mRNA_H-elongata_contig85550.16141.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85550.16141.1
Unique NamemRNA_H-elongata_contig85550.16141.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig85550.16141.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.640e-6
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  185 PRPLTPAPHTNG----------MPPDMADVIALRSQLAELGMMAGFNTEPS 307
            PR LTP PH +G          MPPDMAD++ALRSQLAELG+MAGF   PS
Sbjct:  752 PRQLTPGPHASGGNATARGGADMPPDMADIVALRSQLAELGVMAGFLDPPS 802
[Close]
BLAST of mRNA_H-elongata_contig85550.16141.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.620e-5
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 2 
Query:  185 PRPLTPAPHTNG--------------MPPDMADVIALRSQLAELGMMAGFNTEPSS 310
            PRPLTP PH +G              M PDMA+++ALRSQLAELG+MAGF  +PSS
Sbjct: 1397 PRPLTPGPHASGGXXXXXXXXXXXADMHPDMAEIVALRSQLAELGVMAGF-LDPSS 1451
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85550.16141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI1.640e-660.78F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE6.620e-555.36F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85550contigH-elongata_contig85550:70..657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85550.16141.1prot_H-elongata_contig85550.16141.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85550 185..469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.5211325-UTR-H-elongata_contig85550:69..1841622931258.5211325-UTR-H-elongata_contig85550:69..184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85550 70..184 +
1691679762.926699-UTR-H-elongata_contig85550:69..1841691679762.926699-UTR-H-elongata_contig85550:69..184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85550 70..184 +
1622931258.572054-UTR-H-elongata_contig85550:469..6571622931258.572054-UTR-H-elongata_contig85550:469..657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85550 470..657 +
1691679762.9485695-UTR-H-elongata_contig85550:469..6571691679762.9485695-UTR-H-elongata_contig85550:469..657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85550 470..657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.542149-CDS-H-elongata_contig85550:184..4691622931258.542149-CDS-H-elongata_contig85550:184..469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85550 185..469 +
1691679762.9386547-CDS-H-elongata_contig85550:184..4691691679762.9386547-CDS-H-elongata_contig85550:184..469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85550 185..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85550.16141.1

>prot_H-elongata_contig85550.16141.1 ID=prot_H-elongata_contig85550.16141.1|Name=mRNA_H-elongata_contig85550.16141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MSPVSSSAAAAATAAGAGSNHPPPRPLTPAPHTNGMPPDMADVIALRSQL
AELGMMAGFNTEPSSASPSLGGGRRGGALAGGTPALAFAERRVE*
back to top

mRNA from alignment at H-elongata_contig85550:70..657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85550.16141.1 ID=mRNA_H-elongata_contig85550.16141.1|Name=mRNA_H-elongata_contig85550.16141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig85550:70..657+ (Himanthalia elongata Himel1 dioecious)
GGGAAACATCGGCGTCGGGGGATTAGGTGTTAGCGGGGCCGCCGCGGGCG
TGGGTGTCGGTGGAATCGCGGGGAGGAACAGGCGACGTCCTCTTCAGTTC
CCTCCATCGTCGAGCATGTCGCCGGTTTCGTCTTCTGCTGCGGCGGCGGC
GACAGCGGCGGGGGCGGGCTCGAACCACCCGCCGCCGCGTCCCTTGACTC
CCGCGCCGCACACCAACGGCATGCCCCCCGACATGGCCGACGTGATCGCG
CTGAGGTCGCAGCTGGCCGAGCTCGGCATGATGGCGGGATTCAACACCGA
GCCGTCCTCCGCGTCGCCCTCTCTTGGAGGCGGTAGGCGAGGCGGCGCTT
TGGCGGGTGGAACTCCCGCGCTGGCGTTTGCCGAGAGGAGGGTCGAATGA
AGTCGAGCCGGGGGGGGTATCATTGGGGATGAGAAGGCAGCATAGGGCAG
GACTTGACCGCGGAGATTGAGGATATAAGAGAACCGTGGTCACAAACTAA
AAATCCCCAAAAAACACAAGATAAATAATTATGTCGTTGACCGCGGGGGG
ACTCGTGGGTGGGCGGGAATCACAAGCCGTACGCGCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig85550:70..657+

>mRNA_H-elongata_contig85550.16141.1 ID=mRNA_H-elongata_contig85550.16141.1|Name=mRNA_H-elongata_contig85550.16141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig85550:70..657+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCCGGTTTCGTCTTCTGCTGCGGCGGCGGCGACAGCGGCGGGGGC
GGGCTCGAACCACCCGCCGCCGCGTCCCTTGACTCCCGCGCCGCACACCA
ACGGCATGCCCCCCGACATGGCCGACGTGATCGCGCTGAGGTCGCAGCTG
GCCGAGCTCGGCATGATGGCGGGATTCAACACCGAGCCGTCCTCCGCGTC
GCCCTCTCTTGGAGGCGGTAGGCGAGGCGGCGCTTTGGCGGGTGGAACTC
CCGCGCTGGCGTTTGCCGAGAGGAGGGTCGAATGAATGTCGCCGGTTTCG
TCTTCTGCTGCGGCGGCGGCGACAGCGGCGGGGGCGGGCTCGAACCACCC
GCCGCCGCGTCCCTTGACTCCCGCGCCGCACACCAACGGCATGCCCCCCG
ACATGGCCGACGTGATCGCGCTGAGGTCGCAGCTGGCCGAGCTCGGCATG
ATGGCGGGATTCAACACCGAGCCGTCCTCCGCGTCGCCCTCTCTTGGAGG
CGGTAGGCGAGGCGGCGCTTTGGCGGGTGGAACTCCCGCGCTGGCGTTTG
CCGAGAGGAGGGTCGAATGA
back to top