mRNA_H-elongata_contig85305.16127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85305.16127.1
Unique NamemRNA_H-elongata_contig85305.16127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85305.16127.1 vs. uniprot
Match: D7FHH0_ECTSI (DUF6314 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHH0_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.330e-65
Identity = 127/221 (57.47%), Postives = 147/221 (66.52%), Query Frame = 1 
Query:  271 ASLCLETAADVYRYLCGRWDLKKSIDYKVGGMAGTWDGVAAFSPEQQRP-----EEAEGQFHHYGKESSALGLDRELDNGSRV-LRYLERGVFKINGVGEGFQAGQRLVYDCGNRSGPV-RVHFVDDPKKPNALRFFHELDFRTTSSASAASTIGAAFRNGRGGKSDGAEEGGGVKRCLGGDEVNPTASWSPRAEFEHLCVRDLYRGEVEVLGPNEFRTRW 912
            ASL L+T A VYRYL GRW L+K+IDYK GGMAGTW GVA FSP+QQ+       + EG+ +H G      G D E+D+ S + LRY E+G F++NG G GF+AGQRLVYDC   SGPV RVHFVDDPKKP+ALRFFHELDF+T S      T GA    G GG      E GG      G    P     PRAEFEHLCVRD+YRG+VEV GPNEF+T W
Sbjct:   28 ASLGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNTKEEGEQNHDGD-----GQD-EMDHSSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDC---SGPVVRVHFVDDPKKPDALRFFHELDFQTASPYET--TAGA----GTGG------EAGGTGVAAAGASFAPPP---PRAEFEHLCVRDMYRGKVEVAGPNEFKTSW 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85305.16127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHH0_ECTSI1.330e-6557.47DUF6314 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85305contigH-elongata_contig85305:1030..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue2.3e-53
Seed eggNOG ortholog2880.D7FHH0
EggNOG OGs2E4H1@1,2SG7J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002440.1
Exons2
Model size912
Cds size912
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931257.2747343-CDS-H-elongata_contig85305:1029..14731622931257.2747343-CDS-H-elongata_contig85305:1029..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85305 1030..1473 +
1691679762.4439003-CDS-H-elongata_contig85305:1029..14731691679762.4439003-CDS-H-elongata_contig85305:1029..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85305 1030..1473 +
1622931257.2983167-CDS-H-elongata_contig85305:1545..20131622931257.2983167-CDS-H-elongata_contig85305:1545..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85305 1546..2013 +
1691679762.4633365-CDS-H-elongata_contig85305:1545..20131691679762.4633365-CDS-H-elongata_contig85305:1545..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85305 1546..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85305.16127.1prot_H-elongata_contig85305.16127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85305 1030..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85305.16127.1

>prot_H-elongata_contig85305.16127.1 ID=prot_H-elongata_contig85305.16127.1|Name=mRNA_H-elongata_contig85305.16127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
MTPRAKLLAVAFCGYLNPALRLRRTSTIHNIFHHLEGSLASVSTFEKLLH
SLRSKNLPLQSSSPWMIAPSSTTARACTGETAPTTAGVSGASLCLETAAD
VYRYLCGRWDLKKSIDYKVGGMAGTWDGVAAFSPEQQRPEEAEGQFHHYG
KESSALGLDRELDNGSRVLRYLERGVFKINGVGEGFQAGQRLVYDCGNRS
GPVRVHFVDDPKKPNALRFFHELDFRTTSSASAASTIGAAFRNGRGGKSD
GAEEGGGVKRCLGGDEVNPTASWSPRAEFEHLCVRDLYRGEVEVLGPNEF
RTRW
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mRNA from alignment at H-elongata_contig85305:1030..2013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85305.16127.1 ID=mRNA_H-elongata_contig85305.16127.1|Name=mRNA_H-elongata_contig85305.16127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=984bp|location=Sequence derived from alignment at H-elongata_contig85305:1030..2013+ (Himanthalia elongata Himel1 dioecious)
