mRNA_H-elongata_contig86196.16196.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86196.16196.1
Unique NamemRNA_H-elongata_contig86196.16196.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A835ZCJ6_9STRA (Anthranilate phosphoribosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ6_9STRA)

HSP 1 Score: 333 bits (854), Expect = 3.680e-109
Identity = 170/232 (73.28%), Postives = 194/232 (83.62%), Query Frame = 3
Query:  117 PRSRLASTLKPYLEKLIDGQDLSAVDTEDAWVQIMEGAR-AEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVSTGINSGTYAFGWSLN 809
            P +RL S+LKPYLEKLI GQDL+A DTEDAWVQIM+GA   EQVA++LCL+R KGET+TE+AGCVRGM++  VPVHV G +LDI GTGGDGA TIN+STAS +LAAAAGA+VCKFGNRSVSSMCGSADVLEALGI+V LTP QV  CC E GVAFM+AP HYPAMKNVAPVRKALG+RT FNILGPMT+PAGAQ VVIGV+ D L+PLMA AL+EV   +  G    G  L+
Sbjct:   53 PPARLHSSLKPYLEKLIAGQDLAAADTEDAWVQIMQGAAPTEQVAALLCLLRAKGETSTELAGCVRGMKASCVPVHVDGALLDIVGTGGDGADTINVSTASAVLAAAAGARVCKFGNRSVSSMCGSADVLEALGISVELTPTQVERCCQEAGVAFMYAPTHYPAMKNVAPVRKALGVRTAFNILGPMTSPAGAQHVVIGVFQDELMPLMAGALREVGY-VERGVIVHGCGLD 283          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: D7FW59_ECTSI (Anthranilate Phosphoribosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW59_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 6.370e-109
Identity = 178/250 (71.20%), Postives = 208/250 (83.20%), Query Frame = 3
Query:   30 MRFIFAICFIIG-GKAFVHKLSPVHFAPVA---PRSR-LASTLKPYLEKLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVS 764
            MRF   + +++   +AFV     V  +PV+   P S  L S+LKPYLEKLIDG +LSA D+E+A V IMEGA+AEQVA++LCL+RMKGETATEIAGCVRGM+S AVPVHV G++LDI GTGGDGAHTIN+STASVILAAAAGA+VCKFGNRSVSS+CGSADVLEALGI+V+LTPEQVAECC +C VAFMFAPNHYPAMKNVAPVRKALG+RT+FNILGPMTNPAGAQRVV  + H  ++      L E+S
Sbjct:    1 MRFAAVLLYLVAVARAFVPNFGAVR-SPVSTCRPCSLGLGSSLKPYLEKLIDGHELSAADSENALVSIMEGAKAEQVAALLCLLRMKGETATEIAGCVRGMKSVAVPVHVEGDLLDIVGTGGDGAHTINVSTASVILAAAAGAKVCKFGNRSVSSLCGSADVLEALGISVDLTPEQVAECCNDCNVAFMFAPNHYPAMKNVAPVRKALGVRTLFNILGPMTNPAGAQRVVGYIEHGVIVH--GAGLDEIS 247          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S1YUD4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YUD4_TRICV)

HSP 1 Score: 250 bits (638), Expect = 4.290e-77
Identity = 132/212 (62.26%), Postives = 160/212 (75.47%), Query Frame = 3
Query:  129 LASTLKPYLEKLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGN-MLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEV 761
            L +TLKPY++ LIDG+ L++ + E A+ +I+ GA   QV S+L L+R +GET  E+AG VR M      V +    +LDI GTGGDGA TINISTASV+LAAA G  V K GNRSVSS CGSADVLEALG+ V+L PEQV +C  +CGVAFM+AP ++PAMK VAPVRK LG+RT FNILGPMTN AGAQR VIGV+H+ L PLMA AL+ V
