mRNA_H-elongata_contig85345.16129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85345.16129.1
Unique NamemRNA_H-elongata_contig85345.16129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: D7FV37_ECTSI (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV37_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.410e-17
Identity = 59/151 (39.07%), Postives = 72/151 (47.68%), Query Frame = 1
Query:    4 PHSSSPKRSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPT-LFGDGE-NRPINRVLSWVGWGLNRVAVGPR-----DVQTDMIFEKNL 435
            P  +     A   GVSRV+ECCLECGV  LVF SSS V         P                  E D    A  R     L  +     S L+TCALRP   ++G  E + P++R LSWVGWGL+RVAVGP+      V+ DM+   NL
Sbjct:   38 PSPNDSDLQAFTAGVSRVIECCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEG-------------EDDMKARAVARAEARVLDASGATSPSRLHTCALRPAAFVYGTSEKDGPLHRALSWVGWGLDRVAVGPKCPEDGGVKVDMVHLDNL 175          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A6H5JET5_9PHAE (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.040e-16
Identity = 57/151 (37.75%), Postives = 70/151 (46.36%), Query Frame = 1
Query:    4 PHSSSPKRSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPT-LFGDGE-NRPINRVLSWVGWGLNRVAVGPR-----DVQTDMIFEKNL 435
            P  +     A   GVSRV++CCLECGV  LVF SSS V         P                  E D       R     L  +     S L+TCALRP   ++G  E + P++R L WVGWGLNRVAVGP+      V+ DM+   NL
Sbjct:   73 PSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEE-------------EDDVKARTVARAEARVLDASGATSPSHLHTCALRPAAFIYGLSEKDGPLHRALLWVGWGLNRVAVGPKCPEDGGVKVDMVHVDNL 210          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A833RIC9_9POAL (Short-chain dehydrogenase/reductase family 42E member 1 isoform X2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RIC9_9POAL)

HSP 1 Score: 62.4 bits (150), Expect = 1.460e-8
Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 1
Query:   40 TGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            TG   VL+ C E G+  LV++SS  V +  G       E +P  P    P P    + +      K   +     N  G+  YTCA+RP  ++G GE + + R++S    GL    VG  +V+TD I+  NLV
Sbjct:  109 TGTCNVLDSCRESGIRRLVYLSSYNV-VFGGKEILNGNETNPYYPIESNPDPFGRCECIAEQLVLKS--NGRPGKNQSGTHFYTCAVRPALVYGRGELKHLQRLVSLAKLGLLHFKVGGENVKTDWIYVDNLV 238          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A7J7P4P8_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P4P8_9MAGN)

HSP 1 Score: 59.7 bits (143), Expect = 1.250e-7
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPL--PCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            G   V++ CLE GV  LV++S+  V +  G       E+ P  P  +  +  P      +      K   SLS   +   + LYTC +RP T++G GE R +  ++S    GL R  +G + V+TD ++  NLV
Sbjct:   80 GTCHVIDACLEYGVNRLVYVSTYNV-VYGGKEIVNGNEDLPCFPMDDHGIIDPYGRSKSIAEQLVLKSNASLSKKTD---TLLYTCVIRPATIYGPGEERYLPWIVSLAKLGLFRFKIGDKRVKTDWVYLDNLV 209          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: UPI00070401BE (putative short-chain dehydrogenase/reductase family 42E member 2 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=UPI00070401BE)

HSP 1 Score: 59.3 bits (142), Expect = 1.640e-7
Identity = 39/132 (29.55%), Postives = 61/132 (46.21%), Query Frame = 1
Query:   43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            G   V++ C E  +  L++ S+  V      G NP  +    LP F        +    +  D+  L + +GT   GG  L+TC LRPP ++G GE R + RV+  +  GL  +  G    Q + +  KNL+
Sbjct:  123 GTKVVIDVCKERNIPRLIYTSTVNVVF----GGNPIEDGDETLPYFPLEKQVNHYSRTKAMADQMILAA-NGTPLKGGEKLHTCVLRPPGIYGPGEQRHLPRVVKNIQRGLFNIHFGNPKSQMNWVHVKNLI 249          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A087HIW2_ARAAL (3Beta_HSD domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HIW2_ARAAL)

