mRNA_H-elongata_contig8671.16230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8671.16230.1
Unique NamemRNA_H-elongata_contig8671.16230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.930e-41
Identity = 74/131 (56.49%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    7 FIPDKIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            F   + GS+EGGSA W A+HLLKH ES LVCLDTW+G  E  +T   M+     S + RF WNM K    +R+ A KGDS+   + LVA+G +SSFDV+YVDASH M D L D LL+FRLLKVGG+MI DD
Sbjct:   63 FFVLESGSWEGGSASWVAEHLLKHSESLLVCLDTWDGGQEMENTGFDMV-----SVEERFHWNMGKAPNGERVVAFKGDSLESLAGLVASGLTSSFDVVYVDASHEMKDTLGDALLSFRLLKVGGVMIFDD 188          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 7.920e-31
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:   25 GSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            GS++G SA W A+H+LKHPES LVCLDTW GSP   ++   M        + RFR NMA+     R+ A KG S+   + ++A+G  S FD +++D SH M + L D LL+FR+LKVGG+MI DD
Sbjct:   93 GSWQGESASWIAEHILKHPESILVCLDTWNGSPPPENSGYEMAAI-----EDRFRSNMARVPNGDRVVAFKGTSLESLANILASGLDSRFDAVFLDGSHEMKNVLRDALLSFRMLKVGGVMIFDD 212          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.490e-30
Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   25 GSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            GS++G SA W A+H+LKHPES LVCLD W GSP   ++   M        + RFR NMA+     R+ A KG S+   + ++A+G  S FD + +D SH M D L D LL+FR+LKVGG+MI DD
Sbjct:   16 GSWQGESASWIAEHVLKHPESILVCLDKWNGSPPPENSGYDMAAI-----EDRFRSNMARIPNGDRVVAFKGSSLESLANILASGLDSRFDAVLLDGSHEMNDVLGDALLSFRMLKVGGVMIFDD 135          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: UPI001CFD44E0 (class I SAM-dependent methyltransferase n=1 Tax=Roseicella sp. GB24 TaxID=2883479 RepID=UPI001CFD44E0)

HSP 1 Score: 105 bits (262), Expect = 9.260e-26
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            +IG FEG S LWF Q+LL+HPESR+ C+DT+ G  E ++     L         RFR N+ ++G+A + + ++GDS    S L+A G  ++ D+ Y+D SH   D L D +LAFRLL  GG+++ DD
Sbjct:   36 EIGCFEGRSTLWFLQNLLRHPESRITCIDTFAGGAEHSEAQTAGLF-------ERFRANLEESGQAGQAEVLRGDSFSGLSALIARG--TAVDLAYIDGSHEAPDVLADLVLAFRLLVPGGVILCDD 153          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A327MFH9_9PROT (Class I SAM-dependent methyltransferase n=1 Tax=Roseicella frigidaeris TaxID=2230885 RepID=A0A327MFH9_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 4.160e-23
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            +IGSFEG S LWF  +LL+HPESRL C+DT+ G  E  D   T  +F       RF+ N+A +G A + + ++ DS     TL+  G  +  D+IY+D SH   D L D +LAFRL   GG+++ DD
Sbjct:   36 EIGSFEGRSTLWFLANLLRHPESRLTCIDTFAGGAEH-DAAQTTGLF------ERFQANLAASGAAAKAEVLRCDSATGLLTLLGRGGEAP-DLIYIDGSHEAPDVLTDLVLAFRLAPEGGVILCDD 154          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A7S4KFR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFR5_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 2.070e-22
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWE------------GSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATG-------QSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            ++G+FEG + +W A+HLL+H +S L+C+D W             G+PE A+T+             RF  N+A+T    R++  +G ++     ++A         +  +FD+IYVDA H  +D L D  LAFRLL+VGG++  DD
Sbjct:   14 ELGAFEGSTTMWLAEHLLRHKDSWLLCVDLWSTASLAAVGQPIAGTPELANTL------------GRFSANVARTPNGGRVRTFRGSTLAALGGMIAAAADGDQAAEGDAFDLIYVDAGHSASDVLADAALAFRLLRVGGLVFFDD 147          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A3L7QJ61_9BACT (Class I SAM-dependent methyltransferase n=2 Tax=Bacteria TaxID=2 RepID=A0A3L7QJ61_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 8.580e-21