Sbjct:   15 LTATLKPYIQTLIDGEHLTSAEAESAFDEILSGADEVQVGSLLSLLRARGETPDELAGMVRAMNKACNAVDLGDRRLLDIVGTGGDGADTINISTASVVLAAACGCTVAKAGNRSVSSRCGSADVLEALGVQVDLNPEQVVQCVEKCGVAFMYAPVNHPAMKYVAPVRKKLGVRTCFNILGPMTNAAGAQRAVIGVFHEGLAPLMAGALRAV 226          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S2CV21_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CV21_9STRA)

HSP 1 Score: 252 bits (644), Expect = 4.790e-77
Identity = 135/242 (55.79%), Postives = 172/242 (71.07%), Query Frame = 3
Query:   84 KLSPVHFAPVAPRSRLASTLKPYLEKLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVSTGINSGTYAFGWSLN 809
            K++    A  AP S  A +LKPY+EKL+ G+ L+  + ++    I++GA   QVAS L LMR  GET  E+AG V  M+   VPV V G MLDI GTGGDGAHTINISTA+ +LAAA G +  K GNRSVSS CGSADVLEALGI++ LT E V EC A+CG+ FMFAP ++PAMK V P+RKALG+R+VFNILGP+TN AGAQ VVIGV+ + L+ +MA +L E+   ++ G   +G  L+
Sbjct:   86 KVAVASAAVAAPPS--APSLKPYIEKLVAGESLTKEEAKEVCGAILQGADQIQVASCLMLMRRNGETPAEVAGFVAAMKEACVPVAVEGKMLDIVGTGGDGAHTINISTAAALLAAACGCKTAKAGNRSVSSQCGSADVLEALGISMALTAENVGECVAQCGMGFMFAPVNHPAMKMVVPIRKALGVRSVFNILGPLTNAAGAQHVVIGVFQEELIDIMANSLIEIGN-VDHGVVIYGVGLD 324          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S1DCB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCB7_CYCTE)

HSP 1 Score: 249 bits (637), Expect = 1.120e-76
Identity = 136/228 (59.65%), Postives = 171/228 (75.00%), Query Frame = 3
Query:   90 SPV-HFAPVAPRSRLASTLKPYLEKLIDGQ-DLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGN-MLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVS 764
            SP+  F  ++   R  +TLKPY+E LI G+  L++ +TE A+ +I+ GA   QV S+L L+R +GET +EIAG V+ M +    V +    +LDI GTGGDGA TINISTASV+L+AA G  V K GNRSVSS CGSADVLEALG+ V+LTP+QV EC  +C VAFMFAP ++PAMK+VAP+RK LG+RT FNILGPMTN AGAQR VIGV+H  L+PLMA AL+EV+
Sbjct:   26 SPIPKFTRMSTTQRRQATLKPYIETLIGGERSLTSEETEAAFGEILSGADEVQVGSLLTLLRARGETPSEIAGMVKAMNAACNAVDLGDKKLLDIVGTGGDGADTINISTASVVLSAACGCTVAKAGNRSVSSRCGSADVLEALGVKVDLTPDQVVECVEKCNVAFMFAPVNHPAMKHVAPIRKKLGVRTCFNILGPMTNAAGAQRAVIGVFHPELMPLMAGALKEVA 253          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S4QNE5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QNE5_9STRA)

HSP 1 Score: 245 bits (626), Expect = 4.330e-76
Identity = 136/221 (61.54%), Postives = 163/221 (73.76%), Query Frame = 3
Query:  105 APVAPRSRLASTLKPYLEKLIDGQ-DLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVP-GNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEV 761
            AP+      AS LKPY+E LI+G+  L++ +   A+ +I+ GA A QV S+L L+R +GET  EIAG VR M      V +P   +LDI GTGGDGA TINISTASV+LAAAAG  V K GNRSVSS CGSADVLE LG+ V+L PEQV +C AECGVAFMFAP ++P+M++VAPVRK LG+RT FNILGPMTN A AQR VIGV+H  L PLMA AL+ V
