mRNA_H-elongata_contig84947.16091.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84947.16091.1
Unique NamemRNA_H-elongata_contig84947.16091.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KKD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.170e-22
Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEW-HGQFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS S+  +  ++  T+ R+D++ GR+F+DL G   V S+GGN + M+  DDFTR   + FLK K D  +A R  +    A +G+   + ++ +D GGE   G+F S   E+ IK E TP Y+PQY GV ER
Sbjct:   10 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGNHYPMIVKDDFTRRTWIYFLKSKSDAASAFRSFLASVLA-DGIPSLVEIVRSDNGGEVVRGEFASVCNELLIKQEFTPAYSPQYNGVAER 142          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.950e-22
Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS ++  +  +++ T++R+D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FLKHK D   A R  +    A +G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  699 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.980e-22
Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS ++  +  +++ T++R+D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FLKHK D   A R  +    A +G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  406 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.640e-21
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS S+  +  ++  T+ R+D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FLK K D  +A R  +    A +G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.880e-20
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS S+  R  +   T+ R+D++ GR+F+DL G   + S+GG  + M+  DDFTR   + FL++K D  +A R  +    A  G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAER 352          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.250e-19
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS S+  R  + + T+ R+D++ GR+F+DL G     S+GG  + M+  DDFTR   + FL++K D  +A R  +    A  G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.570e-19
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFA---PEGLKISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS S+  R  + + T+ R+D++ GR+F+DL G   + S+GG  + M+  DDFTR   + FLK++ D   A R  +    A   P  ++I  + +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.860e-18
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            C  CS  +  R A++  T N +D++ GR+F++L G   V S+GG  + M+  DDFTR   + FL+ K D  +A R  + +  A +G+   I ++ +D GGE+ G +F S   E+ IK E TP ++P++ GV ER
Sbjct:  426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6P9DXA8_JUGRE (uncharacterized protein LOC118344254 n=3 Tax=Juglans TaxID=16718 RepID=A0A6P9DXA8_JUGRE)

HSP 1 Score: 85.9 bits (211), Expect = 6.470e-17
Identity = 51/132 (38.64%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 CVHCSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLKISVIHTDGGGEWHGQFL-SFLGEIGIKPESTPPYTPQYIGVVER 393
            C  C   +  R A   +T   T+R    L IDL GP    SLGG R++++ +DDFTR+  V FL+ K +  N +R +       +G  I  I +D G E+    L SF  E GI  E + P TPQ  GVVER
Sbjct:  871 CGSCQLGKQVRTAHKNTTAILTERPLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVEFLREKGEAPNVIRTLCKKLQNEQGKAIVRIRSDHGREFENSNLESFCDEEGISQEFSAPITPQQNGVVER 1002          
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.350e-17
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   10 CSESRMRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 393
            CS  +  R A++  T N +D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FL+ K D  +  R  + +  A +G+   I ++ +D GG++ G +F S   E+ IK E TP ++P++ GV ER
Sbjct:  257 CSMGKGIRKAIAHVTTNGSDKKLGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRA-DGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKD5_9PHAE6.170e-2240.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE8.950e-2239.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE8.980e-2239.55Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE7.640e-2139.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE6.880e-2038.81Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE1.250e-1938.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE1.570e-1939.26Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JH25_9PHAE2.860e-1837.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P9DXA8_JUGRE6.470e-1738.64uncharacterized protein LOC118344254 n=3 Tax=Jugla... [more]
A0A6H5KVT7_9PHAE8.350e-1736.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84947contigH-elongata_contig84947:2062..2454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.6
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog90675.XP_010451516.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37SNQ@33090,3GHRQ@35493,3HVU8@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.9656758-UTR-H-elongata_contig84947:2061..20851622931252.9656758-UTR-H-elongata_contig84947:2061..2085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84947 2062..2085 +
1691679760.83487-UTR-H-elongata_contig84947:2061..20851691679760.83487-UTR-H-elongata_contig84947:2061..2085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84947 2062..2085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.9883988-CDS-H-elongata_contig84947:2085..24541622931252.9883988-CDS-H-elongata_contig84947:2085..2454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84947 2086..2454 +
1691679760.844232-CDS-H-elongata_contig84947:2085..24541691679760.844232-CDS-H-elongata_contig84947:2085..2454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84947 2086..2454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84947.16091.1prot_H-elongata_contig84947.16091.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84947 2086..2454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84947.16091.1

>prot_H-elongata_contig84947.16091.1 ID=prot_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRF
KMVRFLKHKRDTTNALRDIINDCFAPEGLKISVIHTDGGGEWHGQFLSFL
GEIGIKPESTPPYTPQYIGVVER
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mRNA from alignment at H-elongata_contig84947:2062..2454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84947.16091.1 ID=mRNA_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig84947:2062..2454+ (Himanthalia elongata Himel1 dioecious)
TGCGTACACTGCTCCGAATCTAGGATGCGACGATACGCCGTGTCTAAATC CACAGAGAATCGGACTGACAGGCGCGCGGGACGGCTGTTTATTGATCTCT CAGGCCCCTTCCACGTGACGTCTCTCGGAGGAAACAGATTCGTCATGCTG TGCATTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCAAGCACAA GAGGGACACCACGAATGCGTTAAGGGACATAATCAACGACTGCTTCGCGC CCGAGGGCCTCAAGATCAGCGTCATCCACACGGATGGTGGGGGAGAATGG CACGGCCAGTTCCTGTCTTTTCTGGGTGAGATCGGAATCAAGCCCGAGTC CACACCCCCATATACCCCCCAATACATTGGCGTCGTGGAGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig84947:2062..2454+

>mRNA_H-elongata_contig84947.16091.1 ID=mRNA_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig84947:2062..2454+ (Himanthalia elongata Himel1 dioecious)
ATGCGACGATACGCCGTGTCTAAATCCACAGAGAATCGGACTGACAGGCG
CGCGGGACGGCTGTTTATTGATCTCTCAGGCCCCTTCCACGTGACGTCTC
TCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTC
AAAATGGTCCGTTTCCTCAAGCACAAGAGGGACACCACGAATGCGTTAAG
GGACATAATCAACGACTGCTTCGCGCCCGAGGGCCTCAAGATCAGCGTCA
TCCACACGGATGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTTCTG
GGTGAGATCGGAATCAAGCCCGAGTCCACACCCCCATATACCCCCCAATA
CATTGGCGTCGTGGAGCGCATGCGACGATACGCCGTGTCTAAATCCACAG
AGAATCGGACTGACAGGCGCGCGGGACGGCTGTTTATTGATCTCTCAGGC
CCCTTCCACGTGACGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCAT
TGACGACTTCACCCGCTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGGG
ACACCACGAATGCGTTAAGGGACATAATCAACGACTGCTTCGCGCCCGAG
GGCCTCAAGATCAGCGTCATCCACACGGATGGTGGGGGAGAATGGCACGG
CCAGTTCCTGTCTTTTCTGGGTGAGATCGGAATCAAGCCCGAGTCCACAC
CCCCATATACCCCCCAATACATTGGCGTCGTGGAGCGC
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