mRNA_H-elongata_contig86783.16237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86783.16237.1
Unique NamemRNA_H-elongata_contig86783.16237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.010e-65
Identity = 118/130 (90.77%), Postives = 122/130 (93.85%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVVPA----PSANAPAAGAAGSASE 393
            +SAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLS+EELTRAVDDGAVWTSAAIFAETATQTPNRI FDEFAAWYTEGGFRVSPWLELLDMGKWVVP+    P+A APAAGA G ASE
Sbjct: 1100 KSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDMGKWVVPSNALPPAAAAPAAGAVGGASE 1229          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.970e-60
Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVVP 342
            +SAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLS+EELTRAVDDGAVWTSAAIFAETATQTPNRI FDEFAAWYTEGGFRVSPWLELLD+GKWV P
Sbjct: 1112 KSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDIGKWVAP 1220          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A7S3XMH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH2_HETAK)

HSP 1 Score: 132 bits (331), Expect = 4.860e-36
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWV 336
            +S KLA+AF L DEDGD RL+RRGLWR+ R+FL+ LM++S  +SS+ + EL   +D+GAVWT+A IF +      N+I F+E AAWYTEGG+R+SPWLELLD+ KW+
Sbjct:  104 KSGKLAYAFDLLDEDGDGRLSRRGLWRFLRAFLSVLMSMSSKASSMEASELVDLIDNGAVWTAATIFEQCDLAEKNKIDFEELAAWYTEGGYRLSPWLELLDLKKWL 210          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A6U1MRH8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRH8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.280e-35
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVV 339
            +S KL++AF L DED D++L+RRGLWRY RSFLT LM  S A+S LS EEL  A+D GAV  +A I+ ET  +  N+I+F+E AAWYT GG+  +PWLELLD+ KW+V
Sbjct:  137 KSTKLSYAFDLLDEDEDQKLSRRGLWRYLRSFLTVLMGASLANSGLSGEELVWAIDSGAVHAAAVIYQETEREEKNKISFEELAAWYTNGGYWFAPWLELLDLKKWLV 244          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A836CCD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.630e-30
Identity = 67/114 (58.77%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAET-ATQTPNRIAFDEFAAWYTEG-------GFRVSPWLELLDMGKW 333
            +S+KL +A+ L   D D  LTRRGLWRY RSFLT LMALS AS +L+++ELTRAVDD AVW SA +FA+  A     RI F + A WYTEG       GF  SPWLELLDM KW
Sbjct:  157 KSSKLVYAWDLL-ADADGALTRRGLWRYMRSFLTVLMALSSASGTLTAKELTRAVDDSAVWVSARVFADLRAADAATRITFTDLADWYTEGLERSAAPGFMTSPWLELLDMSKW 269          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A7S3Y3W7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W7_HETAK)

HSP 1 Score: 107 bits (266), Expect = 5.610e-26
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIF----------AETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKW 333
            +S KLA+AF L DE     LTRRG+WR+ RS L+ L AL  +   + +EEL   VDDGAVWT+A  F          A    + PNR++FD+ AAWYT GG++V PWLELLD+ KW
Sbjct:   55 KSVKLAYAFELLDEQSLGYLTRRGVWRFFRSILSMLAALCSSLLDVPTEELQARVDDGAVWTTARAFSYRGPPAAAAAPERERDPNRLSFDDLAAWYTGGGYQVCPWLELLDLRKW 170          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A7S0GD91_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD91_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.090e-25
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFA--------ETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVV 339
            +S KL FAF L D+D D RL+RRGLW+Y RSFLT LM++S AS++++   +  A+D  + W +A +F              +   + FD+FA WYT+GG+   PWLELLD+ KWV+
Sbjct:  130 KSDKLEFAFDLIDDDKDGRLSRRGLWKYLRSFLTVLMSISSASANMTEGHIYSAIDSASTWATAQVFGAEQDKGLGNNDNSSKRSVCFDDFAEWYTQGGYGSIPWLELLDLKKWVL 245          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A6U4G7P4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G7P4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.000e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSS-LSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWV 336
            +S KLAFAF + D  G   L+RR LWR+ R+FLTAL A SF S +     E   AVD  A+WT+  +F +      NR  F++ A WY EGG+  +PWLELLD+ KWV
Sbjct:  169 KSTKLAFAFDVLDTKGKGALSRRSLWRFFRAFLTALCAFSFESGADRDPHETGVAVDAAAIWTATKVFEKKEVDRANRATFNDIAQWYGEGGYTKAPWLELLDLRKWV 276          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A1V9ZSX4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSX4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.630e-19
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTP----NRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVV 339
            +SAKLAF FGL DED D  LTRR +W+Y RSFLT L+AL   +  LS++ +    D   +  + +IF E+A+        ++ F EFA WY+E G+ + PW+ELLD  KW V
Sbjct:  620 KSAKLAFCFGLFDEDADGYLTRREMWKYLRSFLTMLLALGNGAD-LSADTIGYICDAACISIAKSIFNESASGLDVVMKTKVCFAEFADWYSEKGYALIPWIELLDARKWPV 730          
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A812UYR4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UYR4_SYMMI)