Identity = 52/129 (40.31%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSM--LLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            +IGS EG SA+W AQHLL HP + L+C+D W  +                  + RF  N+A+TGRA +++ +K DS   LL        Q   FD+IY+D SH     L D +LAFR+LK  G++I DD
Sbjct:   31 EIGSHEGRSAVWIAQHLLSHPSATLICIDPWPDA----------------EAEHRFDANIAETGRAPQVRKLKTDSWRGLLS-------QGPGFDLIYIDGSHEGRQVLEDAILAFRVLKRSGLLIFDD 136          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A4V3QY19_9SPHN (Class I SAM-dependent methyltransferase n=1 Tax=Sphingomonas gei TaxID=1395960 RepID=A0A4V3QY19_9SPHN)

HSP 1 Score: 92.4 bits (228), Expect = 1.190e-20
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            +IGSFEG + LW   +L +HP+SR+ CLDT+EGS E ++     L       + RF  N++ +  A R+   KG S     TL A G  +  D++YVD SH+ AD L D +L+F++L+ GG+ I DD
Sbjct:   35 EIGSFEGQATLWMLANLARHPQSRIYCLDTFEGSEEHSEEEVADL-------EKRFASNISGSPYANRVTVYKGLSRRSLLTLSAEGVVA--DLVYVDGSHQAADVLDDLVLSFQVLRPGGVAICDD 152          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A849N5K6_9PROT (Class I SAM-dependent methyltransferase n=1 Tax=Roseicella sp. DB1501 TaxID=2730925 RepID=A0A849N5K6_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 4.010e-20
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            +IGSFEG S LWF  +LL+HP SR+ C+DT+ G  E  D   T  +F       RF+ N+A +G A + + ++ DS      L+  G      +IY+D SH  AD L D +LAFRL   GG+++ DD
Sbjct:   36 EIGSFEGRSTLWFLANLLRHPASRVTCIDTFAGGAEH-DAAQTTGLF------ERFQANLAASGEAVKAEVLRTDSASGLLRLLGRGGPGPA-LIYIDGSHEAADVLTDLVLAFRLAPEGGVILCDD 154          
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Match: A0A2D5WJ12_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5WJ12_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 8.310e-20
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 1
Query:   19 KIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTMLVFCSLSPQARFRWNMAKTGRAQRIQAI--KGDSMLLQSTLVATGQSSSFDVIYVDASHRMADALVDCLLAFRLLKVGGIMIVDD 399
            +IG FEG S  W   +LLKH  SR+VC+DT+EG  E A     M      S +  F  N+ KTGR   ++ +  + D+ LL+  L+   Q + FD IYVD SH   D LVD +L FRLL VGG+ + DD
Sbjct:   53 EIGCFEGLSTCWMLNNLLKHSGSRMVCIDTFEGGREHAHDGTNMT-----SVRETFFRNVEKTGRTDIVRVLEERSDTGLLR--LLQENQEA-FDFIYVDGSHLSTDVLVDLVLGFRLLSVGGLCMCDD 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8671.16230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK47_ECTSI5.930e-4156.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK29_ECTSI7.920e-3148.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQS8_9PHAE1.490e-3048.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001CFD44E09.260e-2642.52class I SAM-dependent methyltransferase n=1 Tax=Ro... [more]
A0A327MFH9_9PROT4.160e-2343.31Class I SAM-dependent methyltransferase n=1 Tax=Ro... [more]
A0A7S4KFR5_9EUKA2.070e-2234.25Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A3L7QJ61_9BACT8.580e-2140.31Class I SAM-dependent methyltransferase n=2 Tax=Ba... [more]
A0A4V3QY19_9SPHN1.190e-2040.94Class I SAM-dependent methyltransferase n=1 Tax=Sp... [more]
A0A849N5K6_9PROT4.010e-2040.94Class I SAM-dependent methyltransferase n=1 Tax=Ro... [more]
A0A2D5WJ12_9BACT8.310e-2043.41Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8671contigH-elongata_contig8671:3994..4919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue2.2e-32
Seed eggNOG ortholog2880.D7FK47
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2DZ7R@1,2S6WK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8671.16230.1prot_H-elongata_contig8671.16230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8671 3994..4919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931268.319698-CDS-H-elongata_contig8671:3993..40771622931268.319698-CDS-H-elongata_contig8671:3993..4077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 3994..4077 -