ATGACACCTCGAGCAAAGCTGCTTGCCGTGGCCTTCTGCGGTTACCTGAA
TCCAGCGCTGCGGTTACGAAGGACTTCGACGATCCATAATATTTTCCACC
ACCTTGAAGGCTCTTTGGCGTCTGTTTCCACTTTTGAGAAGCTTCTGCAC
TCCCTTCGAAGCAAGAACTTGCCTCTGCAGTCATCGTCGCCGTGGATGAT
TGCGCCGTCCTCGACAACCGCTCGTGCCTGCACCGGTGAGACGGCTCCAA
CTACAGCCGGGGTCAGCGGGGCTTCATTATGTCTCGAGACTGCCGCCGAC
GTGTATCGATATCTCTGCGGCCGCTGGGATCTCAAGAAGAGTATCGATTA
CAAGGTCGGTGGCATGGCGGGGACGTGGGACGGAGTCGCCGCCTTCTCTC
CAGAGCAGCAACGGCCCGAAGAAGCAGAGGGCCAATTTCATCATGTCCCC
GCTTCCACTGCCAGCACTGCCTCAGAGAGCGAAGGCTTTCCCGAGCAGCA
AGGAGGAGCAGCGGAGTACGGTAAAGAATCTTCGGCTTTGGGGTTGGATC
GCGAGCTTGACAATGGGTCACGCGTTCTGCGTTACCTCGAGCGAGGGGTA
TTCAAGATCAACGGAGTAGGCGAAGGCTTCCAGGCGGGTCAGAGACTGGT
GTACGACTGCGGTAACCGGTCGGGGCCGGTGCGGGTCCACTTCGTTGACG
ACCCCAAGAAGCCAAACGCGCTGCGCTTTTTCCACGAGCTTGACTTTCGG
ACGACGTCTAGCGCATCAGCAGCGTCGACGATTGGTGCTGCGTTTCGTAA
TGGCCGAGGAGGAAAATCGGACGGCGCGGAGGAAGGGGGCGGCGTTAAAC
GATGTCTGGGCGGGGACGAAGTGAACCCGACCGCGAGCTGGAGTCCTCGA
GCCGAGTTCGAGCATCTGTGCGTGCGAGACTTATACAGAGGGGAGGTAGA
GGTGCTAGGTCCGAACGAGTTCAGGACGCGGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig85305:1030..2013+

>mRNA_H-elongata_contig85305.16127.1 ID=mRNA_H-elongata_contig85305.16127.1|Name=mRNA_H-elongata_contig85305.16127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig85305:1030..2013+ (Himanthalia elongata Himel1 dioecious)
ATGACACCTCGAGCAAAGCTGCTTGCCGTGGCCTTCTGCGGTTACCTGAA
TCCAGCGCTGCGGTTACGAAGGACTTCGACGATCCATAATATTTTCCACC
ACCTTGAAGGCTCTTTGGCGTCTGTTTCCACTTTTGAGAAGCTTCTGCAC
TCCCTTCGAAGCAAGAACTTGCCTCTGCAGTCATCGTCGCCGTGGATGAT
TGCGCCGTCCTCGACAACCGCTCGTGCCTGCACCGGTGAGACGGCTCCAA
CTACAGCCGGGGTCAGCGGGGCTTCATTATGTCTCGAGACTGCCGCCGAC
GTGTATCGATATCTCTGCGGCCGCTGGGATCTCAAGAAGAGTATCGATTA
CAAGGTCGGTGGCATGGCGGGGACGTGGGACGGAGTCGCCGCCTTCTCTC
CAGAGCAGCAACGGCCCGAAGAAGCAGAGGGCCAATTTCATCATATGACA
CCTCGAGCAAAGCTGCTTGCCGTGGCCTTCTGCGGTTACCTGAATCCAGC
GCTGCGGTTACGAAGGACTTCGACGATCCATAATATTTTCCACCACCTTG
AAGGCTCTTTGGCGTCTGTTTCCACTTTTGAGAAGCTTCTGCACTCCCTT
CGAAGCAAGAACTTGCCTCTGCAGTCATCGTCGCCGTGGATGATTGCGCC
GTCCTCGACAACCGCTCGTGCCTGCACCGGTGAGACGGCTCCAACTACAG
CCGGGGTCAGCGGGGCTTCATTATGTCTCGAGACTGCCGCCGACGTGTAT
CGATATCTCTGCGGCCGCTGGGATCTCAAGAAGAGTATCGATTACAAGGT
CGGTGGCATGGCGGGGACGTGGGACGGAGTCGCCGCCTTCTCTCCAGAGC
AGCAACGGCCCGAAGAAGCAGAGGGCCAATTTCATCATTACGGTAAAGAA
TCTTCGGCTTTGGGGTTGGATCGCGAGCTTGACAATGGGTCACGCGTTCT
GCGTTACCTCGAGCGAGGGGTATTCAAGATCAACGGAGTAGGCGAAGGCT
TCCAGGCGGGTCAGAGACTGGTGTACGACTGCGGTAACCGGTCGGGGCCG
GTGCGGGTCCACTTCGTTGACGACCCCAAGAAGCCAAACGCGCTGCGCTT
TTTCCACGAGCTTGACTTTCGGACGACGTCTAGCGCATCAGCAGCGTCGA
CGATTGGTGCTGCGTTTCGTAATGGCCGAGGAGGAAAATCGGACGGCGCG
GAGGAAGGGGGCGGCGTTAAACGATGTCTGGGCGGGGACGAAGTGAACCC
GACCGCGAGCTGGAGTCCTCGAGCCGAGTTCGAGCATCTGTGCGTGCGAG
ACTTATACAGAGGGGAGGTAGAGGTGCTAGGTCCGAACGAGTTCAGGACG
CGGTGGTACGGTAAAGAATCTTCGGCTTTGGGGTTGGATCGCGAGCTTGA
CAATGGGTCACGCGTTCTGCGTTACCTCGAGCGAGGGGTATTCAAGATCA
ACGGAGTAGGCGAAGGCTTCCAGGCGGGTCAGAGACTGGTGTACGACTGC
GGTAACCGGTCGGGGCCGGTGCGGGTCCACTTCGTTGACGACCCCAAGAA
GCCAAACGCGCTGCGCTTTTTCCACGAGCTTGACTTTCGGACGACGTCTA
GCGCATCAGCAGCGTCGACGATTGGTGCTGCGTTTCGTAATGGCCGAGGA
GGAAAATCGGACGGCGCGGAGGAAGGGGGCGGCGTTAAACGATGTCTGGG
CGGGGACGAAGTGAACCCGACCGCGAGCTGGAGTCCTCGAGCCGAGTTCG
AGCATCTGTGCGTGCGAGACTTATACAGAGGGGAGGTAGAGGTGCTAGGT
CCGAACGAGTTCAGGACGCGGTGG
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