mRNA_H-elongata_contig87066.16255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87066.16255.1
Unique NamemRNA_H-elongata_contig87066.16255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: D7G2H9_ECTSI (Arginine biosynthesis bifunctional protein ArgJ, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H9_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.080e-101
Identity = 163/207 (78.74%), Postives = 183/207 (88.41%), Query Frame = 1
Query:    1 ASVKASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNTR 621
            A VKA MQS SL+PA  SIMTTDRYPK+RGT+VG+NGGRLVGIAKGAGMIEP+MATML Y+VTDLQIP +KMR+LLSKK+DASFNCI+I SDTSTS   DTV+LLSSGKVPLA+GDLEDFE+KLEAVC GLAEDVVRNGEGT HVM+  V+GAPTS +AR+LGK VVNSPLFK A  GNDPNVGRLLAVVGR M  ++P T+VSNTR
Sbjct:  220 APVKAKMQSASLYPACKSIMTTDRYPKMRGTEVGSNGGRLVGIAKGAGMIEPDMATMLVYLVTDLQIPREKMRELLSKKSDASFNCISIDSDTSTS---DTVLLLSSGKVPLAEGDLEDFEEKLEAVCDGLAEDVVRNGEGTAHVMQGHVTGAPTSALARKLGKGVVNSPLFKGAGGGNDPNVGRLLAVVGRVMGKKSPDTDVSNTR 423          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A835Z9Q2_9STRA (Arginine biosynthesis bifunctional protein ArgJ, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q2_9STRA)

HSP 1 Score: 259 bits (661), Expect = 3.830e-81
Identity = 139/205 (67.80%), Postives = 159/205 (77.56%), Query Frame = 1
Query:    7 VKASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNTR 621
            V+  +Q +SL PAA SIMTTDRYPKLRG +VGA G  +VGIAKGAGMIEPNMATML YI+TDL +P   ++ LL  K DASFNCI++ SDTSTS   DTVVL+SSGKV   +GDLE F   LE+VC GLA+DVVRNGEGT HVMEV V GAP+   ARR+GK VVNSPLFK A+AGNDPNVGRLLAVVGR M    P  ++S TR
Sbjct:  209 VQGRIQRDSLAPAARSIMTTDRYPKLRGCRVGATGASVVGIAKGAGMIEPNMATMLVYILTDLDVPRSALQSLLRAKVDASFNCISVDSDTSTS---DTVVLVSSGKVAAREGDLEAFGAALESVCKGLAQDVVRNGEGTTHVMEVLVKGAPSDATARRVGKEVVNSPLFKCAVAGNDPNVGRLLAVVGRVMGVLDPAADLSRTR 410          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A7S0LID0_9EUKA (Arginine biosynthesis bifunctional protein ArgJ, mitochondrial n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LID0_9EUKA)

HSP 1 Score: 216 bits (549), Expect = 1.800e-65
Identity = 117/201 (58.21%), Postives = 150/201 (74.63%), Query Frame = 1
Query:   19 MQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPL-ADGDLE---DFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEV 609
            +Q +SL PAA  IMTTDRYPKLR  +  A GGRLVGIAKGAGMIEPNMATML++I+TDL +P  +++ +L+  AD+SFNC+++ +D STS   DT+V +SS   PL A  D E   +FE  L  +C  L+ DV RNGEGT HV+ VRVSG+PT ++AR +GKAVVNSPLFK+A+AGNDPNVGRL+  VG ++   AP  E+
Sbjct:  112 LQRDSLLPAAKGIMTTDRYPKLRSVE--ACGGRLVGIAKGAGMIEPNMATMLSFILTDLDVPRSELQRMLAAAADSSFNCMSVDADQSTS---DTLVCISSATTPLKASRDQEALAEFEGALRQLCEELSGDVARNGEGTSHVIRVRVSGSPTREIARGVGKAVVNSPLFKTAVAGNDPNVGRLVGAVGSYLGRAAPELEL 307          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A7S3T4G0_9SPIT (Arginine biosynthesis bifunctional protein ArgJ, mitochondrial n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T4G0_9SPIT)

