mRNA_H-elongata_contig85.16097.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: D8LBD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD9_ECTSI) HSP 1 Score: 263 bits (671), Expect = 1.760e-82 Identity = 154/245 (62.86%), Postives = 178/245 (72.65%), Query Frame = 3
Query: 12 MLVRSLLMTVFLLALYGCLRVQSFIGATVLHRRVGSDQH----ISLSRNGKCGRSWRSRVYRQREGRRETAA-MMARGSTFRSRGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSEEDEEVAAAAARGDTAEYDYGLDRDVDGFEGITEDDFFTFN 731
M VRSL++ L+ YGC V SF+G +VL R Q + S +G+CG W V RR TA MMARGSTFRS ESKRQARVSQL+ ELAKI RLGHGIKT+DKI DDVRC+I VVDVDMSPDLR+AKVFISV GDVLEKREAY+WCVKN K+IRMAL ELKGMKRVPEL+F+D DI A+VDLMALID+VS DE+ AA R D E +++GFEG+TEDDFFTF+
Sbjct: 1 MAVRSLVIAAALITAYGCREVLSFVGVSVLPRACSQQQQPQQCLGASGHGRCG--WVGAVQPPPGKRRPTATVMMARGSTFRSTTESKRQARVSQLLTGELAKILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVSG-DEDGNEAALRDDGEE-------EIEGFEGVTEDDFFTFD 235
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A835ZHE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE8_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.140e-38 Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 3
Query: 207 TAAMMARGSTFRS-RGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVS 608
T M R + F++ R ESKRQAR+SQL+ ELA I RLGH +K ++D++R KI +VDV++SPDLR A++F+SV GD LEKREAY WCV+N IR AL+ LK MK VPEL F+ DIGA+VD+M LI KV+
Sbjct: 52 TQLRMGRANRFKAARPESKRQARISQLLTAELASIIRLGHHVKGSKALSDELRSKISIVDVNVSPDLRNARIFVSVYGDRLEKREAYGWCVRNTGGIRFALSQRLKDMKGVPELTFQQTDIGAAVDVMHLIGKVN 186
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7S2DN30_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN30_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.650e-30 Identity = 64/132 (48.48%), Postives = 92/132 (69.70%), Query Frame = 3
Query: 219 MARGSTFRSRGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSEE 614
M+RG+ ESKRQ RVSQ++ +E+ I R G + I D +R KI +VDV MSPDLRTAKV++SV GD++++R+AYSW V N+K+I+ +LA L MK VP+LYF++ D+ A+VD+M I+ + E
Sbjct: 45 MSRGNAVSKGRESKRQGRVSQVIRSEIVTILRRGSMKYMKKDIGDTLRQKISIVDVHMSPDLRTAKVYVSVFGDIVDRRQAYSWLVMNSKAIKHSLAQSLSAMKTVPDLYFKETDLAAAVDVMTTIESIHAE 176
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7S1U3D0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3D0_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.850e-28 Identity = 74/193 (38.34%), Postives = 110/193 (56.99%), Query Frame = 3
Query: 195 GRRETAAMMARG-STFRSRGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSEEDEEVAAAAARGDTAEYDYGLDR-----DVDGFEGITEDDFFTFNFDDKDGEE 755
G R M ARG S R R ES+RQ+R++QLV E++ I GHG+++ I ++R I +VDVD+SPDLR +++SV GD KREA++W V++ +++R LA +G+KR+PE+ F+ D+ A+VD+ LI EE + EYD DV G + ++D F DD+D EE
Sbjct: 21 GARAPMTMGARGGSLVRRRDESRRQSRIAQLVKAEVSAILLTGHGVRSPRDIDGELRKAISIVDVDVSPDLRNCNIYVSVRGDGAGKREAFAWLVRSTRALRHVLAQRNRGLKRIPEILFKQADVSAAVDVFRLI-------EEANGTGMYAEQGEYDXXXXXXXXXDDVFGLGAVDDEDLDMFMDDDEDFEE 206
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7S2SUM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM5_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.200e-25 Identity = 78/186 (41.94%), Postives = 106/186 (56.99%), Query Frame = 3
Query: 216 MMARGSTFRSRGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSEEDEEVAAAAARGDTAEYDYGLDRDVDGFE---GITED-----DFFTFNFDDKDG 749
+ ARG R ESKRQARV+QLV EL+++ R G T+ IT+ R KI +VDV MSPDLR AKVF+SV E R+AY+W V+++ + R L+ EL+ M+ VP L FR D+ +VD+M ID +++ R T RD +GFE G+ +D DF F+ DD DG
Sbjct: 54 VQARGPGVGRRDESKRQARVAQLVRAELSQVIRQGTRANTKG-ITEATRQKISIVDVHMSPDLRNAKVFVSVFASGPESRQAYAWLVQSSGAFRHELSQELRHMRSVPALTFRRADVAEAVDVMVAIDNLND---------GRART--------RDEEGFEDWLGVEDDFGDVADFLQFSDDDDDG 221
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7R9W0U4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0U4_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.060e-25 Identity = 62/131 (47.33%), Postives = 88/131 (67.18%), Query Frame = 3
Query: 231 STFRSRGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLG----DVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSE 611
