mRNA_H-elongata_contig84543.16063.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84543.16063.1
Unique NamemRNA_H-elongata_contig84543.16063.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 1.500e-70
Identity = 106/132 (80.30%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRDPSSSTGWTIVEHHSSVMPTSPAQLKHAK 396
            ++WK+ VT GTPDAP  TA LYA DGVLWGTVSEEVRDTPEEIYDYFDYFARLP LRLSE+TPVSLRVYGDFAT+AGTYTF W+G DG   EKRARFSFTFR DP S T WTIVEHHSS MPTSP QLKH +
Sbjct:  112 IRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLKHVR 243          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 7.200e-63
Identity = 106/130 (81.54%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
            V WKDTVTSGT DAP  TAALYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LRL EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S T WTIVEHHSS MP +PA LK
Sbjct:  142 VVWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRLVEYTPVAVRVYGDFAVQAGTYTFAFQGADGATVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPNAPAGLK 271          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.190e-61
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
            WK+TVTSGT DAP  TAALYA D VLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S   WTIVEHHSS MPT+PA LK
Sbjct:  124 WKETVTSGTYDAPKKTAALYAEDAVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLK 251          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 2.340e-61
Identity = 103/128 (80.47%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
            WK+TVTSGT DAP  TAALYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S   WTIVEHHSS MPT+PA LK
Sbjct:  139 WKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLK 266          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 3.250e-61
Identity = 101/137 (73.72%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLKHAKNASD 408
            + WKDTVT GT DAP  TAALYAPD VLWGTVSEEVR+TPE+IYDYFD+FARLP+LRL EYTP  +RVYG+FA QAGTYTFAW+G DG T EKRARFSFTFRR  P S   WTIVEHHSS MP +PA+LKH +   D
Sbjct:  331 IVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRRGKPGSPRPWTIVEHHSSSMPDAPAELKHVEPEDD 467          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.370e-60
Identity = 99/130 (76.15%), Postives = 110/130 (84.62%), Query Frame = 1
Query:    1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
            V WKDTVTSGT DAP  TAALYAPDG LWGTVSEEVRDTP++IY YFDYFARLP+L++ EYTPV++RVYGDFA QAGTYTF+W+  DG   EKRARFSFTFRRD P +   WTIVEHHSS MPT+PA LK
Sbjct:   36 VLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELKVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGTIVEKRARFSFTFRRDNPGTDRPWTIVEHHSSSMPTAPAGLK 165          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 3.910e-60
Identity = 100/130 (76.92%), Postives = 110/130 (84.62%), Query Frame = 1
Query:    1 VQWKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
            V WKDTVTSGT DAP  TAALYAPDG LWGTVSEEVRDTP++IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTF+W+  DG   EKRARFSFTFRRD P +   WTIVEHHSS MPT+PA LK
Sbjct:  181 VLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGAIVEKRARFSFTFRRDNPGTERPWTIVEHHSSSMPTAPAGLK 310          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 9.820e-60
Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRRD-PSSSTGWTIVEHHSSVMPTSPAQLK 387
            WKDTVTSGT DAP  TAALYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ EYTPV++RVYGDFA QAGTYTFA++GADG T EKRARFSFTFRRD P S T WTIVEHHSS MP +PA LK