Sbjct:   49 APLRTTMTTAS-LKPYIETLIEGERHLTSDEAHAAFTEILAGADAVQVGSLLTLLRARGETPEEIAGMVRAMNDACNAVKIPDAKLLDIVGTGGDGADTINISTASVVLAAAAGCTVAKAGNRSVSSACGSADVLETLGVAVDLQPEQVVQCVAECGVAFMFAPVNHPSMRHVAPVRKKLGVRTCFNILGPMTNAASAQRAVIGVFHGDLAPLMAGALKSV 268          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S2HRI9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HRI9_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.040e-75
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 3
Query:   93 PVHFAPVAPRSRLASTLKPYLEKLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVSTGINSGTYAFGWSLN 809
            P+  AP    +   ++LKP+LEKL+ G+ LS  +   A   I++GA   QV+++L LMR  GE+  E+AG V  M    VPV V G MLDI GTGGDGAHTINISTA+ ILAAA G +  K GNRSVSS CGSADVLEALG+++ LT +Q+ EC   CG+ FM+AP ++PAM+ VAP+RK+LG+R+VFNILGP+TN AGAQRVVIGV+ + LL  MA AL EV   ++ G   FG  L+
Sbjct:   48 PLRSAPPQAPAIPVTSLKPFLEKLVAGESLSFDEARAACSSILQGADQLQVSALLMLMRRNGESPAEVAGFVAAMTDACVPVKVSGKMLDIVGTGGDGAHTINISTAAAILAAACGCKTSKAGNRSVSSQCGSADVLEALGVSLTLTADQMGECVEACGMGFMYAPVNHPAMRMVAPIRKSLGVRSVFNILGPLTNAAGAQRVVIGVFTEDLLETMANALIEVGK-VDHGVIVFGVGLD 285          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S4QLM7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLM7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 7.810e-75
Identity = 136/221 (61.54%), Postives = 163/221 (73.76%), Query Frame = 3
Query:  105 APVAPRSRLASTLKPYLEKLIDGQ-DLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVP-GNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEV 761
            AP+      AS LKPY+E LI+G+  L++ +   A+ +I+ GA A QV S+L L+R +GET  EIAG VR M      V +P   +LDI GTGGDGA TINISTASV+LAAAAG  V K GNRSVSS CGSADVLE LG+ V+L PEQV +C AECGVAFMFAP ++P+M++VAPVRK LG+RT FNILGPMTN A AQR VIGV+H  L PLMA AL+ V
Sbjct:   49 APLRTTMTTAS-LKPYIETLIEGERHLTSDEAHAAFTEILAGADAVQVGSLLTLLRARGETPEEIAGMVRAMNDACNAVKIPDAKLLDIVGTGGDGADTINISTASVVLAAAAGCTVAKAGNRSVSSACGSADVLETLGVAVDLQPEQVVQCVAECGVAFMFAPVNHPSMRHVAPVRKKLGVRTCFNILGPMTNAASAQRAVIGVFHGDLAPLMAGALKSV 268          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: A0A7S2RLD9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLD9_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.540e-74
Identity = 129/232 (55.60%), Postives = 166/232 (71.55%), Query Frame = 3
Query:  114 APRSRLASTLKPYLEKLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVSTGINSGTYAFGWSLN 809
            A  +  A +LKPYLE+L+ G+ LS  D ++    I++GA   QVAS+L LMR  GET  E+AG V  M+   VPV V G +LDI GTGGDGAHTINISTA+ ILAAA G +  K GNRSVSS CGSADVLEALG+ ++L+ +QV  C  + GV FM+AP ++PAM+ VAP+RKALG+R+VFN+LGPMTN AGAQ VVIGV+ + L+ +MA +L E+   I+ G    G  L+
Sbjct:   63 ATSTSTAPSLKPYLERLVAGESLSKEDAKEVCGAILQGADQLQVASLLMLMRRNGETPAEVAGFVAAMKDACVPVSVAGKLLDIVGTGGDGAHTINISTAAAILAAACGCKTAKAGNRSVSSKCGSADVLEALGVAIDLSADQVGTCVEKSGVGFMYAPVNHPAMRLVAPIRKALGVRSVFNLLGPMTNAAGAQHVVIGVFTEDLMDIMANSLMEIGN-IDHGVVIHGVGLD 293          
