mRNA_H-elongata_contig85345.16129.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: D7FV37_ECTSI (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV37_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.410e-17 Identity = 59/151 (39.07%), Postives = 72/151 (47.68%), Query Frame = 1
Query: 4 PHSSSPKRSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPT-LFGDGE-NRPINRVLSWVGWGLNRVAVGPR-----DVQTDMIFEKNL 435
P + A GVSRV+ECCLECGV LVF SSS V P E D A R L + S L+TCALRP ++G E + P++R LSWVGWGL+RVAVGP+ V+ DM+ NL
Sbjct: 38 PSPNDSDLQAFTAGVSRVIECCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEG-------------EDDMKARAVARAEARVLDASGATSPSRLHTCALRPAAFVYGTSEKDGPLHRALSWVGWGLDRVAVGPKCPEDGGVKVDMVHLDNL 175
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A6H5JET5_9PHAE (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET5_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 8.040e-16 Identity = 57/151 (37.75%), Postives = 70/151 (46.36%), Query Frame = 1
Query: 4 PHSSSPKRSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPT-LFGDGE-NRPINRVLSWVGWGLNRVAVGPR-----DVQTDMIFEKNL 435
P + A GVSRV++CCLECGV LVF SSS V P E D R L + S L+TCALRP ++G E + P++R L WVGWGLNRVAVGP+ V+ DM+ NL
Sbjct: 73 PSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEE-------------EDDVKARTVARAEARVLDASGATSPSHLHTCALRPAAFIYGLSEKDGPLHRALLWVGWGLNRVAVGPKCPEDGGVKVDMVHVDNL 210
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A833RIC9_9POAL (Short-chain dehydrogenase/reductase family 42E member 1 isoform X2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RIC9_9POAL) HSP 1 Score: 62.4 bits (150), Expect = 1.460e-8 Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 1
Query: 40 TGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
TG VL+ C E G+ LV++SS V + G E +P P P P + + K + N G+ YTCA+RP ++G GE + + R++S GL VG +V+TD I+ NLV
Sbjct: 109 TGTCNVLDSCRESGIRRLVYLSSYNV-VFGGKEILNGNETNPYYPIESNPDPFGRCECIAEQLVLKS--NGRPGKNQSGTHFYTCAVRPALVYGRGELKHLQRLVSLAKLGLLHFKVGGENVKTDWIYVDNLV 238
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A7J7P4P8_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P4P8_9MAGN) HSP 1 Score: 59.7 bits (143), Expect = 1.250e-7 Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 1
Query: 43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPL--PCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
G V++ CLE GV LV++S+ V + G E+ P P + + P + K SLS + + LYTC +RP T++G GE R + ++S GL R +G + V+TD ++ NLV
Sbjct: 80 GTCHVIDACLEYGVNRLVYVSTYNV-VYGGKEIVNGNEDLPCFPMDDHGIIDPYGRSKSIAEQLVLKSNASLSKKTD---TLLYTCVIRPATIYGPGEERYLPWIVSLAKLGLFRFKIGDKRVKTDWVYLDNLV 209
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: UPI00070401BE (putative short-chain dehydrogenase/reductase family 42E member 2 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=UPI00070401BE) HSP 1 Score: 59.3 bits (142), Expect = 1.640e-7 Identity = 39/132 (29.55%), Postives = 61/132 (46.21%), Query Frame = 1
Query: 43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
G V++ C E + L++ S+ V G NP + LP F + + D+ L + +GT GG L+TC LRPP ++G GE R + RV+ + GL + G Q + + KNL+
Sbjct: 123 GTKVVIDVCKERNIPRLIYTSTVNVVF----GGNPIEDGDETLPYFPLEKQVNHYSRTKAMADQMILAA-NGTPLKGGEKLHTCVLRPPGIYGPGEQRHLPRVVKNIQRGLFNIHFGNPKSQMNWVHVKNLI 249
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A087HIW2_ARAAL (3Beta_HSD domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HIW2_ARAAL) HSP 1 Score: 58.2 bits (139), Expect = 3.960e-7 Identity = 38/133 (28.57%), Postives = 65/133 (48.87%), Query Frame = 1
Query: 43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLG-GSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
