mRNA_H-elongata_contig8671.16230.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI) HSP 1 Score: 144 bits (364), Expect = 5.930e-41 Identity = 74/131 (56.49%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 7 FIPDKIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
F + GS+EGGSA W A+HLLKH ES LVCLDTW+G E +T M+ S + RF WNM K +R+ A KGDS+ + LVA+G +SSFDV+YVDASH M D L D LL+FRLLKVGG+MI DD
Sbjct: 63 FFVLESGSWEGGSASWVAEHLLKHSESLLVCLDTWDGGQEMENTGFDMV-----SVEERFHWNMGKAPNGERVVAFKGDSLESLAGLVASGLTSSFDVVYVDASHEMKDTLGDALLSFRLLKVGGVMIFDD 188
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI) HSP 1 Score: 120 bits (301), Expect = 7.920e-31 Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 25 GSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
GS++G SA W A+H+LKHPES LVCLDTW GSP ++ M + RFR NMA+ R+ A KG S+ + ++A+G S FD +++D SH M + L D LL+FR+LKVGG+MI DD
Sbjct: 93 GSWQGESASWIAEHILKHPESILVCLDTWNGSPPPENSGYEMAAI-----EDRFRSNMARVPNGDRVVAFKGTSLESLANILASGLDSRFDAVFLDGSHEMKNVLRDALLSFRMLKVGGVMIFDD 212
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.490e-30 Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query: 25 GSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
GS++G SA W A+H+LKHPES LVCLD W GSP ++ M + RFR NMA+ R+ A KG S+ + ++A+G S FD + +D SH M D L D LL+FR+LKVGG+MI DD
Sbjct: 16 GSWQGESASWIAEHVLKHPESILVCLDKWNGSPPPENSGYDMAAI-----EDRFRSNMARIPNGDRVVAFKGSSLESLANILASGLDSRFDAVLLDGSHEMNDVLGDALLSFRMLKVGGVMIFDD 135
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: UPI001CFD44E0 (class I SAM-dependent methyltransferase n=1 Tax=Roseicella sp. GB24 TaxID=2883479 RepID=UPI001CFD44E0) HSP 1 Score: 105 bits (262), Expect = 9.260e-26 Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
+IG FEG S LWF Q+LL+HPESR+ C+DT+ G E ++ L RFR N+ ++G+A + + ++GDS S L+A G ++ D+ Y+D SH D L D +LAFRLL GG+++ DD
Sbjct: 36 EIGCFEGRSTLWFLQNLLRHPESRITCIDTFAGGAEHSEAQTAGLF-------ERFRANLEESGQAGQAEVLRGDSFSGLSALIARG--TAVDLAYIDGSHEAPDVLADLVLAFRLLVPGGVILCDD 153
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A327MFH9_9PROT (Class I SAM-dependent methyltransferase n=1 Tax=Roseicella frigidaeris TaxID=2230885 RepID=A0A327MFH9_9PROT) HSP 1 Score: 98.6 bits (244), Expect = 4.160e-23 Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
+IGSFEG S LWF +LL+HPESRL C+DT+ G E D T +F RF+ N+A +G A + + ++ DS TL+ G + D+IY+D SH D L D +LAFRL GG+++ DD
Sbjct: 36 EIGSFEGRSTLWFLANLLRHPESRLTCIDTFAGGAEH-DAAQTTGLF------ERFQANLAASGAAAKAEVLRCDSATGLLTLLGRGGEAP-DLIYIDGSHEAPDVLTDLVLAFRLAPEGGVILCDD 154
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A7S4KFR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFR5_9EUKA) HSP 1 Score: 96.7 bits (239), Expect = 2.070e-22 Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWE------------GSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATG-------QSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
++G+FEG + +W A+HLL+H +S L+C+D W G+PE A+T+ RF N+A+T R++ +G ++ ++A + +FD+IYVDA H +D L D LAFRLL+VGG++ DD
Sbjct: 14 ELGAFEGSTTMWLAEHLLRHKDSWLLCVDLWSTASLAAVGQPIAGTPELANTL------------GRFSANVARTPNGGRVRTFRGSTLAALGGMIAAAADGDQAAEGDAFDLIYVDAGHSASDVLADAALAFRLLRVGGLVFFDD 147
