mRNA_H-elongata_contig85772.16160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85772.16160.1
Unique NamemRNA_H-elongata_contig85772.16160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A6H5JX55_9PHAE (Glutaredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX55_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.910e-15
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 FVEQEANTASMRKAMASIAG-KTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKSL 173
            +++QE NTA +RKAM ++A  +TSVPQIWI+ +H+GGCDDLKAL+ TGDLG  L+ +
Sbjct:  135 YIDQEPNTAEIRKAMTALAANRTSVPQIWINQKHVGGCDDLKALDKTGDLGVALEGI 191          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: D7G375_ECTSI (Glutaredoxin glutaredoxin/malate transporter fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G375_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.770e-15
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 FVEQEANTASMRKAMASIAG-KTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKSL 173
            +++QE NTA +RKAM ++A  +TSVPQIWI+ +H+GGCDDLKAL+ TGDLG  L+ +
Sbjct:  142 YIDQEPNTAEIRKAMTALAANRTSVPQIWINQKHVGGCDDLKALDKTGDLGVALEGI 198          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A4R6UHP6_9BURK (Glutaredoxin n=1 Tax=Tepidicella xavieri TaxID=360241 RepID=A0A4R6UHP6_9BURK)

HSP 1 Score: 63.2 bits (152), Expect = 1.360e-11
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 3
Query:   36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDL 152
            +R AMA++AG+TSVPQI+IDG HIGGCDDL AL+A G+L
Sbjct:   41 VRAAMAALAGRTSVPQIFIDGRHIGGCDDLHALDARGEL 79          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A6N8XQ19_9PROT (Glutaredoxin n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N8XQ19_9PROT)

HSP 1 Score: 62.4 bits (150), Expect = 2.870e-11
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 3
Query:   36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKL 164
            +R+AMA  AG TSVPQIWIDG HIGGCD+L A++A G L   L
Sbjct:   40 LRRAMAERAGATSVPQIWIDGRHIGGCDELHAMDAAGKLDPML 82          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A554WES8_9BURK (Glutaredoxin n=1 Tax=Tepidimonas aquatica TaxID=247482 RepID=A0A554WES8_9BURK)

HSP 1 Score: 62.0 bits (149), Expect = 4.180e-11
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 3
Query:   36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLK 167
            +R+AMA + G+TSVPQI+IDG+HIGGCDDL AL+A G L   L+
Sbjct:   41 VRQAMAQLVGRTSVPQIFIDGQHIGGCDDLHALDARGGLEPLLR 84          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A2G6KYS2_9GAMM (Glutaredoxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6KYS2_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 7.810e-11
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 3
Query:   39 RKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKS 170
            R  MA+ AG+TSVPQIWI+ EHIGGCDDL ALE  G L  KL +
Sbjct:   41 RAEMAAKAGRTSVPQIWINKEHIGGCDDLMALERAGKLDIKLNA 84          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A285P8B8_9PSED (Glutaredoxin n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A285P8B8_9PSED)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 3
Query:   33 SMRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKL 164
            ++R  MAS AG+TSVPQIWID  H+GGCDDL ALE  G L   L
Sbjct:   39 ALRAEMASKAGRTSVPQIWIDDRHVGGCDDLYALERAGKLDALL 82          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A7U7EIZ2_9PSED (Glutaredoxin n=1 Tax=Pseudomonas carbonaria TaxID=2762745 RepID=A0A7U7EIZ2_9PSED)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 3
Query:   36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKLKS 170
            +R  MA  AG+TSVPQIWI G H+GGCDDL ALE TG L   L +
Sbjct:   40 LRAEMADKAGRTSVPQIWIGGTHVGGCDDLYALERTGKLDALLNA 84          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A1G9IRV6_9PSED (Glutaredoxin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A1G9IRV6_9PSED)

HSP 1 Score: 60.5 bits (145), Expect = 1.730e-10
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query:   36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDLGTKL 164
            +R  MA  AG+TSVPQIWI+G HIGGCDDL ALE  G L  +L
Sbjct:   40 LRAEMARKAGRTSVPQIWINGAHIGGCDDLYALERAGKLDARL 82          
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Match: A0A554X4V6_9BURK (Glutaredoxin n=1 Tax=Tepidimonas thermarum TaxID=335431 RepID=A0A554X4V6_9BURK)