G VLE C++ G+ +V++SS+ V G LP + +D+ S ++ L S T+ G G+ L TC +R P ++G GE + ++R++S GL +G + +TD I+ N+V
Sbjct: 110 GTRNVLETCVKKGITKVVYLSSNGVVF----GGKEIENGDETLPYLASNQYVGPYDWTKSIAEQLVLKSNGRTIENGHGNILSTCVIRCPLVYGPGEEKYLDRIISDARLGLFLFKIGDPNSKTDWIYVDNIV 238
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A565B3Y0_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B3Y0_9BRAS) HSP 1 Score: 58.2 bits (139), Expect = 4.640e-7 Identity = 39/133 (29.32%), Postives = 66/133 (49.62%), Query Frame = 1
Query: 43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLG-GSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
G VLE C++ G+ LV++SS+ V G LP + + +D S ++ L + T++ G GS L TC +R P ++G GE + ++R++S GL +G + +TD I+ N+V
Sbjct: 110 GTRNVLETCVKKGITRLVYLSSNGVVF----GGKEIENGDETLPYLASNQYVSPYDRTKSIAEQLVLKNNGRTIDNGHGSILSTCVIRCPLVYGPGEEKYLDRIISDARLGLFLFKIGDPNSKTDWIYVDNIV 238
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: V4KCL0_EUTSA (3Beta_HSD domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KCL0_EUTSA) HSP 1 Score: 57.8 bits (138), Expect = 5.940e-7 Identity = 40/133 (30.08%), Postives = 69/133 (51.88%), Query Frame = 1
Query: 43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLG-GSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
G V+E C++ G+ +V++SS+ V + G E P L + P +D S ++ L + T+ G GS L TCA+R P ++G GE + ++R++S GL +G + +TD+I+ N+V
Sbjct: 110 GTRNVMEACVKKGIRRVVYLSSNGV-VFSGKEIMNGDETLPYLASNQYVCP---YDQFKSTAEQLVLKNNGRTVENGHGSLLSTCAIRCPLVYGPGEEKYLDRIISDARLGLLLFKIGDPNSKTDLIYVDNIV 238
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A816HIG3_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816HIG3_ADIRI) HSP 1 Score: 55.5 bits (132), Expect = 2.020e-6 Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query: 40 TGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
TG V++ C++ G+ LV+ S+ A +E ++ + PC+ D+ + + R + + L S LYT A+RP ++GDGE R + R+L+ V GL AVG +V D I+ NLV
Sbjct: 9 TGTENVIKACVKHGIRKLVYCSTYN------AVYTGKKELRGVI-EAQCSYPCSN-DYYDN-YSRTKSLAEQMVLKSASSDLYTAAIRPAAIYGDGELRHLPRILNLVRQGLAFFAVGHENVLCDWIYADNLV 132
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A6J0U3A5_9SAUR (putative short-chain dehydrogenase/reductase family 42E member 2 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0U3A5_9SAUR) HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5 Identity = 42/138 (30.43%), Postives = 62/138 (44.93%), Query Frame = 1
Query: 25 RSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
RS G VLE C + + L++ SS V AG + +P F +E+ S ++ L + +GT GG LYTCALRPP ++G E R + R+ + GL +G + + KNLV
Sbjct: 123 RSTNVGGTGVVLEVCKQRSIPRLIYTSSVNVVF---AGQTIIDGDEATVPYFPLDKHVSEYSRTKSIAEQMVLAA-NGTPLAGGGVLYTCALRPPGIYGPEEQRHLPRLALNIQRGLFAFRIGDPKAVMNWVHVKNLV 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85345.16129.1 >prot_H-elongata_contig85345.16129.1 ID=prot_H-elongata_contig85345.16129.1|Name=mRNA_H-elongata_contig85345.16129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp LPHSSSPKRSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPAback to top mRNA from alignment at H-elongata_contig85345:1352..2354+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85345.16129.1 ID=mRNA_H-elongata_contig85345.16129.1|Name=mRNA_H-elongata_contig85345.16129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-elongata_contig85345:1352..2354+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85345:1352..2354+ >mRNA_H-elongata_contig85345.16129.1 ID=mRNA_H-elongata_contig85345.16129.1|Name=mRNA_H-elongata_contig85345.16129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig85345:1352..2354+ (Himanthalia elongata Himel1 dioecious)back to top |