Sbjct: 1269 WKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFAFQGADGETVEKRARFSFTFRRDHPGSPTPWTIVEHHSSSMPNAPAGLK 1396          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A836CEG0_9STRA (DUF4440 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.630e-53
Identity = 85/130 (65.38%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    7 WKDTVTSGTPDAPLNTAALYAPDGVLWGTVSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWK-GADGGTAEKRARFSFTFRRDPSSSTGWTIVEHHSSVMPTSPAQLKHA 393
            W  TVTSGT +A  +TA LYAPDGVLWGT+SEEVRDTP EI+DYFDYFA  P LR+S Y P+ +RV GD A   G YTF W  G+ GGTA KRAR+SF +RRDP + TGWTI++HHSS MP +PA+L+HA
Sbjct:    9 WLRTVTSGTANAARDTAQLYAPDGVLWGTLSEEVRDTPAEIFDYFDYFANKPHLRVSGYRPL-IRVDGDVALNTGYYTFTWDDGSSGGTASKRARYSFVYRRDPLAPTGWTIIDHHSSAMPDAPAKLRHA 137          
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Match: A0A6H5JTS4_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTS4_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.820e-51
Identity = 92/140 (65.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    7 WKDTVTSGTPDAPLNTAALYAPDGVLWGT------------VSEEVRDTPEEIYDYFDYFARLPQLRLSEYTPVSLRVYGDFATQAGTYTFAWKGADGGTAEKRARFSFTFRR-DPSSSTGWTIVEHHSSVMPTSPAQLK 387
            W +TVT GT DAP  TA LYAPD +LWGT            VSE VRDTPE+IY YFDYFARLP+L++ EYTP  +RVYGDFA QAG+YTF+W+G DG T E RARFSFTFRR  PSS   WTIVEHHSS MPTSP +L+
Sbjct:  219 WTETVTRGTYDAPKRTAELYAPDAILWGTEVCGXXXXXXXTVSETVRDTPEQIYAYFDYFARLPELKVVEYTPAPVRVYGDFAAQAGSYTFSWQGTDGSTVEMRARFSFTFRRAGPSSPQPWTIVEHHSSSMPTSPLELE 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84543.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSB2_9PHAE1.500e-7080.30DUF4440 domain-containing protein n=2 Tax=Ectocarp... [more]
D7FN21_ECTSI7.200e-6381.54Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5JT29_9PHAE1.190e-6179.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF8_ECTSI2.340e-6180.47Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5K0Z5_9PHAE3.250e-6173.72PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JX02_9PHAE1.370e-6076.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF9_ECTSI3.910e-6076.92Similar to Uncharacterized protein conserved in ba... [more]
A0A6H5LB09_9PHAE9.820e-6081.25Reverse transcriptase domain-containing protein n=... [more]
A0A836CEG0_9STRA2.630e-5365.38DUF4440 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JTS4_9PHAE1.820e-5165.71PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84543contigH-elongata_contig84543:1839..2774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size420
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84543.16063.1prot_H-elongata_contig84543.16063.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84543 1874..2710 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.329054-UTR-H-elongata_contig84543:1838..18731622931250.329054-UTR-H-elongata_contig84543:1838..1873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84543 1839..1873 -
1691679759.6742544-UTR-H-elongata_contig84543:1838..18731691679759.6742544-UTR-H-elongata_contig84543:1838..1873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84543 1839..1873 -
1622931250.3781197-UTR-H-elongata_contig84543:2710..27741622931250.3781197-UTR-H-elongata_contig84543:2710..2774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84543 2711..2774 -
