prot_H-elongata_contig84857.16085.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig84857.16085.1
Unique Name	prot_H-elongata_contig84857.16085.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	74

Homology

[Close]

BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.920e-18
Identity = 35/74 (47.30%), Postives = 57/74 (77.03%), Query Frame = 0

Query:    1 MEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYSLQFLL 74
            ++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT +FLQGVGAYS + LL
Sbjct:   74 LQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLL 147

[Close]

BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.920e-17
Identity = 34/74 (45.95%), Postives = 57/74 (77.03%), Query Frame = 0

Query:    1 MEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYSLQFLL 74
            ++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT +FLQGVGAYS + L+
Sbjct:  202 LQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLM 275

[Close]

BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.230e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0

Query:   23 EKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYSLQFL 73
             +G+ W Y+Y L+AWV+SLIA FDD  SV+WL +TT  FLQGVGAYS QFL
Sbjct:  195 RRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245

[Close]

BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 5.810e-9
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    3 YVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYS 69
            YV   ++ + + +++   +  + +GW Y   L+AWVLSL A+F  ++SV WLA+TT +FLQG+G  S
Sbjct:  197 YVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot

BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7G1N8_ECTSI	1.920e-18	47.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JMR1_9PHAE	5.920e-17	45.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIF9_9PHAE	6.230e-14	64.71	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LDF2_ECTSI	5.810e-9	40.30	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 23..28
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 29..45
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..70
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..50
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 71..74
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..22
None	No IPR available	TMHMM	TMhelix		coord: 51..73
None	No IPR available	TMHMM	TMhelix		coord: 3..22

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig84857	contig	H-elongata_contig84857:25..246 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig84857.16085.1	mRNA_H-elongata_contig84857.16085.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig84857 16..246 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig84857.16085.1 ID=prot_H-elongata_contig84857.16085.1|Name=mRNA_H-elongata_contig84857.16085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVS
VIWLALTTAIFLQGVGAYSLQFLL