HSP 1 Score: 58.2 bits (139), Expect = 3.960e-7
Identity = 38/133 (28.57%), Postives = 65/133 (48.87%), Query Frame = 1
Query:   43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLG-GSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            G   VLE C++ G+  +V++SS+ V      G          LP   +      +D+  S  ++  L S   T+  G G+ L TC +R P ++G GE + ++R++S    GL    +G  + +TD I+  N+V
Sbjct:  110 GTRNVLETCVKKGITKVVYLSSNGVVF----GGKEIENGDETLPYLASNQYVGPYDWTKSIAEQLVLKSNGRTIENGHGNILSTCVIRCPLVYGPGEEKYLDRIISDARLGLFLFKIGDPNSKTDWIYVDNIV 238          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A565B3Y0_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B3Y0_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 4.640e-7
Identity = 39/133 (29.32%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLG-GSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            G   VLE C++ G+  LV++SS+ V      G          LP   +    + +D   S  ++  L +   T++ G GS L TC +R P ++G GE + ++R++S    GL    +G  + +TD I+  N+V
Sbjct:  110 GTRNVLETCVKKGITRLVYLSSNGVVF----GGKEIENGDETLPYLASNQYVSPYDRTKSIAEQLVLKNNGRTIDNGHGSILSTCVIRCPLVYGPGEEKYLDRIISDARLGLFLFKIGDPNSKTDWIYVDNIV 238          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: V4KCL0_EUTSA (3Beta_HSD domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KCL0_EUTSA)

HSP 1 Score: 57.8 bits (138), Expect = 5.940e-7
Identity = 40/133 (30.08%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   43 GVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLG-GSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            G   V+E C++ G+  +V++SS+ V +  G       E  P L   +   P   +D   S  ++  L +   T+  G GS L TCA+R P ++G GE + ++R++S    GL    +G  + +TD+I+  N+V
Sbjct:  110 GTRNVMEACVKKGIRRVVYLSSNGV-VFSGKEIMNGDETLPYLASNQYVCP---YDQFKSTAEQLVLKNNGRTVENGHGSLLSTCAIRCPLVYGPGEEKYLDRIISDARLGLLLFKIGDPNSKTDLIYVDNIV 238          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A816HIG3_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816HIG3_ADIRI)