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Match: K8YW28_NANGC (Anthranilate phosphoribosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YW28_NANGC)

HSP 1 Score: 237 bits (605), Expect = 4.400e-72
Identity = 122/211 (57.82%), Postives = 154/211 (72.99%), Query Frame = 3
Query:  135 STLKPYLEKLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCVRGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKFGNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAMKNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQEVST 767
            ++LKP+LE +I G  LS+ D E A+ +I+ G+   QV ++L ++R +GET  EIAG VR M     PV+V G +LDI GTGGDGAHTINISTA++ILAAA G +  K GNRSVSS CGSADVLE LGI++ LT EQVAEC    GV FMFAP  +P MK VAP+RKALG+RT FNI+GP+ N AGAQ  V+GV+ + LL ++A  L E+ T
Sbjct:   27 TSLKPFLEHIIAGASLSSSDVEAAFDRILAGSDPVQVGALLAMLRQRGETPVEIAGMVRAMLKQRYPVNVTGKLLDIVGTGGDGAHTINISTAAIILAAACGCKAAKLGNRSVSSKCGSADVLETLGIDMELTAEQVAECIETTGVGFMFAPVVHPTMKKVAPIRKALGVRTAFNIVGPLLNAAGAQHAVVGVFQERLLDVLAGTLGEIGT 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86196.16196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCJ6_9STRA3.680e-10973.28Anthranilate phosphoribosyltransferase n=1 Tax=Tri... [more]
D7FW59_ECTSI6.370e-10971.20Anthranilate Phosphoribosyltransferase n=2 Tax=Ect... [more]
A0A7S1YUD4_TRICV4.290e-7762.26Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2CV21_9STRA4.790e-7755.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1DCB7_CYCTE1.120e-7659.65Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4QNE5_9STRA4.330e-7661.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HRI9_9STRA1.040e-7555.23Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4QLM7_9STRA7.810e-7561.54Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2RLD9_9STRA1.540e-7455.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K8YW28_NANGC4.400e-7257.82Anthranilate phosphoribosyltransferase n=2 Tax=Mon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86196contigH-elongata_contig86196:1116..2331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue2.3e-89
Seed eggNOG ortholog2880.D7FW59
Preferred nameTRP4
KEGG rclassRC00440
KEGG koko:K00766
KEGG ReactionR01073
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.anthranilate phosphoribosyltransferase activity
EggNOG OGsCOG0547@1,KOG1438@2759
EC2.4.2.18
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size1030
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86196.16196.1prot_H-elongata_contig86196.16196.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86196 1322..2323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.7209435-UTR-H-elongata_contig86196:1115..13211622931264.7209435-UTR-H-elongata_contig86196:1115..1321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86196 1116..1321 -