HSP 1 Score: 60.5 bits (145), Expect = 1.730e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 3
Query:   36 MRKAMASIAGKTSVPQIWIDGEHIGGCDDLKALEATGDL 152
            +R+AMA  AG+TSVPQI+IDG HIGGCDDL AL+A G L
Sbjct:   41 VRQAMAQRAGRTSVPQIFIDGRHIGGCDDLHALDARGGL 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85772.16160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX55_9PHAE2.910e-1559.65Glutaredoxin domain-containing protein n=1 Tax=Ect... [more]
D7G375_ECTSI8.770e-1559.65Glutaredoxin glutaredoxin/malate transporter fusio... [more]
A0A4R6UHP6_9BURK1.360e-1171.79Glutaredoxin n=1 Tax=Tepidicella xavieri TaxID=360... [more]
A0A6N8XQ19_9PROT2.870e-1165.12Glutaredoxin n=1 Tax=Rhodospirillaceae bacterium T... [more]
A0A554WES8_9BURK4.180e-1163.64Glutaredoxin n=1 Tax=Tepidimonas aquatica TaxID=24... [more]
A0A2G6KYS2_9GAMM7.810e-1165.91Glutaredoxin n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A285P8B8_9PSED1.570e-1063.64Glutaredoxin n=2 Tax=unclassified Pseudomonas TaxI... [more]
A0A7U7EIZ2_9PSED1.570e-1062.22Glutaredoxin n=1 Tax=Pseudomonas carbonaria TaxID=... [more]
A0A1G9IRV6_9PSED1.730e-1065.12Glutaredoxin n=2 Tax=Pseudomonas TaxID=286 RepID=A... [more]
A0A554X4V6_9BURK1.730e-1071.79Glutaredoxin n=1 Tax=Tepidimonas thermarum TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85772contigH-elongata_contig85772:318..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.8947237-CDS-H-elongata_contig85772:317..3901622931260.8947237-CDS-H-elongata_contig85772:317..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85772 318..390 -
1691679763.9719925-CDS-H-elongata_contig85772:317..3901691679763.9719925-CDS-H-elongata_contig85772:317..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85772 318..390 -
1622931260.9117296-CDS-H-elongata_contig85772:634..7621622931260.9117296-CDS-H-elongata_contig85772:634..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85772 635..762 -
1691679763.9817097-CDS-H-elongata_contig85772:634..7621691679763.9817097-CDS-H-elongata_contig85772:634..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85772 635..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85772.16160.1prot_H-elongata_contig85772.16160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85772 318..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85772.16160.1

>prot_H-elongata_contig85772.16160.1 ID=prot_H-elongata_contig85772.16160.1|Name=mRNA_H-elongata_contig85772.16160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MLLWNRRLTRRACGRQWLVSRARRRSHRSGSMASTSAAAMISRLWRPRGT
SGQSSSHCGRTQASKR*
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mRNA from alignment at H-elongata_contig85772:318..762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85772.16160.1 ID=mRNA_H-elongata_contig85772.16160.1|Name=mRNA_H-elongata_contig85772.16160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=445bp|location=Sequence derived from alignment at H-elongata_contig85772:318..762- (Himanthalia elongata Himel1 dioecious)
ATGCTTTTGTGGAACAGGAGGCTAACACGGCGAGCATGCGGAAGGCAATG GCTAGTATCGCGGGCAAGACGTCGGTCCCACAGATCTGGATCGATGGCGA GCACATCGGCGGCTGCGATGATCTCAAGGTACTACCGAGGATAGTGTGTT GGTCGCGGTACGGTATCCAACTACTGTGAACGAAAGACGGCTGTCTGCTG GAACCCGACGGGTCCGGGAAATAGAAAAAGGTTGTGGCCGCATCTGGAAT ATACAGCAAATTATTTCACGGCTATTTTCATCATACGCTCGAGAGAGAGA GAGAGAGAGAGAGAGGGAGGGAGAGAGAATAACGCATGAAAACACTCGCA TGTGCGTACTGATCGTGCACAGGCTTTGGAGGCCACGGGGGACCTCGGGA CAAAGCTCAAGTCACTGTGGAAGGACTCAAGCCTCGAAGCGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig85772:318..762-

>mRNA_H-elongata_contig85772.16160.1 ID=mRNA_H-elongata_contig85772.16160.1|Name=mRNA_H-elongata_contig85772.16160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig85772:318..762- (Himanthalia elongata Himel1 dioecious)
ATGCTTTTGTGGAACAGGAGGCTAACACGGCGAGCATGCGGAAGGCAATG
GCTAGTATCGCGGGCAAGACGTCGGTCCCACAGATCTGGATCGATGGCGA
GCACATCGGCGGCTGCGATGATCTCAAGATGCTTTTGTGGAACAGGAGGC
TAACACGGCGAGCATGCGGAAGGCAATGGCTAGTATCGCGGGCAAGACGT
CGGTCCCACAGATCTGGATCGATGGCGAGCACATCGGCGGCTGCGATGAT
CTCAAGGCTTTGGAGGCCACGGGGGACCTCGGGACAAAGCTCAAGTCACT
GTGGAAGGACTCAAGCCTCGAAGCGGTAGGCTTTGGAGGCCACGGGGGAC
CTCGGGACAAAGCTCAAGTCACTGTGGAAGGACTCAAGCCTCGAAGCGGT
AG
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