mRNA_H-elongata_contig85214.16110.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85214.16110.1
Unique NamemRNA_H-elongata_contig85214.16110.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: D7G7J8_ECTSI (Nucleolar complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.130e-25
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    1 ELRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKA 198
            ELRMLIFPL+QVI G++RL  TLRHSPL+FQLVRMRQRLAAA E+YVPC+ PLLEV+RSPALFKKA
Sbjct:  631 ELRMLIFPLAQVIEGIVRLSATLRHSPLVFQLVRMRQRLAAAAELYVPCATPLLEVIRSPALFKKA 696          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: A0A3M7NF59_9EURO (Uncharacterized protein (Fragment) n=2 Tax=unclassified Chaetothyriales TaxID=316340 RepID=A0A3M7NF59_9EURO)

HSP 1 Score: 64.7 bits (156), Expect = 2.180e-10
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 ELRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHL 213
            +LR LI+PL+QV  GV+RL PT  + PL F L+R   R++ AT  Y+P S  LLEVL SP L + A+ A L
Sbjct:  471 QLRPLIYPLTQVTLGVMRLIPTSTYFPLRFLLIRSLLRISNATGTYIPLSSALLEVLNSPELKRPAKPATL 541          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: R7YZE9_CONA1 (Uncharacterized protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YZE9_CONA1)

HSP 1 Score: 62.8 bits (151), Expect = 1.040e-9
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 ELRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            ELR L++P++QV  G +RL PT ++ PL FQLVR   RL+ AT VY+P +  LLEVL S  + K  + + L+
Sbjct:  503 ELRPLVYPVTQVTLGAMRLIPTAQYFPLRFQLVRSLLRLSRATGVYIPLAPALLEVLSSAEMKKSPKPSTLK 574          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: A0A6A6CA99_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CA99_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 9.290e-9
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 LRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            LR LI+PL+QV  G LRL PT  + PL FQL+R   R++ AT  Y+P + PL EVL S  + K  + + L+
Sbjct:  482 LRPLIYPLTQVTLGALRLIPTATYFPLRFQLIRSLLRVSLATNTYIPLAAPLHEVLNSAEMRKAPKASTLK 552          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: UPI000CE1FF21 (nucleolar complex protein 2-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1FF21)

HSP 1 Score: 59.7 bits (143), Expect = 1.270e-8
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    4 LRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            L  LI+PL+QV  G LRL PT  + PL FQL R   R++ AT  Y+P + PL EVL S  + K  + A L+
Sbjct:  490 LHPLIYPLTQVTLGALRLIPTATYFPLRFQLTRSLLRMSLATNTYIPLAAPLYEVLNSSEMRKAPKAASLK 560          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: UPI000CE17DDE (uncharacterized NOC2 family protein C1142.04-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE17DDE)

HSP 1 Score: 59.7 bits (143), Expect = 1.270e-8
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    4 LRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            L  LI+PL+QV  G LRL PT  + PL FQL R   R++ AT  Y+P + PL EVL S  + K  + A L+
Sbjct:  490 LHPLIYPLTQVTLGALRLIPTATYFPLRFQLTRSLLRMSLATNTYIPLAAPLYEVLNSAEMRKPPKAASLK 560          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: A0A2C5YF95_9HYPO (Uncharacterized protein n=1 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5YF95_9HYPO)

HSP 1 Score: 58.9 bits (141), Expect = 2.380e-8
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 ELRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            +L++LI+PL+Q+  G +RL PT  + PL F L+    RL+ AT +Y+P + PLLE L S  L K+ + + L+
Sbjct:  517 QLKLLIYPLTQLTLGAMRLIPTAAYFPLRFMLIGSLLRLSRATGIYMPLASPLLEALSSAELRKRPKPSTLK 588          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: A0A3N4L0Q1_9PEZI (Noc2-domain-containing protein n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4L0Q1_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 3.250e-8
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 LRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            LR LI+PL QV  G +RL PT ++ PL F L R   R++ AT+VY+P S  + EVL S  L KK + + L+
Sbjct:  522 LRPLIYPLIQVTLGAIRLIPTAQYFPLRFYLTRSLLRISRATDVYIPLSPLIFEVLSSAELKKKPKPSTLK 592          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: A0A2C5ZM19_9HYPO (Uncharacterized protein n=1 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5ZM19_9HYPO)