HSP 1 Score: 217 bits (553), Expect = 3.760e-65
Identity = 118/212 (55.66%), Postives = 154/212 (72.64%), Query Frame = 1
Query:    4 SVKASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGD--LEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSN-TRRVG 630
            S  A++Q +++ PAA +IMTTDRYPKLR  +V   GG +VGIAKGAGMIEPNMATML +I+TD+ +P  +++ +LS  AD +FNC++I  D STS   DTVV+LSS   PL  GD  L++F   L AVCA LA D+ RNGEGT HVM + V G+PT D+AR +GKAVVNSPL K+AIAGNDPNVGR++  VG ++   +P  ++S  T  +G
Sbjct:  198 SALAALQRDTMLPAARAIMTTDRYPKLRRAEV--CGGTIVGIAKGAGMIEPNMATMLCFILTDIDVPKAELQKMLSSSADETFNCMSIDGDQSTS---DTVVVLSSQMKPLPSGDAALKEFAAGLRAVCADLAADITRNGEGTAHVMRIAVKGSPTFDLARGVGKAVVNSPLVKTAIAGNDPNVGRIVGAVGSYLGKVSPDLDLSKCTMNIG 404          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: UPI0019BA619A (Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=UPI0019BA619A)

HSP 1 Score: 213 bits (542), Expect = 5.590e-65
Identity = 119/203 (58.62%), Postives = 145/203 (71.43%), Query Frame = 1
Query:   13 ASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNTR 621
            A++ + S+ PAA  I+TTD YPK+R   VGA  GR+VGIAKGAGMIEPNMATML YI+TDL +P   +R LL+K  +ASFN I+I SDTSTS   DTV L+SSG VP    DL  FE  L  VC  LAEDVVRNGEG  HV+ V V+ A T  +A  LGKA+VN+PLFK A+AGNDPNVGRL+  +G+ +   AP T++S  R
Sbjct:   62 AALAAGSIMPAAEGIVTTDLYPKVRSAAVGA--GRIVGIAKGAGMIEPNMATMLVYILTDLAVPRDTLRALLTKTVNASFNRISIDSDTSTS---DTVALVSSGLVPC--DDLAAFESALALVCRDLAEDVVRNGEGVRHVIRVEVTNAATPSLAVALGKAIVNAPLFKCAVAGNDPNVGRLVQAIGKHVGAHAPETDLSKLR 257          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A2A2RID4_9BACT (Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Opitutae bacterium Tous-C8FEB TaxID=1982323 RepID=A0A2A2RID4_9BACT)

HSP 1 Score: 216 bits (549), Expect = 5.610e-65
Identity = 118/199 (59.30%), Postives = 145/199 (72.86%), Query Frame = 1
Query:   31 SLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNTRRV 627
            S+ PAA  I+TTD YPK+R  +VG  GG +VGIAKGAGMIEPN+ATML YI+TD+ +P  ++R +L++ ADASFN I+I SDTSTS   DTVV LSSG+VP AD     FE+ L  VC  LAEDVVRNGEG  HV+ V V  A +  +AR LGKAVVN PLFK A+AGNDPNVGRL+  +G+ +   AP T++S  R V
Sbjct:  159 SILPAAEGIVTTDLYPKVRRAEVG--GGSIVGIAKGAGMIEPNLATMLVYILTDIAVPRAELRQMLARAADASFNAISIDSDTSTS---DTVVALSSGRVPFADWGA--FERALHQVCRDLAEDVVRNGEGVRHVIRVTVREAASLGLARALGKAVVNGPLFKCAVAGNDPNVGRLIQAIGKHVGAHAPGTDLSRLRAV 350          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A178IAJ7_9BACT (Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Opitutaceae bacterium TSB47 TaxID=1184151 RepID=A0A178IAJ7_9BACT)

HSP 1 Score: 216 bits (549), Expect = 6.050e-65
Identity = 117/203 (57.64%), Postives = 144/203 (70.94%), Query Frame = 1
Query:   13 ASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNTR 621
            A++ + S+ PAA  I+TTD YPK+R   VG  G  +VGIAKGAGMIEPN+ATML Y++TDL +P   +R +L++  D SFN I+I SDTSTS   DTVVLLSSGK+P A  D   FE  L  VC  LAEDVVRNGEG  HV+ VRV+GAP    AR LGKAVVN+PLFK A+AGNDPNVGRL+  +G+ +   AP  ++   R
Sbjct:  153 AALSAGSVLPAAEGIVTTDLYPKIRRAAVGRTGASIVGIAKGAGMIEPNLATMLVYVLTDLAVPRDTLRAMLARVVDDSFNTISIDSDTSTS---DTVVLLSSGKIPAA-ADHAAFETALAQVCRDLAEDVVRNGEGVRHVIRVRVAGAPDRATARALGKAVVNAPLFKCAVAGNDPNVGRLVQAIGKHVGAHAPGLDLGRLR 351          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A2U8E6L4_9BACT (Arginine biosynthesis bifunctional protein ArgJ n=2 Tax=Ereboglobus luteus TaxID=1796921 RepID=A0A2U8E6L4_9BACT)