HSP 1 Score: 55.5 bits (132), Expect = 2.020e-6
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   40 TGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            TG   V++ C++ G+  LV+ S+        A     +E   ++   +   PC+  D+  + + R +  +    L    S LYT A+RP  ++GDGE R + R+L+ V  GL   AVG  +V  D I+  NLV
Sbjct:    9 TGTENVIKACVKHGIRKLVYCSTYN------AVYTGKKELRGVI-EAQCSYPCSN-DYYDN-YSRTKSLAEQMVLKSASSDLYTAAIRPAAIYGDGELRHLPRILNLVRQGLAFFAVGHENVLCDWIYADNLV 132          
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Match: A0A6J0U3A5_9SAUR (putative short-chain dehydrogenase/reductase family 42E member 2 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0U3A5_9SAUR)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5
Identity = 42/138 (30.43%), Postives = 62/138 (44.93%), Query Frame = 1
Query:   25 RSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPARENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCALRPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV 438
            RS    G   VLE C +  +  L++ SS  V     AG      +   +P F      +E+    S  ++  L + +GT   GG  LYTCALRPP ++G  E R + R+   +  GL    +G      + +  KNLV
Sbjct:  123 RSTNVGGTGVVLEVCKQRSIPRLIYTSSVNVVF---AGQTIIDGDEATVPYFPLDKHVSEYSRTKSIAEQMVLAA-NGTPLAGGGVLYTCALRPPGIYGPEEQRHLPRLALNIQRGLFAFRIGDPKAVMNWVHVKNLV 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85345.16129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FV37_ECTSI2.410e-1739.073Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JET5_9PHAE8.040e-1637.753Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
A0A833RIC9_9POAL1.460e-832.33Short-chain dehydrogenase/reductase family 42E mem... [more]
A0A7J7P4P8_9MAGN1.250e-731.34Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
UPI00070401BE1.640e-729.55putative short-chain dehydrogenase/reductase famil... [more]
A0A087HIW2_ARAAL3.960e-728.573Beta_HSD domain-containing protein n=1 Tax=Arabis... [more]
A0A565B3Y0_9BRAS4.640e-729.32Uncharacterized protein n=1 Tax=Arabis nemorensis ... [more]
V4KCL0_EUTSA5.940e-730.083Beta_HSD domain-containing protein n=1 Tax=Eutrem... [more]
A0A816HIG3_ADIRI2.020e-630.83Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
A0A6J0U3A5_9SAUR1.260e-530.43putative short-chain dehydrogenase/reductase famil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85345contigH-elongata_contig85345:1352..2354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue3.5e-15
Seed eggNOG ortholog2880.D7FV37
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
EggNOG OGsCOG0451@1,KOG1430@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85345.16129.1prot_H-elongata_contig85345.16129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85345 1352..2354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931257.3990796-CDS-H-elongata_contig85345:1351..15191622931257.3990796-CDS-H-elongata_contig85345:1351..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85345 1352..1519 +
1691679762.4940076-CDS-H-elongata_contig85345:1351..15191691679762.4940076-CDS-H-elongata_contig85345:1351..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85345 1352..1519 +
1622931257.4159832-CDS-H-elongata_contig85345:1797..19641622931257.4159832-CDS-H-elongata_contig85345:1797..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85345 1798..1964 +
1691679762.5071425-CDS-H-elongata_contig85345:1797..19641691679762.5071425-CDS-H-elongata_contig85345:1797..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85345 1798..1964 +
1622931257.4322839-CDS-H-elongata_contig85345:2251..23541622931257.4322839-CDS-H-elongata_contig85345:2251..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85345 2252..2354 +
1691679762.5160096-CDS-H-elongata_contig85345:2251..23541691679762.5160096-CDS-H-elongata_contig85345:2251..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85345 2252..2354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85345.16129.1