S + + SKRQ RV +V +ELA+I + G IK D I D++R +I VV+ D+SPDLR A+V +S++G ++KR AYSW V++ K IR A+A LK MK P+L F D+GA+VD+M LI+KVS+
Sbjct: 47 SRYAASDRSKRQERVGHVVRSELARIIQAGFPIKNVDPIDDELRRRINVVNADVSPDLRHARVTVSIIGRGETSTVDKRRAYSWLVRSTKMIRHAMAQRLKHMKVCPDLKFVQADVGAAVDVMRLIEKVSD 177
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: F0Y767_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y767_AURAN) HSP 1 Score: 113 bits (282), Expect = 2.660e-25 Identity = 72/167 (43.11%), Postives = 100/167 (59.88%), Query Frame = 3
Query: 210 AAMMARGSTFRSRGE---SKRQARVSQLVATELAKIFRLGHG-IKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSEEDEEVAAAAARGDTAEYDYGLDRDVDGFE 698
A M RGS +R E S+RQ+RV+QLV +ELA + R G +KT D++ +V V+DV +SPDLR A I+ LGD KREA+SW VKN +S+R ALA LK KRVP + FR D+ A+ LM LID+ +++ + A G ++D LD + + E
Sbjct: 28 AVRMGRGSRGMAREEVDRSRRQSRVAQLVRSELATVIRDGAFLVKTGDRVDAEVLKSTSVLDVSVSPDLRAATATITTLGDTSAKREAFSWLVKNERSVRYALAKRLKHSKRVPAVTFRKADVSAATKLMDLIDRAADDGGDGGAGVIDG--LDFDLDLDDEAEAVE 192
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7S2NYX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYX9_9STRA) HSP 1 Score: 107 bits (266), Expect = 5.200e-23 Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query: 252 ESKRQARVSQLVATELAKIFRLGHGIKTRDKITD-DVRCKIGVVDVDMSPDLRTAKVFISVLGD------------VLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVS 608
+SKRQ RV QLV +E+A I +LGH IK D D D+R +I VV+ D+SPDLR A++ +SV+ V+EKR AYSW VK+ K+IR ALA L MK +P L F D+GA+VD+M I+ ++
Sbjct: 66 KSKRQFRVGQLVRSEIASIIKLGHEIKHTDGSLDSDLRLRISVVNADVSPDLRQARITVSVISKPNTDETAKLSDTVVEKRVAYSWLVKHTKNIRHALAQRLSHMKTIPNLTFAQADVGAAVDVMNKINNIN 197
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7S3F0D2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F0D2_9EUKA) HSP 1 Score: 103 bits (258), Expect = 1.530e-22 Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 3
Query: 270 RVSQLVATELAKIFRLG--HGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGDVLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVSEEDEEVAAAAARGDTA 656
RV Q+V +ELA + G HG K KI+ + I +VD+DMSPDLR A+V +S++GD +K A W +AK IR LA LKGMKR+P+L F+ +D+GA+VD+M I ++SEE + AA G A
Sbjct: 3 RVGQVVRSELATVLHSGAVHGNK---KISGRLLSMISIVDIDMSPDLRNARVKVSIIGDRKDKISAVRWLQGSAKPIRHVLAQRLKGMKRIPQLSFQHVDVGAAVDMMVKIQELSEERQRAEAARGEGGDA 130
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Match: A0A7S2UPV8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPV8_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.830e-22 Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 3
Query: 231 STFRSRGESKRQARVSQLVATELAKIFRLGHGIKTRDKITDDVRCKIGVVDVDMSPDLRTAKVFISVLGD--------VLEKREAYSWCVKNAKSIRMALAVELKGMKRVPELYFRDMDIGASVDLMALIDKVS 608
S + S+ SKRQ RV LV E++ I L H IK D + ++R +I VV+VD+SPDL A++ +S++G V+++R AYSW V++ K IR ALA L MK VP L F D+GA+VD+M LI+KV+
Sbjct: 55 SRYGSQDRSKRQERVGHLVRAEISSILTLSHEIKHSDYLEGELRKRISVVNVDVSPDLAQARITVSLVGGNHDTKEDAVVDQRRAYSWLVRSTKMIRHALAQRLSHMKGVPNLTFVLADVGAAVDVMQLIEKVA 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85.16097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85.16097.1 >prot_H-elongata_contig85.16097.1 ID=prot_H-elongata_contig85.16097.1|Name=mRNA_H-elongata_contig85.16097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp MLVRSLLMTVFLLALYGCLRVQSFIGATVLHRRVGSDQHISLSRNGKCGRback to top mRNA from alignment at H-elongata_contig85:8138..9377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85.16097.1 ID=mRNA_H-elongata_contig85.16097.1|Name=mRNA_H-elongata_contig85.16097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1240bp|location=Sequence derived from alignment at H-elongata_contig85:8138..9377+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85:8138..9377+ >mRNA_H-elongata_contig85.16097.1 ID=mRNA_H-elongata_contig85.16097.1|Name=mRNA_H-elongata_contig85.16097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at H-elongata_contig85:8138..9377+ (Himanthalia elongata Himel1 dioecious)back to top |