HSP 1 Score: 214 bits (545), Expect = 2.330e-64
Identity = 117/200 (58.50%), Postives = 141/200 (70.50%), Query Frame = 1
Query:   13 ASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVS 612
            A++  +S+ PAA  I+TTD YPK+R   VGA  G +VGIAKGAGMIEPNMATML YI+TDL +P   +R +L++  D+SFN I+I SDTSTS   DTV L+SSGKVP   G    FE  L  VC  LAEDVVRNGEG  HVM V V GA   + AR LGKA+VN+PLFK A+AGNDPNVGRL+  VG+ +    P  +VS
Sbjct:  153 AALSGDSILPAAEGIVTTDLYPKIRRASVGA--GSIVGIAKGAGMIEPNMATMLVYILTDLAVPRDTLRAMLARAVDSSFNTISIDSDTSTS---DTVALVSSGKVPCEPGQYAAFEAALAQVCRDLAEDVVRNGEGVRHVMRVIVKGASDLETARALGKAIVNAPLFKCAVAGNDPNVGRLVQAVGKHVGAHMPSLDVS 347          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A290Q6Z9_9BACT (Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Nibricoccus aquaticus TaxID=2576891 RepID=A0A290Q6Z9_9BACT)

HSP 1 Score: 213 bits (542), Expect = 6.240e-64
Identity = 116/207 (56.04%), Postives = 150/207 (72.46%), Query Frame = 1
Query:   13 ASMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSN-TRRVG 630
            AS+ + S+ PAA  I+TTD YPK+R   +G  GG +VGIAKGAGMIEPN+ATML YI+TD+ IP  ++R +L++  D SFN I+I SDTSTS   DTV L+SS KVP +  D   FEK L  VC  LAEDVVRNGEG  HV+ V V GAP+ +++R LGKA+VN+PLFK A+AGNDPNVGRL+  +G+ +   AP  ++S  + R+G
Sbjct:  153 ASLTASSILPAAEGIVTTDLYPKIRRADLG--GGSIVGIAKGAGMIEPNLATMLVYILTDIAIPRAELRTMLARAVDVSFNTISIDSDTSTS---DTVALVSSSKVPCS--DKAAFEKALTQVCRDLAEDVVRNGEGVRHVIRVNVKGAPSREISRALGKAIVNAPLFKCAVAGNDPNVGRLVQAIGKHVGAHAPGLDLSRLSARIG 352          
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Match: A0A2D4BSP9_PYTIN (Glutamate N-acetyltransferase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSP9_PYTIN)

