mRNA_H-elongata_contig84857.16085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84857.16085.1
Unique NamemRNA_H-elongata_contig84857.16085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.370e-20
Identity = 36/77 (46.75%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 NQFMEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYSLQFLL 231
            N++++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT +FLQGVGAYS + LL
Sbjct:   71 NRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLL 147
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BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.540e-19
Identity = 35/77 (45.45%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 NQFMEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYSLQFLL 231
            N++++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT +FLQGVGAYS + L+
Sbjct:  199 NRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLM 275
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BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.750e-15
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 NQFMEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYSLQFL 228
            N+F  Y+   ++   +V +       +G+ W Y+Y L+AWV+SLIA FDD  SV+WL +TT  FLQGVGAYS QFL
Sbjct:  170 NRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245
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BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.400e-9
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   16 YVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAIFLQGVGAYS 216
            YV   ++ + + +++   +  + +GW Y   L+AWVLSL A+F  ++SV WLA+TT +FLQG+G  S
Sbjct:  197 YVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84857.16085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1N8_ECTSI2.370e-2046.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMR1_9PHAE8.540e-1945.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF9_9PHAE1.750e-1548.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF2_ECTSI3.400e-940.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84857contigH-elongata_contig84857:16..246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size231
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.438664-UTR-H-elongata_contig84857:15..241622931252.438664-UTR-H-elongata_contig84857:15..24Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84857 16..24 +
1691679760.6718845-UTR-H-elongata_contig84857:15..241691679760.6718845-UTR-H-elongata_contig84857:15..24Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84857 16..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.464545-CDS-H-elongata_contig84857:24..2461622931252.464545-CDS-H-elongata_contig84857:24..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84857 25..246 +
1691679760.685728-CDS-H-elongata_contig84857:24..2461691679760.685728-CDS-H-elongata_contig84857:24..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84857 25..246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84857.16085.1prot_H-elongata_contig84857.16085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84857 25..246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84857.16085.1

>prot_H-elongata_contig84857.16085.1 ID=prot_H-elongata_contig84857.16085.1|Name=mRNA_H-elongata_contig84857.16085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MEYVFVLIMSITWVVIFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVS
VIWLALTTAIFLQGVGAYSLQFLL
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mRNA from alignment at H-elongata_contig84857:16..246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84857.16085.1 ID=mRNA_H-elongata_contig84857.16085.1|Name=mRNA_H-elongata_contig84857.16085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig84857:16..246+ (Himanthalia elongata Himel1 dioecious)
AACCAGTTTATGGAATATGTCTTCGTCCTGATCATGTCCATTACGTGGGT
CGTTATTTTTGGATTTATCACCTTCGAAAAGGGAAATGGGTGGGAGTATA
ACTACATACTTGTGGCGTGGGTATTGTCACTTATTGCTCGTTTCGACGAC
TACGTCAGCGTCATTTGGTTGGCCCTCACGACGGCCATTTTTCTTCAGGG
AGTCGGTGCGTACTCCCTCCAATTTTTGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig84857:16..246+

>mRNA_H-elongata_contig84857.16085.1 ID=mRNA_H-elongata_contig84857.16085.1|Name=mRNA_H-elongata_contig84857.16085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig84857:16..246+ (Himanthalia elongata Himel1 dioecious)
ATGGAATATGTCTTCGTCCTGATCATGTCCATTACGTGGGTCGTTATTTT
TGGATTTATCACCTTCGAAAAGGGAAATGGGTGGGAGTATAACTACATAC
TTGTGGCGTGGGTATTGTCACTTATTGCTCGTTTCGACGACTACGTCAGC
GTCATTTGGTTGGCCCTCACGACGGCCATTTTTCTTCAGGGAGTCGGTGC
GTACTCCCTCCAATTTTTGTTAATGGAATATGTCTTCGTCCTGATCATGT
CCATTACGTGGGTCGTTATTTTTGGATTTATCACCTTCGAAAAGGGAAAT
GGGTGGGAGTATAACTACATACTTGTGGCGTGGGTATTGTCACTTATTGC
TCGTTTCGACGACTACGTCAGCGTCATTTGGTTGGCCCTCACGACGGCCA
TTTTTCTTCAGGGAGTCGGTGCGTACTCCCTCCAATTTTTGTTA
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