mRNA_H-elongata_contig84947.16091.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KKD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD5_9PHAE) HSP 1 Score: 100 bits (248), Expect = 6.170e-22 Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEW-HGQFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS S+ + ++ T+ R+D++ GR+F+DL G V S+GGN + M+ DDFTR + FLK K D +A R + A +G+ + ++ +D GGE G+F S E+ IK E TP Y+PQY GV ER
Sbjct: 10 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGNHYPMIVKDDFTRRTWIYFLKSKSDAASAFRSFLASVLA-DGIPSLVEIVRSDNGGEVVRGEFASVCNELLIKQEFTPAYSPQYNGVAER 142
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 8.950e-22 Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS ++ + +++ T++R+D++ GR+F+DL G V S+GG + M+ DDFTR + FLKHK D A R + A +G+ + ++ +D GGE+ G +F S E+ IK E TP Y+PQY GV ER
Sbjct: 699 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 8.980e-22 Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS ++ + +++ T++R+D++ GR+F+DL G V S+GG + M+ DDFTR + FLKHK D A R + A +G+ + ++ +D GGE+ G +F S E+ IK E TP Y+PQY GV ER
Sbjct: 406 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 7.640e-21 Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS S+ + ++ T+ R+D++ GR+F+DL G V S+GG + M+ DDFTR + FLK K D +A R + A +G+ + ++ +D GGE+ G +F S E+ IK E TP Y+PQY GV ER
Sbjct: 605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 6.880e-20 Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS S+ R + T+ R+D++ GR+F+DL G + S+GG + M+ DDFTR + FL++K D +A R + A G+ + ++ +D GGE+ G +F S E+ IK E TP Y+PQY GV ER
Sbjct: 220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAER 352
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.250e-19 Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS S+ R + + T+ R+D++ GR+F+DL G S+GG + M+ DDFTR + FL++K D +A R + A G+ + ++ +D GGE+ G +F S E+ IK E TP Y+PQY GV ER
Sbjct: 165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.570e-19 Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFA---PEGLKISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS S+ R + + T+ R+D++ GR+F+DL G + S+GG + M+ DDFTR + FLK++ D A R + A P ++I + +D GGE+ G +F S E+ IK E TP Y+PQY GV ER
Sbjct: 287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.860e-18 Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
C CS + R A++ T N +D++ GR+F++L G V S+GG + M+ DDFTR + FL+ K D +A R + + A +G+ I ++ +D GGE+ G +F S E+ IK E TP ++P++ GV ER
Sbjct: 426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6P9DXA8_JUGRE (uncharacterized protein LOC118344254 n=3 Tax=Juglans TaxID=16718 RepID=A0A6P9DXA8_JUGRE) HSP 1 Score: 85.9 bits (211), Expect = 6.470e-17 Identity = 51/132 (38.64%), Postives = 68/132 (51.52%), Query Frame = 1
Query: 1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLKISVIHTDGGGEWHGQFL-SFLGEIGIKPESTPPYTPQYIGVVER 393
C C + R A +T T+R L IDL GP SLGG R++++ +DDFTR+ V FL+ K + N +R + +G I I +D G E+ L SF E GI E + P TPQ GVVER
Sbjct: 871 CGSCQLGKQVRTAHKNTTAILTERPLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVEFLREKGEAPNVIRTLCKKLQNEQGKAIVRIRSDHGREFENSNLESFCDEEGISQEFSAPITPQQNGVVER 1002
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 8.350e-17 Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 10 CSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
CS + R A++ T N +D++ GR+F+DL G V S+GG + M+ DDFTR + FL+ K D + R + + A +G+ I ++ +D GG++ G +F S E+ IK E TP ++P++ GV ER
Sbjct: 257 CSMGKGIRKAIAHVTTNGSDKKLGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRA-DGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 386 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84947.16091.1 >prot_H-elongata_contig84947.16091.1 ID=prot_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp MRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFback to top mRNA from alignment at H-elongata_contig84947:2062..2454+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84947.16091.1 ID=mRNA_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig84947:2062..2454+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84947:2062..2454+ >mRNA_H-elongata_contig84947.16091.1 ID=mRNA_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig84947:2062..2454+ (Himanthalia elongata Himel1 dioecious)back to top |