prot_H-elongata_contig85550.16141.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig85550.16141.1
Unique Nameprot_H-elongata_contig85550.16141.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length95
Homology
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BLAST of mRNA_H-elongata_contig85550.16141.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 8.870e-8
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:   24 PRPLTPAPHTNG----------MPPDMADVIALRSQLAELGMMAGFNTEPS 64
            PR LTP PH +G          MPPDMAD++ALRSQLAELG+MAGF   PS
Sbjct:  752 PRQLTPGPHASGGNATARGGADMPPDMADIVALRSQLAELGVMAGFLDPPS 802
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BLAST of mRNA_H-elongata_contig85550.16141.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.850e-6
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0 
Query:   24 PRPLTPAPHTNG--------------MPPDMADVIALRSQLAELGMMAGFNTEPSS 65
            PRPLTP PH +G              M PDMA+++ALRSQLAELG+MAGF  +PSS
Sbjct: 1397 PRPLTPGPHASGGXXXXXXXXXXXADMHPDMAEIVALRSQLAELGVMAGF-LDPSS 1451
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85550.16141.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI8.870e-860.78F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE3.850e-655.36F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..94
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85550contigH-elongata_contig85550:185..469 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85550.16141.1mRNA_H-elongata_contig85550.16141.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig85550 70..657 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig85550.16141.1 ID=prot_H-elongata_contig85550.16141.1|Name=mRNA_H-elongata_contig85550.16141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MSPVSSSAAAAATAAGAGSNHPPPRPLTPAPHTNGMPPDMADVIALRSQL
AELGMMAGFNTEPSSASPSLGGGRRGGALAGGTPALAFAERRVE*
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