HSP 1 Score: 208 bits (529), Expect = 1.100e-63
Identity = 111/205 (54.15%), Postives = 145/205 (70.73%), Query Frame = 1
Query:   16 SMQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMATMLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLSSGKVPLADGD-LEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTSDMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNTRRV 627
            S+QSES+ P A  IMTTD YPK+R   V   GGR+VG+AKGAGMIEPNMATMLAY++TDL +P + +R LL +  D +FN ++I +D STS   DTV ++SSG++P  +   LE F + L  VC GL ED+VRNGEG  HVM V V GA +  MA+ +GK+VVNSPL K A+AGNDPNVGRL+  VG++M    P  +++   R+
Sbjct:    8 SLQSESVLPVAEGIMTTDLYPKVRSADVA--GGRIVGVAKGAGMIEPNMATMLAYVLTDLAVPRETLRRLLREVVDDTFNAMSIDTDQSTS---DTVAIVSSGELPFDEAAALEPFRRALHEVCRGLCEDIVRNGEGAQHVMRVVVRGAASRAMAQGVGKSVVNSPLLKCAVAGNDPNVGRLVMAVGKYMGRHHPTLDITRRMRI 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87066.16255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2H9_ECTSI1.080e-10178.74Arginine biosynthesis bifunctional protein ArgJ, m... [more]
A0A835Z9Q2_9STRA3.830e-8167.80Arginine biosynthesis bifunctional protein ArgJ, m... [more]
A0A7S0LID0_9EUKA1.800e-6558.21Arginine biosynthesis bifunctional protein ArgJ, m... [more]
A0A7S3T4G0_9SPIT3.760e-6555.66Arginine biosynthesis bifunctional protein ArgJ, m... [more]
UPI0019BA619A5.590e-6558.62Bifunctional ornithine acetyltransferase/N-acetylg... [more]
A0A2A2RID4_9BACT5.610e-6559.30Arginine biosynthesis bifunctional protein ArgJ n=... [more]
A0A178IAJ7_9BACT6.050e-6557.64Arginine biosynthesis bifunctional protein ArgJ n=... [more]
A0A2U8E6L4_9BACT2.330e-6458.50Arginine biosynthesis bifunctional protein ArgJ n=... [more]
A0A290Q6Z9_9BACT6.240e-6456.04Arginine biosynthesis bifunctional protein ArgJ n=... [more]
A0A2D4BSP9_PYTIN1.100e-6354.15Glutamate N-acetyltransferase (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87066contigH-elongata_contig87066:251..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.1
Seed ortholog evalue7.9e-82
Seed eggNOG ortholog2880.D7G2H9
Preferred nameECM42
KEGG rclassRC00004,RC00064
KEGG koko:K00620
KEGG ReactionR00259,R02282
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
GOsGO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006536,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.glutamate N-acetyltransferase activity
EggNOG OGsCOG1364@1,KOG2786@2759
EC2.3.1.1,2.3.1.35
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size633
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87066.16255.1prot_H-elongata_contig87066.16255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87066 251..2663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.5028384-CDS-H-elongata_contig87066:250..4421622931271.5028384-CDS-H-elongata_contig87066:250..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 251..442 -
1691679767.9389377-CDS-H-elongata_contig87066:250..4421691679767.9389377-CDS-H-elongata_contig87066:250..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 251..442 -
1622931271.523638-CDS-H-elongata_contig87066:782..9261622931271.523638-CDS-H-elongata_contig87066:782..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 783..926 -
1691679767.951406-CDS-H-elongata_contig87066:782..9261691679767.951406-CDS-H-elongata_contig87066:782..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 783..926 -
1622931271.5396023-CDS-H-elongata_contig87066:1872..19711622931271.5396023-CDS-H-elongata_contig87066:1872..1971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 1873..1971 -
1691679767.960952-CDS-H-elongata_contig87066:1872..19711691679767.960952-CDS-H-elongata_contig87066:1872..1971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 1873..1971 -
1622931271.5580184-CDS-H-elongata_contig87066:2215..23171622931271.5580184-CDS-H-elongata_contig87066:2215..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 2216..2317 -
1691679767.970727-CDS-H-elongata_contig87066:2215..23171691679767.970727-CDS-H-elongata_contig87066:2215..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 2216..2317 -
1622931271.5771723-CDS-H-elongata_contig87066:2585..26631622931271.5771723-CDS-H-elongata_contig87066:2585..2663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 2586..2663 -
1691679767.9871202-CDS-H-elongata_contig87066:2585..26631691679767.9871202-CDS-H-elongata_contig87066:2585..2663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87066 2586..2663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.602357-UTR-H-elongata_contig87066:2663..26811622931271.602357-UTR-H-elongata_contig87066:2663..2681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87066 2664..2681 -
1691679768.0006201-UTR-H-elongata_contig87066:2663..26811691679768.0006201-UTR-H-elongata_contig87066:2663..2681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87066 2664..2681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87066.16255.1