HSP 1 Score: 57.8 bits (138), Expect = 6.070e-8
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 ELRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHLE 216
            +L++L++PL+Q+  G +RL PT  + PL F L+    RL+ AT VY+P + PLLE L S  L K+ + + L+
Sbjct:  517 QLKLLVYPLTQLTLGAMRLIPTAAYFPLRFILIGSLLRLSRATGVYMPLASPLLEALSSAELRKRPKPSTLK 588          
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Match: A0A6G1H672_9PEZI (Nucleolar complex protein 2 n=1 Tax=Aulographum hederae CBS 113979 TaxID=1176131 RepID=A0A6G1H672_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 6.070e-8
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    4 LRMLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPLLEVLRSPALFKKAREAHL 213
            LR L++P++QV  G +RL PT ++ PL FQLVR   RL+ AT  Y+P +  L EVL S  + K  +++ L
Sbjct:  499 LRPLVYPVTQVTLGAMRLIPTAQYFPLRFQLVRALLRLSRATGTYIPLAASLYEVLNSAEMRKAPKQSTL 568          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85214.16110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7J8_ECTSI1.130e-2581.82Nucleolar complex associated 2 homolog n=2 Tax=Ect... [more]
A0A3M7NF59_9EURO2.180e-1050.70Uncharacterized protein (Fragment) n=2 Tax=unclass... [more]
R7YZE9_CONA11.040e-947.22Uncharacterized protein n=1 Tax=Coniosporium apoll... [more]
A0A6A6CA99_9PEZI9.290e-946.48Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
UPI000CE1FF211.270e-846.48nucleolar complex protein 2-like n=1 Tax=Quercus s... [more]
UPI000CE17DDE1.270e-846.48uncharacterized NOC2 family protein C1142.04-like ... [more]
A0A2C5YF95_9HYPO2.380e-841.67Uncharacterized protein n=1 Tax=Ophiocordyceps aus... [more]
A0A3N4L0Q1_9PEZI3.250e-846.48Noc2-domain-containing protein n=3 Tax=Morchella T... [more]
A0A2C5ZM19_9HYPO6.070e-841.67Uncharacterized protein n=1 Tax=Ophiocordyceps aus... [more]
A0A6G1H672_9PEZI6.070e-844.29Nucleolar complex protein 2 n=1 Tax=Aulographum he... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85214contigH-elongata_contig85214:1105..2194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue9e-20
Seed eggNOG ortholog2880.D7G7J8
KEGG koko:K14833
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
EggNOG free text desc.domain, Protein
EggNOG OGsCOG5604@1,KOG2256@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85214.16110.1prot_H-elongata_contig85214.16110.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85214 1114..2194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.298285-UTR-H-elongata_contig85214:1104..11131622931255.298285-UTR-H-elongata_contig85214:1104..1113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85214 1105..1113 +
1691679761.675114-UTR-H-elongata_contig85214:1104..11131691679761.675114-UTR-H-elongata_contig85214:1104..1113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85214 1105..1113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.3177192-CDS-H-elongata_contig85214:1113..11371622931255.3177192-CDS-H-elongata_contig85214:1113..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85214 1114..1137 +
1691679761.685971-CDS-H-elongata_contig85214:1113..11371691679761.685971-CDS-H-elongata_contig85214:1113..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85214 1114..1137 +
1622931255.3359652-CDS-H-elongata_contig85214:1996..21941622931255.3359652-CDS-H-elongata_contig85214:1996..2194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85214 1997..2194 +
1691679761.6962702-CDS-H-elongata_contig85214:1996..21941691679761.6962702-CDS-H-elongata_contig85214:1996..2194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85214 1997..2194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85214.16110.1