HSP 1 Score: 90.5 bits (223), Expect = 1.290e-18
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAE-TATQTPNRIA--FDEFAAWYTEGGFRVSPWLELLDMGKW 333
            +S+KLA AF L DE+    L+R  LW++ RSFL  L+ LS A+  LSS+E+TR  D  A++   ++    T T+  ++ A  FD+ A WYT  G+R++PWLELLDM KW
Sbjct:  380 KSSKLASAFELLDENKSGLLSRWRLWKFFRSFLCTLLTLSGAAQELSSDEITRVADGTALFACDSVLTSPTTTEKEDQYAATFDDIADWYTSAGYRIAPWLELLDMTKW 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUX5_ECTSI1.010e-6590.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYX4_9PHAE1.970e-6095.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XMH2_HETAK4.860e-3657.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1MRH8_9STRA8.280e-3558.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CCD1_9STRA3.630e-3058.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y3W7_HETAK5.610e-2650.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0GD91_9STRA1.090e-2544.83Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A6U4G7P4_9STRA1.000e-2248.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZSX4_9STRA8.630e-1945.54Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A812UYR4_SYMMI1.290e-1845.87Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86783contigH-elongata_contig86783:1406..2442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.6
Seed ortholog evalue8.7e-58
Seed eggNOG ortholog2880.D7FUX5
EggNOG OGs2CU92@1,2RK0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_008550.1
Exons2
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.2368023-CDS-H-elongata_contig86783:1405..15291622931269.2368023-CDS-H-elongata_contig86783:1405..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86783 1406..1529 -
1691679767.1312-CDS-H-elongata_contig86783:1405..15291691679767.1312-CDS-H-elongata_contig86783:1405..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86783 1406..1529 -
1622931269.2520866-CDS-H-elongata_contig86783:2170..24421622931269.2520866-CDS-H-elongata_contig86783:2170..2442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86783 2171..2442 -
1691679767.1403384-CDS-H-elongata_contig86783:2170..24421691679767.1403384-CDS-H-elongata_contig86783:2170..2442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86783 2171..2442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86783.16237.1prot_H-elongata_contig86783.16237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86783 1406..2442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86783.16237.1