>prot_H-elongata_contig85345.16129.1 ID=prot_H-elongata_contig85345.16129.1|Name=mRNA_H-elongata_contig85345.16129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
LPHSSSPKRSALRTGVSRVLECCLECGVGSLVFMSSSRVGLIPGAGANPA
RENSPLLPRFETPLPCAEFDFLPSAFDRKRLPSLSGTLNLGGSCLYTCAL
RPPTLFGDGENRPINRVLSWVGWGLNRVAVGPRDVQTDMIFEKNLV
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mRNA from alignment at H-elongata_contig85345:1352..2354+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85345.16129.1 ID=mRNA_H-elongata_contig85345.16129.1|Name=mRNA_H-elongata_contig85345.16129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-elongata_contig85345:1352..2354+ (Himanthalia elongata Himel1 dioecious)
TTACCCCACTCTTCCTCCCCCAAACGTTCGGCTTTGAGGACAGGCGTCAG CAGAGTCCTAGAATGCTGCCTGGAGTGCGGCGTCGGCAGCCTGGTCTTCA TGAGCTCCTCGCGGGTCGGGTTGATACCAGGAGCAGGGGCAAACCCCGCC CGCGAGAACTCTCCTCTCGTTACCCCGAAGGGTGACGAAATTGCCTACGC GATCGCCATGGCCGAGGCGGAGGTGCTGCAAGCCAGGCGAGCGCATTTCT ACTCCACATTTAATCGTTTTTTGCACCATTTAATCGTTTTTTGGCACCGG GGATGAAAAGCCGGGTGTTTGATTTTTGGTGGGCCACAACAGCACTCACT ACACTACTTTGGGCCGCACGGCGGCATAACATTCCGTCTCTGGAAGCATC ATGGATGGGCTCGTGGTGACGTGTGTGACGTGTGACGCGATTCAAGCTCC CCCGCTTCGAGACCCCACTCCCTTGTGCTGAATTTGATTTTCTGCCTTCC GCCTTCGATCGCAAACGGCTTCCCTCTCTCAGCGGGACGCTGAACCTCGG CGGTTCCTGTTTGTACACCTGCGCTTTGCGTCCCCCCACCTTGTTCGGAG ATGGGGAAAACAGGTGGGCTGTTCACGTGTGTAATCGAATGCTCACTCTC CGACCTACGACAATGATCGAGCTGTAATGTTTCGAGCGATTATAAGGACG TGGAGTACTTAGTGGTATGGAAGTCCTCCCTTCGCGGTGGCGTTCCATTC AAGACACCGATCCGCCGTTTCATACACACCAAGTACCAGACCCACGTTTT TTCGTACACGATCTCATTCGCTGTAGATGTTTAGAAACGTCGTTGTTCCA AGCTGATCACTCCGAGATGTGCCTGATATGTCTGCGTCGCCCCCGTCCAG GCCGATCAATCGCGTGCTGTCATGGGTGGGTTGGGGACTGAACCGCGTTG CGGTGGGCCCGAGGGACGTGCAGACGGACATGATCTTCGAAAAAAACCTG GTG
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Coding sequence (CDS) from alignment at H-elongata_contig85345:1352..2354+

>mRNA_H-elongata_contig85345.16129.1 ID=mRNA_H-elongata_contig85345.16129.1|Name=mRNA_H-elongata_contig85345.16129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig85345:1352..2354+ (Himanthalia elongata Himel1 dioecious)
TTACCCCACTCTTCCTCCCCCAAACGTTCGGCTTTGAGGACAGGCGTCAG
CAGAGTCCTAGAATGCTGCCTGGAGTGCGGCGTCGGCAGCCTGGTCTTCA
TGAGCTCCTCGCGGGTCGGGTTGATACCAGGAGCAGGGGCAAACCCCGCC
CGCGAGAACTCTCCTCTCTTACCCCACTCTTCCTCCCCCAAACGTTCGGC
TTTGAGGACAGGCGTCAGCAGAGTCCTAGAATGCTGCCTGGAGTGCGGCG
TCGGCAGCCTGGTCTTCATGAGCTCCTCGCGGGTCGGGTTGATACCAGGA
GCAGGGGCAAACCCCGCCCGCGAGAACTCTCCTCTCCTCCCCCGCTTCGA
GACCCCACTCCCTTGTGCTGAATTTGATTTTCTGCCTTCCGCCTTCGATC
GCAAACGGCTTCCCTCTCTCAGCGGGACGCTGAACCTCGGCGGTTCCTGT
TTGTACACCTGCGCTTTGCGTCCCCCCACCTTGTTCGGAGATGGGGAAAA
CAGCTCCCCCGCTTCGAGACCCCACTCCCTTGTGCTGAATTTGATTTTCT
GCCTTCCGCCTTCGATCGCAAACGGCTTCCCTCTCTCAGCGGGACGCTGA
ACCTCGGCGGTTCCTGTTTGTACACCTGCGCTTTGCGTCCCCCCACCTTG
TTCGGAGATGGGGAAAACAGGCCGATCAATCGCGTGCTGTCATGGGTGGG
TTGGGGACTGAACCGCGTTGCGGTGGGCCCGAGGGACGTGCAGACGGACA
TGATCTTCGAAAAAAACCTGGTGGCCGATCAATCGCGTGCTGTCATGGGT
GGGTTGGGGACTGAACCGCGTTGCGGTGGGCCCGAGGGACGTGCAGACGG
ACATGATCTTCGAAAAAAACCTGGTG
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