mRNA_H-elongata_contig85772.16160.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A6H5JX55_9PHAE (Glutaredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX55_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.910e-15 Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 3
Query: 6 FVEQEANTASMRKAMASIAG-KTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKSL 173
+++QE NTA +RKAM ++A +TSVPQIWI+ +H+GGCDDLKAL+ TGDLG L+ +
Sbjct: 135 YIDQEPNTAEIRKAMTALAANRTSVPQIWINQKHVGGCDDLKALDKTGDLGVALEGI 191
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: D7G375_ECTSI (Glutaredoxin glutaredoxin/malate transporter fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G375_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 8.770e-15 Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 3
Query: 6 FVEQEANTASMRKAMASIAG-KTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKSL 173
+++QE NTA +RKAM ++A +TSVPQIWI+ +H+GGCDDLKAL+ TGDLG L+ +
Sbjct: 142 YIDQEPNTAEIRKAMTALAANRTSVPQIWINQKHVGGCDDLKALDKTGDLGVALEGI 198
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A4R6UHP6_9BURK (Glutaredoxin n=1 Tax=Tepidicella xavieri TaxID=360241 RepID=A0A4R6UHP6_9BURK) HSP 1 Score: 63.2 bits (152), Expect = 1.360e-11 Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 3
Query: 36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDL 152
+R AMA++AG+TSVPQI+IDG HIGGCDDL AL+A G+L
Sbjct: 41 VRAAMAALAGRTSVPQIFIDGRHIGGCDDLHALDARGEL 79
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A6N8XQ19_9PROT (Glutaredoxin n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N8XQ19_9PROT) HSP 1 Score: 62.4 bits (150), Expect = 2.870e-11 Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 3
Query: 36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKL 164
+R+AMA AG TSVPQIWIDG HIGGCD+L A++A G L L
Sbjct: 40 LRRAMAERAGATSVPQIWIDGRHIGGCDELHAMDAAGKLDPML 82
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A554WES8_9BURK (Glutaredoxin n=1 Tax=Tepidimonas aquatica TaxID=247482 RepID=A0A554WES8_9BURK) HSP 1 Score: 62.0 bits (149), Expect = 4.180e-11 Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 3
Query: 36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLK 167
+R+AMA + G+TSVPQI+IDG+HIGGCDDL AL+A G L L+
Sbjct: 41 VRQAMAQLVGRTSVPQIFIDGQHIGGCDDLHALDARGGLEPLLR 84
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A2G6KYS2_9GAMM (Glutaredoxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6KYS2_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 7.810e-11 Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 3
Query: 39 RKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKS 170
R MA+ AG+TSVPQIWI+ EHIGGCDDL ALE G L KL +
Sbjct: 41 RAEMAAKAGRTSVPQIWINKEHIGGCDDLMALERAGKLDIKLNA 84
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A285P8B8_9PSED (Glutaredoxin n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A285P8B8_9PSED) HSP 1 Score: 60.5 bits (145), Expect = 1.570e-10 Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 3
Query: 33 SMRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKL 164
++R MAS AG+TSVPQIWID H+GGCDDL ALE G L L
Sbjct: 39 ALRAEMASKAGRTSVPQIWIDDRHVGGCDDLYALERAGKLDALL 82
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A7U7EIZ2_9PSED (Glutaredoxin n=1 Tax=Pseudomonas carbonaria TaxID=2762745 RepID=A0A7U7EIZ2_9PSED) HSP 1 Score: 60.5 bits (145), Expect = 1.570e-10 Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 3
Query: 36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKS 170
+R MA AG+TSVPQIWI G H+GGCDDL ALE TG L L +
Sbjct: 40 LRAEMADKAGRTSVPQIWIGGTHVGGCDDLYALERTGKLDALLNA 84
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A1G9IRV6_9PSED (Glutaredoxin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A1G9IRV6_9PSED) HSP 1 Score: 60.5 bits (145), Expect = 1.730e-10 Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query: 36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKL 164
+R MA AG+TSVPQIWI+G HIGGCDDL ALE G L +L
Sbjct: 40 LRAEMARKAGRTSVPQIWINGAHIGGCDDLYALERAGKLDARL 82
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A554X4V6_9BURK (Glutaredoxin n=1 Tax=Tepidimonas thermarum TaxID=335431 RepID=A0A554X4V6_9BURK) HSP 1 Score: 60.5 bits (145), Expect = 1.730e-10 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 3
Query: 36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDL 152
+R+AMA AG+TSVPQI+IDG HIGGCDDL AL+A G L
Sbjct: 41 VRQAMAQRAGRTSVPQIFIDGRHIGGCDDLHALDARGGL 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85772.16160.1 >prot_H-elongata_contig85772.16160.1 ID=prot_H-elongata_contig85772.16160.1|Name=mRNA_H-elongata_contig85772.16160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp MLLWNRRLTRRACGRQWLVSRARRRSHRSGSMASTSAAAMISRLWRPRGTback to top mRNA from alignment at H-elongata_contig85772:318..762- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85772.16160.1 ID=mRNA_H-elongata_contig85772.16160.1|Name=mRNA_H-elongata_contig85772.16160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=445bp|location=Sequence derived from alignment at H-elongata_contig85772:318..762- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85772:318..762- >mRNA_H-elongata_contig85772.16160.1 ID=mRNA_H-elongata_contig85772.16160.1|Name=mRNA_H-elongata_contig85772.16160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig85772:318..762- (Himanthalia elongata Himel1 dioecious)back to top |