCCAGGAAGCCTT
CCAACTGACGATCACGAAGGGCCAGATGACAGACGACATGTGCCAGTTTG
CGCTGGAGACCAGCCAGGAAGCCTTCCAACTGACGATCACGAAGGGCCAG
GTGTTCACAACCATTGCTTCATTCATCCGTCAAGCGTTCGAGAAAGCGCA
CGGGCGAGGTTGGAACGTTGTGGTGGGGAGAAGCTTCGGGGCCTACGTGA
CCCATGAGATCAAGACGTATATGTACTTTACCGTTGTGCCGGGGGTCTAC
GTTCTAGTGTGGAGGCGAGTACTCTTCCCAACGTTCAGCTAGGTGTTCAC
AACCATTGCTTCATTCATCCGTCAAGCGTTCGAGAAAGCGCACGGGCGAG
GTTGGAACGTTGTGGTGGGGAGAAGCTTCGGGGCCTACGTGACCCATGAG
ATCAAGACGTATATGTACTTTACCGTTGTGCCGGGGGTCTACGTTCTAGT
GTGGAGGCGAGTACTCTTCCCAACGTTCAGCTAG
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