1691679765.3182588-UTR-H-elongata_contig86196:1115..13211691679765.3182588-UTR-H-elongata_contig86196:1115..1321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86196 1116..1321 -
1622931264.7646375-UTR-H-elongata_contig86196:2323..23311622931264.7646375-UTR-H-elongata_contig86196:2323..2331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86196 2324..2331 -
1691679765.3690076-UTR-H-elongata_contig86196:2323..23311691679765.3690076-UTR-H-elongata_contig86196:2323..2331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86196 2324..2331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.7336667-CDS-H-elongata_contig86196:1321..20491622931264.7336667-CDS-H-elongata_contig86196:1321..2049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86196 1322..2049 -
1691679765.3419154-CDS-H-elongata_contig86196:1321..20491691679765.3419154-CDS-H-elongata_contig86196:1321..2049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86196 1322..2049 -
1622931264.7489965-CDS-H-elongata_contig86196:2235..23231622931264.7489965-CDS-H-elongata_contig86196:2235..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86196 2236..2323 -
1691679765.3594906-CDS-H-elongata_contig86196:2235..23231691679765.3594906-CDS-H-elongata_contig86196:2235..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86196 2236..2323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86196.16196.1

>prot_H-elongata_contig86196.16196.1 ID=prot_H-elongata_contig86196.16196.1|Name=mRNA_H-elongata_contig86196.16196.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
MSLHIARMRFIFAICFIIGGKAFVHKLSPVHFAPVAPRSRLASTLKPYLE
KLIDGQDLSAVDTEDAWVQIMEGARAEQVASMLCLMRMKGETATEIAGCV
RGMRSFAVPVHVPGNMLDIAGTGGDGAHTINISTASVILAAAAGAQVCKF
GNRSVSSMCGSADVLEALGINVNLTPEQVAECCAECGVAFMFAPNHYPAM
KNVAPVRKALGIRTVFNILGPMTNPAGAQRVVIGVYHDSLLPLMARALQE
VSTGINSGTYAFGWSLNYNVK*
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mRNA from alignment at H-elongata_contig86196:1116..2331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86196.16196.1 ID=mRNA_H-elongata_contig86196.16196.1|Name=mRNA_H-elongata_contig86196.16196.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1216bp|location=Sequence derived from alignment at H-elongata_contig86196:1116..2331- (Himanthalia elongata Himel1 dioecious)
ACACTGACATGTCACTTCATATTGCAAGGATGCGGTTTATTTTTGCGATA TGCTTCATAATTGGAGGGAAAGCTTTTGTCCACAAATTAAGCCCAGGTGC GGAGTTGGAAAGTATTAAAAGATATTTCAAGCTGCGATGACGATCAAGAA TCGCGCTTGACCGTTTCTATGGTACGCCGCTTTATCCGATGATGAGCAGG GCTAGAGCACTACTGGTATTGCGTAGTGCGTTCACTCTTAATTTTGATTG TACCCAACTTCATGCCGCTTGCCTGCGCTCAGTTCATTTTGCTCCTGTAG CACCAAGATCACGTCTTGCTTCTACCCTCAAACCATACCTGGAAAAGCTC ATCGACGGCCAGGATTTGTCGGCGGTTGATACGGAAGACGCGTGGGTACA GATCATGGAAGGGGCACGAGCAGAACAGGTGGCAAGTATGCTTTGCCTCA TGCGAATGAAGGGAGAAACGGCAACAGAAATAGCAGGCTGCGTGCGTGGG