mRNA_H-elongata_contig86783.16237.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI) HSP 1 Score: 225 bits (573), Expect = 1.010e-65 Identity = 118/130 (90.77%), Postives = 122/130 (93.85%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVVPA----PSANAPAAGAAGSASE 393
+SAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLS+EELTRAVDDGAVWTSAAIFAETATQTPNRI FDEFAAWYTEGGFRVSPWLELLDMGKWVVP+ P+A APAAGA G ASE
Sbjct: 1100 KSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDMGKWVVPSNALPPAAAAPAAGAVGGASE 1229
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.970e-60 Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVVP 342
+SAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLS+EELTRAVDDGAVWTSAAIFAETATQTPNRI FDEFAAWYTEGGFRVSPWLELLD+GKWV P
Sbjct: 1112 KSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSAEELTRAVDDGAVWTSAAIFAETATQTPNRIGFDEFAAWYTEGGFRVSPWLELLDIGKWVAP 1220
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A7S3XMH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMH2_HETAK) HSP 1 Score: 132 bits (331), Expect = 4.860e-36 Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWV 336
+S KLA+AF L DEDGD RL+RRGLWR+ R+FL+ LM++S +SS+ + EL +D+GAVWT+A IF + N+I F+E AAWYTEGG+R+SPWLELLD+ KW+
Sbjct: 104 KSGKLAYAFDLLDEDGDGRLSRRGLWRFLRAFLSVLMSMSSKASSMEASELVDLIDNGAVWTAATIFEQCDLAEKNKIDFEELAAWYTEGGYRLSPWLELLDLKKWL 210
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A6U1MRH8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRH8_9STRA) HSP 1 Score: 129 bits (325), Expect = 8.280e-35 Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVV 339
+S KL++AF L DED D++L+RRGLWRY RSFLT LM S A+S LS EEL A+D GAV +A I+ ET + N+I+F+E AAWYT GG+ +PWLELLD+ KW+V
Sbjct: 137 KSTKLSYAFDLLDEDEDQKLSRRGLWRYLRSFLTVLMGASLANSGLSGEELVWAIDSGAVHAAAVIYQETEREEKNKISFEELAAWYTNGGYWFAPWLELLDLKKWLV 244
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A836CCD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD1_9STRA) HSP 1 Score: 118 bits (296), Expect = 3.630e-30 Identity = 67/114 (58.77%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAET-ATQTPNRIAFDEFAAWYTEG-------GFRVSPWLELLDMGKW 333
+S+KL +A+ L D D LTRRGLWRY RSFLT LMALS AS +L+++ELTRAVDD AVW SA +FA+ A RI F + A WYTEG GF SPWLELLDM KW
Sbjct: 157 KSSKLVYAWDLL-ADADGALTRRGLWRYMRSFLTVLMALSSASGTLTAKELTRAVDDSAVWVSARVFADLRAADAATRITFTDLADWYTEGLERSAAPGFMTSPWLELLDMSKW 269
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A7S3Y3W7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W7_HETAK) HSP 1 Score: 107 bits (266), Expect = 5.610e-26 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIF----------AETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKW 333
+S KLA+AF L DE LTRRG+WR+ RS L+ L AL + + +EEL VDDGAVWT+A F A + PNR++FD+ AAWYT GG++V PWLELLD+ KW
Sbjct: 55 KSVKLAYAFELLDEQSLGYLTRRGVWRFFRSILSMLAALCSSLLDVPTEELQARVDDGAVWTTARAFSYRGPPAAAAAPERERDPNRLSFDDLAAWYTGGGYQVCPWLELLDLRKW 170
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A7S0GD91_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD91_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.090e-25 Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFA--------ETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVV 339
+S KL FAF L D+D D RL+RRGLW+Y RSFLT LM++S AS++++ + A+D + W +A +F + + FD+FA WYT+GG+ PWLELLD+ KWV+
Sbjct: 130 KSDKLEFAFDLIDDDKDGRLSRRGLWKYLRSFLTVLMSISSASANMTEGHIYSAIDSASTWATAQVFGAEQDKGLGNNDNSSKRSVCFDDFAEWYTQGGYGSIPWLELLDLKKWVL 245
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A6U4G7P4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G7P4_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.000e-22 Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSS-LSSEELTRAVDDGAVWTSAAIFAETATQTPNRIAFDEFAAWYTEGGFRVSPWLELLDMGKWV 336
+S KLAFAF + D G L+RR LWR+ R+FLTAL A SF S + E AVD A+WT+ +F + NR F++ A WY EGG+ +PWLELLD+ KWV
Sbjct: 169 KSTKLAFAFDVLDTKGKGALSRRSLWRFFRAFLTALCAFSFESGADRDPHETGVAVDAAAIWTATKVFEKKEVDRANRATFNDIAQWYGEGGYTKAPWLELLDLRKWV 276
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A1V9ZSX4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSX4_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 8.630e-19 Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAETATQTP----NRIAFDEFAAWYTEGGFRVSPWLELLDMGKWVV 339
+SAKLAF FGL DED D LTRR +W+Y RSFLT L+AL + LS++ + D + + +IF E+A+ ++ F EFA WY+E G+ + PW+ELLD KW V
Sbjct: 620 KSAKLAFCFGLFDEDADGYLTRREMWKYLRSFLTMLLALGNGAD-LSADTIGYICDAACISIAKSIFNESASGLDVVMKTKVCFAEFADWYSEKGYALIPWIELLDARKWPV 730
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Match: A0A812UYR4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UYR4_SYMMI) HSP 1 Score: 90.5 bits (223), Expect = 1.290e-18 Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 16 QSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSLSSEELTRAVDDGAVWTSAAIFAE-TATQTPNRIA--FDEFAAWYTEGGFRVSPWLELLDMGKW 333
+S+KLA AF L DE+ L+R LW++ RSFL L+ LS A+ LSS+E+TR D A++ ++ T T+ ++ A FD+ A WYT G+R++PWLELLDM KW
Sbjct: 380 KSSKLASAFELLDENKSGLLSRWRLWKFFRSFLCTLLTLSGAAQELSSDEITRVADGTALFACDSVLTSPTTTEKEDQYAATFDDIADWYTSAGYRIAPWLELLDMTKW 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86783.16237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86783.16237.1 >prot_H-elongata_contig86783.16237.1 ID=prot_H-elongata_contig86783.16237.1|Name=mRNA_H-elongata_contig86783.16237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MLNVFQSAKLAFAFGLHDEDGDERLTRRGLWRYTRSFLTALMALSFASSSback to top mRNA from alignment at H-elongata_contig86783:1406..2442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86783.16237.1 ID=mRNA_H-elongata_contig86783.16237.1|Name=mRNA_H-elongata_contig86783.16237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1037bp|location=Sequence derived from alignment at H-elongata_contig86783:1406..2442- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86783:1406..2442- >mRNA_H-elongata_contig86783.16237.1 ID=mRNA_H-elongata_contig86783.16237.1|Name=mRNA_H-elongata_contig86783.16237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig86783:1406..2442- (Himanthalia elongata Himel1 dioecious)back to top |