>prot_H-elongata_contig86783.16237.1 ID=prot_H-elongata_contig86783.16237.1|Name=mRNA_H-elongata_contig86783.16237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MLNVFQSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSS
LSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVS
PWLELLDMGKWVVPAPSANAPAAGAAGSASE*
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mRNA from alignment at H-elongata_contig86783:1406..2442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86783.16237.1 ID=mRNA_H-elongata_contig86783.16237.1|Name=mRNA_H-elongata_contig86783.16237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1037bp|location=Sequence derived from alignment at H-elongata_contig86783:1406..2442- (Himanthalia elongata Himel1 dioecious)
ATGCTAAACGTCTTTCAGTCGGCCAAGCTCGCCTTCGCTTTCGGCCTCCA TGATGAGGACGGCGACGAGCGTCTGACGAGGCGAGGCCTTTGGAGATACA CTCGCTCGTTCCTGACTGCTCTCATGGCCCTCAGCTTTGCCAGCTCCAGC CTGTCCTCCGAGGAGCTCACGCGGGCGGTCGACGACGGGGCAGTGTGGAC AAGCGCGGCGATATTCGCGGAGACGGCCACACAGACGCCCAACCGCATCG CCTTCGACGAATTCGCTGCCTGGTGCGTGGGCTAGAGAAAGCACCGAAAG CTTACGTACAGAAAGCAGCGAGACAGGCGGAGATCAAAATGAAAGGAGGG GGGGGGGGGGGTGGGGGGGGCATATTAATTTTCACTTTTTTAGAGGGGCT TGCTTTGCTAAATGGNNNNNNNNNNGAAAGAGAGGCGGGGAGCGAGGGGG TAAAAAAAAGAGGGGGGGGGGGGGGGGGGGGGTGGGGGGGAGGCATATTA ATTTTCACTTTTTTAGAGGAGCTTGCTTGTCTAAATGGTCAGTGTGTGTG TCTCTATTTGTGAATTTGCCGTTTATATGTATGTTACATGTTTATGTGTG TGTGTATTTACTAAATTTCACATGACCGCGCAATCCGGCCCTGTCATGCT AGTCATAGTCATTCTCTCCTCTCCCATTGGTCCTTTCAATGAGGGATCAG GTGTGTGTGTGTGTCTATGTGTGTCTATGTGTGTGTATTTATTAAATTGC ATATAACCGCGCAATGTGTGTCTTGCGTGTTTTGTGTGTCAGTTCTGTGT GATGTTGGTTTAGCTTAGCGCCTCTTTCAGCAGCCCCCCCGTGCCCTCTT CGGATGCCCGCTTTCGAAGCCACCCTCTACTTGCGACTGACCGATCGACG CAAAAAATATCAGGTACACGGAGGGAGGCTTCCGAGTGAGCCCCTGGCTG GAACTGCTCGATATGGGCAAGTGGGTGGTTCCGGCCCCCAGTGCCAATGC TCCAGCAGCCGGCGCAGCGGGCTCCGCAAGCGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig86783:1406..2442-

>mRNA_H-elongata_contig86783.16237.1 ID=mRNA_H-elongata_contig86783.16237.1|Name=mRNA_H-elongata_contig86783.16237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig86783:1406..2442- (Himanthalia elongata Himel1 dioecious)
ATGCTAAACGTCTTTCAGTCGGCCAAGCTCGCCTTCGCTTTCGGCCTCCA
TGATGAGGACGGCGACGAGCGTCTGACGAGGCGAGGCCTTTGGAGATACA
CTCGCTCGTTCCTGACTGCTCTCATGGCCCTCAGCTTTGCCAGCTCCAGC
CTGTCCTCCGAGGAGCTCACGCGGGCGGTCGACGACGGGGCAGTGTGGAC
AAGCGCGGCGATATTCGCGGAGACGGCCACACAGACGCCCAACCGCATCG
CCTTCGACGAATTCGCTGCCTGATGCTAAACGTCTTTCAGTCGGCCAAGC
TCGCCTTCGCTTTCGGCCTCCATGATGAGGACGGCGACGAGCGTCTGACG
AGGCGAGGCCTTTGGAGATACACTCGCTCGTTCCTGACTGCTCTCATGGC
CCTCAGCTTTGCCAGCTCCAGCCTGTCCTCCGAGGAGCTCACGCGGGCGG
TCGACGACGGGGCAGTGTGGACAAGCGCGGCGATATTCGCGGAGACGGCC
ACACAGACGCCCAACCGCATCGCCTTCGACGAATTCGCTGCCTGGTACAC
GGAGGGAGGCTTCCGAGTGAGCCCCTGGCTGGAACTGCTCGATATGGGCA
AGTGGGTGGTTCCGGCCCCCAGTGCCAATGCTCCAGCAGCCGGCGCAGCG
GGCTCCGCAAGCGAGTGAGTACACGGAGGGAGGCTTCCGAGTGAGCCCCT
GGCTGGAACTGCTCGATATGGGCAAGTGGGTGGTTCCGGCCCCCAGTGCC
AATGCTCCAGCAGCCGGCGCAGCGGGCTCCGCAAGCGAGTGA
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