>prot_H-elongata_contig87066.16255.1 ID=prot_H-elongata_contig87066.16255.1|Name=mRNA_H-elongata_contig87066.16255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MQSESLFPAAVSIMTTDRYPKLRGTQVGANGGRLVGIAKGAGMIEPNMAT
MLAYIVTDLQIPPQKMRDLLSKKADASFNCITIHSDTSTSPSRDTVVLLS
SGKVPLADGDLEDFEKKLEAVCAGLAEDVVRNGEGTGHVMEVRVSGAPTS
DMARRLGKAVVNSPLFKSAIAGNDPNVGRLLAVVGRFMATEAPRTEVSNT
RRVG*
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mRNA from alignment at H-elongata_contig87066:251..2681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87066.16255.1 ID=mRNA_H-elongata_contig87066.16255.1|Name=mRNA_H-elongata_contig87066.16255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig87066:251..2681- (Himanthalia elongata Himel1 dioecious)
GCTTCCGTGAAGGCTTCGATGCAATCGGAGTCGCTCTTCCCCGCTGCCGT ATCTATTATGACTACGGACCGGTATCCAAAGCTGAGGGGCACCCAGGTAG GTTAGATGTTACGGCCTTCTCTTTAGGATCGTTGGGTTATGACGCCAGTC AGCCAATCAGTCCGTCCGTCCGTCTGACCGTCAGTTCAATAGTATACCGT TTCACTGTGTGGTCTGATGGGGGTGATTGTTGGAGGGGTGGGGGGCGGCG CTCCGTGTGGCCTCTGTATTTCACTGTGTGTCAAATGTCAAATGTTTGGG TGCGTGTTTTACGTTGTCTCTTCAGCTGGCGTTTTGCGTTTTGGTCGTCT TTGTTTTTCTACAGGTTGGGGCGAACGGAGGCAGGCTCGTGGGGATCGCC AAGGGAGCCGGGATGATCGAGCCAAACATGGCGACCATGCTAGCTTACAT CGTGACCGATTTGCAGGTGCTTGCCTCGCATCGTCCATGTCGCCATCACA ACAAAAATATAAATTGATGAACCATCTTCCCCCCCCCCGCGTTGACGAAA AACATCGCTATTTCTTTTTTCTTTGGCGTGTCTCGCGGCTGATGCAGCAG TCACGGTTTGTCTTGTTGCCCGATGCACCACACGACGAAGTGCCGAAGTA TTGCCTGCTCCCGGAATGCCTGCCGCCGCGGCGCGCGTACTCGACGAATC CTCGGTGTAGATCCCCCCCCAGAAGATGAGAGACTTGCTGTCCAAGAAGG CCGACGCCAGCTTCAACTGCATCACCATCCACAGCGACACCTCCACATCG CCAAGTCGAGTGTTTAATATATATATATATATATATATTTTTTACAGCAA AAGTTTCACGTCGGCAAGTCAAGTCAAGTCAAGTCAAGTCAAGTCAAGCC AAGCCAAGCCAAGCCAAGCCAAGCCAAGCCGTCGTTTCTCTTGTTTTCCT TCCTTGTTTGTGTTTGTTTTTCGTTCCTCTTCGACGCGCCATAAAAAAGA AACACGAGGCTTTTATGTTTATTTTTCTTCAGAGTACCCAAGAGTGCGAG CCCACTTCAGGGGGGAGTTATTGGACCCATTTATGCTGGCGCATGGTGTC GTTGGAACTTTTCCATCTCGTGATCTCGTGATCTCGTGAGGAAGGAAAAG GGGGGTTAAGCGACAAGCATATTATGTGTGTGTGTGTGTATTTATTAAAT TGCACATAACCGCTAAGGCAATCCGGCCCTGTCGTCCTAGTCATTCTATG CCACTCGTATTGATCCTCCTAGGGGGGATCAATTATACTTATTCCGAAAA CCTCGGTTTGTGTGTGTGTATGTGTGTATTTATTAAATTGCACCTAACCG CTAAGGCAATCCGGCTATGTGATGATAGTCATAGTTATTCTATTCTATCC TATTAATCCCATTAACACTGCCTGTAATCCACGTGTCAGGTGGGGGGGGT GTTAATGTGTATTTATATATTAAACTGCACATAACCGCCCAACTAACAAT CCGGCCCTCCCTGTCATGCTAGCTCTTAGGCTACTCTCGCATTGATTCTC CCAATGGGGGATTCAATAATAATTCCTACAAAAACCTCTGATCAGACGTG AGAAAAGAGGCATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTT GTTTTTGGAGGATGGAGCGGGGACCAACATATTATATCGATTTTGATTAA CATCTTGCACATGGAATGCATTGTGTTCTCCCTCTCTCTGAAATCTGCGG CACAGGACACGGTAGTTCTGCTATCCTCAGGCAAGGTGCCCCTGGCTGAC GGCGACCTGGAGGATTTCGAGAAGAAGCTCGAGGCGGTCTGCGCAGGGCT GGCGGAAGATGTCGTCAGAAACGGAGAAGGAACAGGTCACGTCATGGAGG TACAGCTCGAGTCACTCATGGCTCGTATGGGTTGGAAAAATAATCCCTCG AGTTTCTTCGCGCTGGTCATGTCGCGGGTTCTCGAGAAAAGGCAAAATCT TCCATGTACAGTACAGATCTTTGCGCTTAATAATGTGTTCACCAGCAGTA CAGCCACACAAGGCGCGTTTTTCTTGCACGCTGGATCTGCAGAAGAGAGA GAAATAGTCACTCCCTCCTATCCCCCCTATCCCTGTCACTCCCCCAAGAC TGTGCGAAGTACGAGGCGTCCACTCTACATGCCCTCCAGAGTAACGAGCG CTATGGGCGGCTTATGCTTGTTTTTGTTTTTCAACTCAGGTGCGCGTTTC GGGGGCGCCCACGTCGGACATGGCGCGCCGGCTAGGTAAAGCGGTGGTAA ACTCACCACTTTTCAAGTCGGCGATCGCAGGGAACGACCCGAACGTCGGG CGGCTGCTCGCTGTGGTGGGGAGGTTCATGGCGACAGAGGCGCCCCGCAC CGAGGTCTCCAACACCAGGCGAGTAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig87066:251..2681-