>prot_H-elongata_contig85214.16110.1 ID=prot_H-elongata_contig85214.16110.1|Name=mRNA_H-elongata_contig85214.16110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MLIFPLSQVIGGVLRLCPTLRHSPLLFQLVRMRQRLAAATEVYVPCSKPL
LEVLRSPALFKKAREAHLEMPAR*
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mRNA from alignment at H-elongata_contig85214:1105..2194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85214.16110.1 ID=mRNA_H-elongata_contig85214.16110.1|Name=mRNA_H-elongata_contig85214.16110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-elongata_contig85214:1105..2194+ (Himanthalia elongata Himel1 dioecious)
GAGCTGCGGATGCTGATCTTTCCCCTCTCGCAGGTACATAGCCCAATATG CTATACTACAATATTTTATACTTCTTTAGTATTACTAAAATATTAGAGGC TAGCACCGTATATATTTTAGTTCCTGTGCAAACAAGCCGTGGTCTTGCGA AATCATTTAATGAAATAATGCCTTTTTGTTCGTCTATTCCGGCGTGCAAA AACACGCGTGATTTTACGAAACCATTTGATTGCAGTGTATGTTTTATGTT TTAATCTCAAAACATGTGAGCTATATAACTCAAACTTGAAACCCCTCGGG AAGGCATGCGCACCGTGACCTTTGCGAAATCATTATGTGATTAAACCACT CTTCCTTTTTGGTTTGCGGTGGGGATATCCCTCACGGGGCGCAATTTTTC CCTGTTTACCTTGCGTTTATCATAAGTACACGGATGGGTACACTTTTGTG GGTGGTTTTGGTTCGTTTTTTTGTTTTTGTCGTTTTGGTTTTGGTTTTTG TCGTTTTGGTTCGGTTTTTGGTTTTTGTCGTTTTGGTTTTTGGTTTTGTC GTTTTGGTTTTGGTCGTTTTGGTTCGGTTTTTTGTTTTGGTTTTGTTTTT TGTCGTTTTGGTTTTTGTCGTTTTGGTTCGATTTTTGGTTTTGTTTTGGT TTTTGTCGTTTTGGTTCGATTTTTGGTTTTGGTTTTGGTTTTTGTCGTTT TGGTTTTGGTTTTGGATTGGTTTCTCTGTTTTGGGAGTGCTTTTGGTTCG GTTTTTTGTTGTCCTCTTTTTCACTGTTAACTGTACAGTAGCTCGAATCG GGATAATGTGAACACACCATTATTTTTGCCGTTGCGCTATATATATACTA TATTATACTATACGGAGTACTATATATTTATCTGTTCCGTAGGTGATTGG GGGCGTCTTGCGCCTCTGCCCCACCCTGAGGCACTCGCCGCTGCTGTTCC AGCTCGTGAGGATGAGGCAGAGGCTGGCGGCCGCGACGGAGGTGTACGTT CCCTGCTCGAAACCCCTGCTGGAGGTGCTCCGCAGCCCGGCCCTTTTCAA GAAGGCGAGAGAGGCACACCTGGAGATGCCCGCGAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig85214:1105..2194+

>mRNA_H-elongata_contig85214.16110.1 ID=mRNA_H-elongata_contig85214.16110.1|Name=mRNA_H-elongata_contig85214.16110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig85214:1105..2194+ (Himanthalia elongata Himel1 dioecious)
ATGCTGATCTTTCCCCTCTCGCAGATGCTGATCTTTCCCCTCTCGCAGGT
GATTGGGGGCGTCTTGCGCCTCTGCCCCACCCTGAGGCACTCGCCGCTGC
TGTTCCAGCTCGTGAGGATGAGGCAGAGGCTGGCGGCCGCGACGGAGGTG
TACGTTCCCTGCTCGAAACCCCTGCTGGAGGTGCTCCGCAGCCCGGCCCT
TTTCAAGAAGGCGAGAGAGGCACACCTGGAGATGCCCGCGAGATAAGTGA
TTGGGGGCGTCTTGCGCCTCTGCCCCACCCTGAGGCACTCGCCGCTGCTG
TTCCAGCTCGTGAGGATGAGGCAGAGGCTGGCGGCCGCGACGGAGGTGTA
CGTTCCCTGCTCGAAACCCCTGCTGGAGGTGCTCCGCAGCCCGGCCCTTT
TCAAGAAGGCGAGAGAGGCACACCTGGAGATGCCCGCGAGATAA
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