1691679766.7979865-CDS-H-elongata_contig8671:3993..40771691679766.7979865-CDS-H-elongata_contig8671:3993..4077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 3994..4077 -
1622931268.3322964-CDS-H-elongata_contig8671:4294..44831622931268.3322964-CDS-H-elongata_contig8671:4294..4483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 4295..4483 -
1691679766.8094325-CDS-H-elongata_contig8671:4294..44831691679766.8094325-CDS-H-elongata_contig8671:4294..4483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 4295..4483 -
1622931268.346168-CDS-H-elongata_contig8671:4784..49191622931268.346168-CDS-H-elongata_contig8671:4784..4919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 4785..4919 -
1691679766.81909-CDS-H-elongata_contig8671:4784..49191691679766.81909-CDS-H-elongata_contig8671:4784..4919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 4785..4919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8671.16230.1

>prot_H-elongata_contig8671.16230.1 ID=prot_H-elongata_contig8671.16230.1|Name=mRNA_H-elongata_contig8671.16230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MLFIPDKIGSFEGGSALWFAQHLLKHPESRLVCLDTWEGSPEFADTVCTM
LVFCSLSPQARFRWNMAKTGRAQRIQAIKGDSMLLQSTLVATGQSSSFDV
IYVDASHRMADALVDCLLAFRLLKVGGIMIVDDEIL
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mRNA from alignment at H-elongata_contig8671:3994..4919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8671.16230.1 ID=mRNA_H-elongata_contig8671.16230.1|Name=mRNA_H-elongata_contig8671.16230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=926bp|location=Sequence derived from alignment at H-elongata_contig8671:3994..4919- (Himanthalia elongata Himel1 dioecious)
ATGTTATTTATTCCCGACAAGATTGGGAGTTTTGAGGGAGGGTCTGCGCT TTGGTTCGCTCAACATCTTTTAAAGCACCCTGAATCGCGCTTGGTATGCC TTGACACCTGGGAGGGGAGTCCCGAATTTGCCGACGTGGACATGTCCGTG GTCGAGGTGAATCTATTTTAATATGCAAACTTTACATTGGTCTCGAAAAC TGCCCCCCCCCCCCCGCCTGCGCGATGATCGGCATACTTTGGACGGGTTC CTTTGGTAGCTACATGTCTCACCAAACGATCAGTCTACACGACCTACGAC GGAAGAGGTTCGATGTTTTATTGTCACATAGTGACATAATGTAAATCCTG ATTCCACCGGAGGTTATCATAAACGAACAAAATATCGGCGATTACGTGAA GGCATAAGTACCGCAGAATGAACGACTTGAAGCAAGACCGTTTGTACGAT GCTCGTATTTTGTTCGCTCTCGCCACAGGCCCGATTTCGGTGGAATATGG CAAAGACGGGTCGGGCTCAGCGCATCCAAGCTATCAAGGGGGATTCTATG CTGTTACAGTCGACCCTAGTGGCAACAGGGCAGAGCTCATCGTTCGATGT TATCTACGTGGACGCATCCCACAGAGTGAGATGGCGAAATATGACTCCAT GTTGCCGATAAATAAACGCATCTTTCTATATGAAAGCCTGGACGCTTCGC AATACCCCGCCCATGTTTGGTACCCAATGCCGTATGTACGTCTGTCGTAT GCGAAAAACCGATTGACAATCACAATTACAATTACGCGCCCGTTAAGTTA GCAGACATTCATAAAATCGGATTTCGCGTGGATACTTTTCAGATGGCGGA TGCGCTAGTGGATTGTTTGCTTGCGTTCAGGTTGCTCAAGGTTGGCGGCA TCATGATAGTCGACGATGAGATCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig8671:3994..4919-

>mRNA_H-elongata_contig8671.16230.1 ID=mRNA_H-elongata_contig8671.16230.1|Name=mRNA_H-elongata_contig8671.16230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig8671:3994..4919- (Himanthalia elongata Himel1 dioecious)
ATGTTATTTATTCCCGACAAGATTGGGAGTTTTGAGGGAGGGTCTGCGCT
TTGGTTCGCTCAACATCTTTTAAAGCACCCTGAATCGCGCTTGGTATGCC
TTGACACCTGGGAGGGGAGTCCCGAATTTGCCGACATGTTATTTATTCCC
GACAAGATTGGGAGTTTTGAGGGAGGGTCTGCGCTTTGGTTCGCTCAACA
TCTTTTAAAGCACCCTGAATCGCGCTTGGTATGCCTTGACACCTGGGAGG
GGAGTCCCGAATTTGCCGACACCGTTTGTACGATGCTCGTATTTTGTTCG
CTCTCGCCACAGGCCCGATTTCGGTGGAATATGGCAAAGACGGGTCGGGC
TCAGCGCATCCAAGCTATCAAGGGGGATTCTATGCTGTTACAGTCGACCC
TAGTGGCAACAGGGCAGAGCTCATCGTTCGATGTTATCTACGTGGACGCA
TCCCACAGAACCGTTTGTACGATGCTCGTATTTTGTTCGCTCTCGCCACA
GGCCCGATTTCGGTGGAATATGGCAAAGACGGGTCGGGCTCAGCGCATCC
AAGCTATCAAGGGGGATTCTATGCTGTTACAGTCGACCCTAGTGGCAACA
GGGCAGAGCTCATCGTTCGATGTTATCTACGTGGACGCATCCCACAGAAT
GGCGGATGCGCTAGTGGATTGTTTGCTTGCGTTCAGGTTGCTCAAGGTTG
GCGGCATCATGATAGTCGACGATGAGATCCTCATGGCGGATGCGCTAGTG
GATTGTTTGCTTGCGTTCAGGTTGCTCAAGGTTGGCGGCATCATGATAGT
CGACGATGAGATCCTC
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