>mRNA_H-elongata_contig87066.16255.1 ID=mRNA_H-elongata_contig87066.16255.1|Name=mRNA_H-elongata_contig87066.16255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig87066:251..2681- (Himanthalia elongata Himel1 dioecious)
ATGCAATCGGAGTCGCTCTTCCCCGCTGCCGTATCTATTATGACTACGGA
CCGGTATCCAAAGCTGAGGGGCACCCAGATGCAATCGGAGTCGCTCTTCC
CCGCTGCCGTATCTATTATGACTACGGACCGGTATCCAAAGCTGAGGGGC
ACCCAGGTTGGGGCGAACGGAGGCAGGCTCGTGGGGATCGCCAAGGGAGC
CGGGATGATCGAGCCAAACATGGCGACCATGCTAGCTTACATCGTGACCG
ATTTGCAGGTTGGGGCGAACGGAGGCAGGCTCGTGGGGATCGCCAAGGGA
GCCGGGATGATCGAGCCAAACATGGCGACCATGCTAGCTTACATCGTGAC
CGATTTGCAGATCCCCCCCCAGAAGATGAGAGACTTGCTGTCCAAGAAGG
CCGACGCCAGCTTCAACTGCATCACCATCCACAGCGACACCTCCACATCG
CCAAGTCGAATCCCCCCCCAGAAGATGAGAGACTTGCTGTCCAAGAAGGC
CGACGCCAGCTTCAACTGCATCACCATCCACAGCGACACCTCCACATCGC
CAAGTCGAGACACGGTAGTTCTGCTATCCTCAGGCAAGGTGCCCCTGGCT
GACGGCGACCTGGAGGATTTCGAGAAGAAGCTCGAGGCGGTCTGCGCAGG
GCTGGCGGAAGATGTCGTCAGAAACGGAGAAGGAACAGGTCACGTCATGG
AGGACACGGTAGTTCTGCTATCCTCAGGCAAGGTGCCCCTGGCTGACGGC
GACCTGGAGGATTTCGAGAAGAAGCTCGAGGCGGTCTGCGCAGGGCTGGC
GGAAGATGTCGTCAGAAACGGAGAAGGAACAGGTCACGTCATGGAGGTGC
GCGTTTCGGGGGCGCCCACGTCGGACATGGCGCGCCGGCTAGGTAAAGCG
GTGGTAAACTCACCACTTTTCAAGTCGGCGATCGCAGGGAACGACCCGAA
CGTCGGGCGGCTGCTCGCTGTGGTGGGGAGGTTCATGGCGACAGAGGCGC
CCCGCACCGAGGTCTCCAACACCAGGCGAGTAGGGTGAGTGCGCGTTTCG
GGGGCGCCCACGTCGGACATGGCGCGCCGGCTAGGTAAAGCGGTGGTAAA
CTCACCACTTTTCAAGTCGGCGATCGCAGGGAACGACCCGAACGTCGGGC
GGCTGCTCGCTGTGGTGGGGAGGTTCATGGCGACAGAGGCGCCCCGCACC
GAGGTCTCCAACACCAGGCGAGTAGGGTGA
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