ATGAGAAGCTTTGCCGTGCCCGTACACGTGCCAGGAAATATGTTGGACAT CGCCGGTACTGGAGGCGATGGCGCGCACACCATCAACATCTCCACGGCGT CCGTCATCCTGGCTGCAGCGGCTGGAGCTCAAGTTTGCAAGTTTGGAAAC CGGTCGGTATCTTCCATGTGCGGTTCTGCAGACGTCTTGGAGGCTCTGGG CATAAACGTGAACCTCACCCCCGAACAAGTGGCCGAATGCTGTGCAGAGT GTGGCGTTGCCTTCATGTTTGCGCCAAACCACTACCCCGCTATGAAGAAT GTGGCTCCCGTCCGGAAGGCGCTTGGTATTCGCACGGTTTTTAATATATT GGGTCCGATGACGAACCCAGCTGGTGCGCAGCGTGTGGTGATCGGAGTTT ATCATGATTCCCTATTGCCACTTATGGCTCGAGCTCTCCAAGAGGTGAGT ACGGGGATAAATTCAGGCACATACGCTTTCGGATGGTCTCTAAATTATAA TGTGAAGTGAAATTAGACACCAGCCCCGACGGAGATAGGCTCTGGCTTTT TTCATATATTTTTCTTAAAACAAATTGGCTCGATCAACGAAATCGTTCAC CTCCCCCACGTAGGCGCAGAGCCTCTACGAGTCGATTTTATCTAGTATCC TCGTACCAGTATCCTTTTTCGTGCTTATCTCTTCTGCCAACTGTTACCGC AGCAAAAAAAATGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig86196:1116..2331-

>mRNA_H-elongata_contig86196.16196.1 ID=mRNA_H-elongata_contig86196.16196.1|Name=mRNA_H-elongata_contig86196.16196.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig86196:1116..2331- (Himanthalia elongata Himel1 dioecious)
ATGTCACTTCATATTGCAAGGATGCGGTTTATTTTTGCGATATGCTTCAT
AATTGGAGGGAAAGCTTTTGTCCACAAATTAAGCCCAGATGTCACTTCAT
ATTGCAAGGATGCGGTTTATTTTTGCGATATGCTTCATAATTGGAGGGAA
AGCTTTTGTCCACAAATTAAGCCCAGTTCATTTTGCTCCTGTAGCACCAA
GATCACGTCTTGCTTCTACCCTCAAACCATACCTGGAAAAGCTCATCGAC
GGCCAGGATTTGTCGGCGGTTGATACGGAAGACGCGTGGGTACAGATCAT
GGAAGGGGCACGAGCAGAACAGGTGGCAAGTATGCTTTGCCTCATGCGAA
TGAAGGGAGAAACGGCAACAGAAATAGCAGGCTGCGTGCGTGGGATGAGA
AGCTTTGCCGTGCCCGTACACGTGCCAGGAAATATGTTGGACATCGCCGG
TACTGGAGGCGATGGCGCGCACACCATCAACATCTCCACGGCGTCCGTCA
TCCTGGCTGCAGCGGCTGGAGCTCAAGTTTGCAAGTTTGGAAACCGGTCG
GTATCTTCCATGTGCGGTTCTGCAGACGTCTTGGAGGCTCTGGGCATAAA
CGTGAACCTCACCCCCGAACAAGTGGCCGAATGCTGTGCAGAGTGTGGCG
TTGCCTTCATGTTTGCGCCAAACCACTACCCCGCTATGAAGAATGTGGCT
CCCGTCCGGAAGGCGCTTGGTATTCGCACGGTTTTTAATATATTGGGTCC
GATGACGAACCCAGCTGGTGCGCAGCGTGTGGTGATCGGAGTTTATCATG
ATTCCCTATTGCCACTTATGGCTCGAGCTCTCCAAGAGGTGAGTACGGGG
ATAAATTCAGGCACATACGCTTTCGGATGGTCTCTAAATTATAATGTGAA
GTGATTCATTTTGCTCCTGTAGCACCAAGATCACGTCTTGCTTCTACCCT
CAAACCATACCTGGAAAAGCTCATCGACGGCCAGGATTTGTCGGCGGTTG
ATACGGAAGACGCGTGGGTACAGATCATGGAAGGGGCACGAGCAGAACAG
GTGGCAAGTATGCTTTGCCTCATGCGAATGAAGGGAGAAACGGCAACAGA
AATAGCAGGCTGCGTGCGTGGGATGAGAAGCTTTGCCGTGCCCGTACACG
TGCCAGGAAATATGTTGGACATCGCCGGTACTGGAGGCGATGGCGCGCAC
ACCATCAACATCTCCACGGCGTCCGTCATCCTGGCTGCAGCGGCTGGAGC
TCAAGTTTGCAAGTTTGGAAACCGGTCGGTATCTTCCATGTGCGGTTCTG
CAGACGTCTTGGAGGCTCTGGGCATAAACGTGAACCTCACCCCCGAACAA
GTGGCCGAATGCTGTGCAGAGTGTGGCGTTGCCTTCATGTTTGCGCCAAA
CCACTACCCCGCTATGAAGAATGTGGCTCCCGTCCGGAAGGCGCTTGGTA
TTCGCACGGTTTTTAATATATTGGGTCCGATGACGAACCCAGCTGGTGCG
CAGCGTGTGGTGATCGGAGTTTATCATGATTCCCTATTGCCACTTATGGC
TCGAGCTCTCCAAGAGGTGAGTACGGGGATAAATTCAGGCACATACGCTT
TCGGATGGTCTCTAAATTATAATGTGAAGTGA
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