1691679759.7051547-UTR-H-elongata_contig84543:2710..27741691679759.7051547-UTR-H-elongata_contig84543:2710..2774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84543 2711..2774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.3483796-CDS-H-elongata_contig84543:1873..21171622931250.3483796-CDS-H-elongata_contig84543:1873..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84543 1874..2117 -
1691679759.6842203-CDS-H-elongata_contig84543:1873..21171691679759.6842203-CDS-H-elongata_contig84543:1873..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84543 1874..2117 -
1622931250.3638618-CDS-H-elongata_contig84543:2633..27101622931250.3638618-CDS-H-elongata_contig84543:2633..2710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84543 2634..2710 -
1691679759.6939974-CDS-H-elongata_contig84543:2633..27101691679759.6939974-CDS-H-elongata_contig84543:2633..2710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84543 2634..2710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84543.16063.1

>prot_H-elongata_contig84543.16063.1 ID=prot_H-elongata_contig84543.16063.1|Name=mRNA_H-elongata_contig84543.16063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MPRMAFSGAPCRKRSATRPRRSTTTSTILPVFRSCGSRSTPRSPCGCTVT
LPLRPALTPSRGRGRTVGPPKNARGSASRSGVIRAARRGGRSWSTTLQSC
RRRLPS*
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mRNA from alignment at H-elongata_contig84543:1839..2774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84543.16063.1 ID=mRNA_H-elongata_contig84543.16063.1|Name=mRNA_H-elongata_contig84543.16063.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=936bp|location=Sequence derived from alignment at H-elongata_contig84543:1839..2774- (Himanthalia elongata Himel1 dioecious)
GTCCAGTGGAAGGACACCGTGACGTCAGGCACGCCCGACGCGCCTCTTAA TACAGCGGCTCTCTATGCCCCGGATGGCGTTCTCTGGGGCACCGTGTCGG AAGAGGTCCGCGACACGCCCGAGGAGATCTACGACTACTTCGTGAGTTTG GTTGACTGTTGTGTTTTTATGTGTGTCGTGGGGCGTGTTTCTCTACCTAT GCTTGGTTGATCATGTGAGGGGGAGGATGCCATTTGGAGCCAGTCAGGAG CGATTGGCATGGGCGATTCGGGAGGAAAGTGGGCATTTGCTCGAGGATCT CAAGCGGCTCAATACCAGTAATGTGCCGATTTTCCGCTCTTAATGTGTTT TGTGTATTGGAAAATGTGCGCAAAGCAGAGCGGTCCGGCCGTTCGCTCCG ATTTTCAGCCAGCGATGGCCTGACTCATAACCATGCCTCGAAACAAGGGT TTGCTCCTTACATCCGTGGAGAGCGGCCACAGTCACGGTTTGTATTTATG GATAAGGGGTGGGATGATCCAGGGAGATGCATGATAAGATGACGTGGAAG TCTTTCTAGAAGGCAAACTTTTTCGCTCGACGTACCTTTATAATTAGTTA TTCCCTCCCGTTCCCCCCTCCCCACCTTCTCTTTTATTTTTATTTTTTTT ATTCCAGGACTATTTTGCCCGTCTTCCGCAGCTGCGGCTCTCGGAGTACA CCCCGGTCTCCTTGCGGGTGTACGGTGACTTTGCCACTCAGGCCGGCACT TACACCTTCGCGTGGAAGGGGGCGGACGGTGGGACCGCCGAAAAACGCGC GAGGTTCAGCTTCACGTTCAGGCGTGATCCGAGCAGCTCGACGGGGTGGA CGATCGTGGAGCACCACTCTTCAGTCATGCCGACGTCGCCTGCCCAGCTG AAGCATGCGAAAAATGCCTCGGATCATGATGTAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig84543:1839..2774-

>mRNA_H-elongata_contig84543.16063.1 ID=mRNA_H-elongata_contig84543.16063.1|Name=mRNA_H-elongata_contig84543.16063.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig84543:1839..2774- (Himanthalia elongata Himel1 dioecious)
ATGCCCCGGATGGCGTTCTCTGGGGCACCGTGTCGGAAGAGGTCCGCGAC
ACGCCCGAGGAGATCTACGACTACTTCATGCCCCGGATGGCGTTCTCTGG
GGCACCGTGTCGGAAGAGGTCCGCGACACGCCCGAGGAGATCTACGACTA
CTTCGACTATTTTGCCCGTCTTCCGCAGCTGCGGCTCTCGGAGTACACCC
CGGTCTCCTTGCGGGTGTACGGTGACTTTGCCACTCAGGCCGGCACTTAC
ACCTTCGCGTGGAAGGGGGCGGACGGTGGGACCGCCGAAAAACGCGCGAG
GTTCAGCTTCACGTTCAGGCGTGATCCGAGCAGCTCGACGGGGTGGACGA
TCGTGGAGCACCACTCTTCAGTCATGCCGACGTCGCCTGCCCAGCTGAGA
CTATTTTGCCCGTCTTCCGCAGCTGCGGCTCTCGGAGTACACCCCGGTCT
CCTTGCGGGTGTACGGTGACTTTGCCACTCAGGCCGGCACTTACACCTTC
GCGTGGAAGGGGGCGGACGGTGGGACCGCCGAAAAACGCGCGAGGTTCAG
CTTCACGTTCAGGCGTGATCCGAGCAGCTCGACGGGGTGGACGATCGTGG
AGCACCACTCTTCAGTCATGCCGACGTCGCCTGCCCAGCTGA
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