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A3L7QJ61_9BACT (Class I SAM-dependent methyltransferase n=2 Tax=Bacteria TaxID=2 RepID=A0A3L7QJ61_9BACT) HSP 1 Score: 92.0 bits (227), Expect = 8.580e-21 Identity = 52/129 (40.31%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSM--LLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
+IGS EG SA+W AQHLL HP + L+C+D W + + RF N+A+TGRA +++ +K DS LL Q FD+IY+D SH L D +LAFR+LK G++I DD
Sbjct: 31 EIGSHEGRSAVWIAQHLLSHPSATLICIDPWPDA----------------EAEHRFDANIAETGRAPQVRKLKTDSWRGLLS-------QGPGFDLIYIDGSHEGRQVLEDAILAFRVLKRSGLLIFDD 136
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A4V3QY19_9SPHN (Class I SAM-dependent methyltransferase n=1 Tax=Sphingomonas gei TaxID=1395960 RepID=A0A4V3QY19_9SPHN) HSP 1 Score: 92.4 bits (228), Expect = 1.190e-20 Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
+IGSFEG + LW +L +HP+SR+ CLDT+EGS E ++ L + RF N++ + A R+ KG S TL A G + D++YVD SH+ AD L D +L+F++L+ GG+ I DD
Sbjct: 35 EIGSFEGQATLWMLANLARHPQSRIYCLDTFEGSEEHSEEEVADL-------EKRFASNISGSPYANRVTVYKGLSRRSLLTLSAEGVVA--DLVYVDGSHQAADVLDDLVLSFQVLRPGGVAICDD 152
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A849N5K6_9PROT (Class I SAM-dependent methyltransferase n=1 Tax=Roseicella sp. DB1501 TaxID=2730925 RepID=A0A849N5K6_9PROT) HSP 1 Score: 90.9 bits (224), Expect = 4.010e-20 Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
+IGSFEG S LWF +LL+HP SR+ C+DT+ G E D T +F RF+ N+A +G A + + ++ DS L+ G +IY+D SH AD L D +LAFRL GG+++ DD
Sbjct: 36 EIGSFEGRSTLWFLANLLRHPASRVTCIDTFAGGAEH-DAAQTTGLF------ERFQANLAASGEAVKAEVLRTDSASGLLRLLGRGGPGPA-LIYIDGSHEAADVLTDLVLAFRLAPEGGVILCDD 154
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A2D5WJ12_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5WJ12_9BACT) HSP 1 Score: 90.5 bits (223), Expect = 8.310e-20 Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAI--KGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
+IG FEG S W +LLKH SR+VC+DT+EG E A M S + F N+ KTGR ++ + + D+ LL+ L+ Q + FD IYVD SH D LVD +L FRLL VGG+ + DD
Sbjct: 53 EIGCFEGLSTCWMLNNLLKHSGSRMVCIDTFEGGREHAHDGTNMT-----SVRETFFRNVEKTGRTDIVRVLEERSDTGLLR--LLQENQEA-FDFIYVDGSHLSTDVLVDLVLGFRLLSVGGLCMCDD 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8671.16230.1 >prot_H-elongata_contig8671.16230.1 ID=prot_H-elongata_contig8671.16230.1|Name=mRNA_H-elongata_contig8671.16230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MLFIPDKIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMback to top mRNA from alignment at H-elongata_contig8671:3994..4919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8671.16230.1 ID=mRNA_H-elongata_contig8671.16230.1|Name=mRNA_H-elongata_contig8671.16230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=926bp|location=Sequence derived from alignment at H-elongata_contig8671:3994..4919- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8671:3994..4919- >mRNA_H-elongata_contig8671.16230.1 ID=mRNA_H-elongata_contig8671.16230.1|Name=mRNA_H-elongata_contig8671.16230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig8671:3994..4919- (Himanthalia elongata Himel1 dioecious)back to top |