mRNA_H-elongata_contig84543.16063.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE) HSP 1 Score: 221 bits (562), Expect = 1.500e-70 Identity = 106/132 (80.30%), Postives = 113/132 (85.61%), Query Frame = 1
Query: 1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRDPSSSTGWTIVEHHSSVMPTSPAQLKHAK 396
++WK+ VT GTPDAP TA LYA DGVLWGTVSEEVRDTPEEIYDYFDYFARLP LRLSE+TPVSLRVYGDFAT+AGTYTF W+G DG EKRARFSFTFR DP S T WTIVEHHSS MPTSP QLKH +
Sbjct: 112 IRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLKHVR 243
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 211 bits (537), Expect = 7.200e-63 Identity = 106/130 (81.54%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
V WKDTVTSGT DAP TAALYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LRL EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S T WTIVEHHSS MP +PA LK
Sbjct: 142 VVWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRLVEYTPVAVRVYGDFAVQAGTYTFAFQGADGATVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPNAPAGLK 271
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.190e-61 Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 1
Query: 7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
WK+TVTSGT DAP TAALYA D VLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S WTIVEHHSS MPT+PA LK
Sbjct: 124 WKETVTSGTYDAPKKTAALYAEDAVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLK 251
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 207 bits (526), Expect = 2.340e-61 Identity = 103/128 (80.47%), Postives = 112/128 (87.50%), Query Frame = 1
Query: 7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
WK+TVTSGT DAP TAALYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S WTIVEHHSS MPT+PA LK
Sbjct: 139 WKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLK 266
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 207 bits (526), Expect = 3.250e-61 Identity = 101/137 (73.72%), Postives = 112/137 (81.75%), Query Frame = 1
Query: 1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLKHAKNASD 408
+ WKDTVT GT DAP TAALYAPD VLWGTVSEEVR+TPE+IYDYFD+FARLP+LRL EYTP +RVYG+FA QAGTYTFAW+G DG T EKRARFSFTFRR P S WTIVEHHSS MP +PA+LKH + D
Sbjct: 331 IVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRRGKPGSPRPWTIVEHHSSSMPDAPAELKHVEPEDD 467
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.370e-60 Identity = 99/130 (76.15%), Postives = 110/130 (84.62%), Query Frame = 1
Query: 1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
V WKDTVTSGT DAP TAALYAPDG LWGTVSEEVRDTP++IY YFDYFARLP+L++ EYTPV++RVYGDFA QAGTYTF+W+ DG EKRARFSFTFRRD P + WTIVEHHSS MPT+PA LK
Sbjct: 36 VLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELKVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGTIVEKRARFSFTFRRDNPGTDRPWTIVEHHSSSMPTAPAGLK 165
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 205 bits (521), Expect = 3.910e-60 Identity = 100/130 (76.92%), Postives = 110/130 (84.62%), Query Frame = 1
Query: 1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
V WKDTVTSGT DAP TAALYAPDG LWGTVSEEVRDTP++IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTF+W+ DG EKRARFSFTFRRD P + WTIVEHHSS MPT+PA LK
Sbjct: 181 VLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGAIVEKRARFSFTFRRDNPGTERPWTIVEHHSSSMPTAPAGLK 310
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 208 bits (530), Expect = 9.820e-60 Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 1
Query: 7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
WKDTVTSGT DAP TAALYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S T WTIVEHHSS MP +PA LK
Sbjct: 1269 WKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFAFQGADGETVEKRARFSFTFRRDHPGSPTPWTIVEHHSSSMPNAPAGLK 1396
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A836CEG0_9STRA (DUF4440 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG0_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.630e-53 Identity = 85/130 (65.38%), Postives = 101/130 (77.69%), Query Frame = 1
Query: 7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWK-GADGGTAEKRARFSFTFRRDPSSSTGWTIVEHHSSVMPTSPAQLKHA 393
W TVTSGT +A +TA LYAPDGVLWGT+SEEVRDTP EI+DYFDYFA P LR+S Y P+ +RV GD A G YTF W G+ GGTA KRAR+SF +RRDP + TGWTI++HHSS MP +PA+L+HA
Sbjct: 9 WLRTVTSGTANAARDTAQLYAPDGVLWGTLSEEVRDTPAEIFDYFDYFANKPHLRVSGYRPL-IRVDGDVALNTGYYTFTWDDGSSGGTASKRARYSFVYRRDPLAPTGWTIIDHHSSAMPDAPAKLRHA 137
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JTS4_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTS4_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.820e-51 Identity = 92/140 (65.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query: 7 WKDTVTSGTPDAPLNTAALYAPDGVLWGT------------VSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRR-DPSSSTGWTIVEHHSSVMPTSPAQLK 387
W +TVT GT DAP TA LYAPD +LWGT VSE VRDTPE+IY YFDYFARLP+L++ EYTP +RVYGDFA QAG+YTF+W+G DG T E RARFSFTFRR PSS WTIVEHHSS MPTSP +L+
Sbjct: 219 WTETVTRGTYDAPKRTAELYAPDAILWGTEVCGXXXXXXXTVSETVRDTPEQIYAYFDYFARLPELKVVEYTPAPVRVYGDFAAQAGSYTFSWQGTDGSTVEMRARFSFTFRRAGPSSPQPWTIVEHHSSSMPTSPLELE 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84543.16063.1 >prot_H-elongata_contig84543.16063.1 ID=prot_H-elongata_contig84543.16063.1|Name=mRNA_H-elongata_contig84543.16063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MPRMAFSGAPCRKRSATRPRRSTTTSTILPVFRSCGSRSTPRSPCGCTVTback to top mRNA from alignment at H-elongata_contig84543:1839..2774- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84543.16063.1 ID=mRNA_H-elongata_contig84543.16063.1|Name=mRNA_H-elongata_contig84543.16063.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=936bp|location=Sequence derived from alignment at H-elongata_contig84543:1839..2774- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84543:1839..2774- >mRNA_H-elongata_contig84543.16063.1 ID=mRNA_H-elongata_contig84543.16063.1|Name=mRNA_H-elongata_contig84543.16063.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig84543:1839..2774- (Himanthalia elongata Himel1 dioecious)back to top |