mRNA_H-elongata_contig83399.15978.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 84.7 bits (208), Expect = 5.860e-17 Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT--KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
F ++DLG Y LG ITR+R L Q QYI E FG+T K + + LSKS SPQT EVEEM +IPY +L++ ATMTRPDI++ A LA+F
Sbjct: 308 FKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARF 414
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT) HSP 1 Score: 82.8 bits (203), Expect = 2.920e-16 Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT--KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
F +KD+GKA + LG IT ++ +T DQ YI+ + FG++ K S + + LSK+DSP AE+E+M+Q+PY+E LM+ + TRPDISF ++L++F
Sbjct: 1100 FRMKDMGKAKFCLGIKITETKSC--ITLDQQHYIEEILNKFGMSECKPSYTPMQHNQKLSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRF 1204
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A060SV79_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SV79_PYCCI) HSP 1 Score: 81.3 bits (199), Expect = 1.000e-15 Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKTSIPSVAGE--KALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
+ + DLG + LG I+RD AG L+ QH YI + F T S + + LSK+ P++ AEV MR++PYRE ALM+AA TRPDI+FA LA+F
Sbjct: 881 YKLTDLGPVSWLLGIKISRDLTAGTLSLSQHAYIDALLARFNFTDLKPVSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAISALMYAALGTRPDIAFAVSTLAQF 987
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: Q849C0_ASTYP (Reverse transcriptase (Fragment) n=1 Tax=Aster yellows phytoplasma TaxID=35779 RepID=Q849C0_ASTYP) HSP 1 Score: 77.4 bits (189), Expect = 1.420e-15 Identity = 42/108 (38.89%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTK---TSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
F +KD+G A + LG ITRDR + DQ Y++++ + F + + SIP GE+ LSK SP+T E E+M+ +PY+E +L++AA ++RPD+S+A +++F
Sbjct: 57 FKMKDMGIAKFILGFRITRDRKNKKIFIDQRAYLESVLKRFNMDQCNPVSIPINVGER-LSKEQSPKTVEEAEKMKNVPYQEAVGSLLFAAQVSRPDLSYAVSCVSRF 163
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI) HSP 1 Score: 79.3 bits (194), Expect = 4.790e-15 Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKTSIPSVAGE--KALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
+ I DLG + LG I+ D AG L+ QH YI+ + F T S+ + + LSK+ P++ AEV MR++PYRE ALM+AA TRPDI+FA LA+F
Sbjct: 1019 YKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQF 1125
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A1Y1LYU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LYU4_PHOPY) HSP 1 Score: 75.5 bits (184), Expect = 1.070e-13 Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGV---TKTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
F +KD+G+A + LG ITRDR + DQ Y++++ + F + P++ GEK LS + P ++ E E+M ++PY+E +L++AA ++RPDISFA + ++++
Sbjct: 850 FKVKDIGEARFVLGMQITRDRKNKKIWLDQQSYVESLLKKFKMWDCNPVDTPALLGEK-LSINMCPNSEDEAEKMSRVPYQEAVGSLLFAAQVSRPDISFAVNNVSRY 956
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI) HSP 1 Score: 73.9 bits (180), Expect = 1.700e-13 Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 7 IKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT--KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
+ DLG + LG I+RD AG + QH YI + F T K + + LSK+ P++ AEV MR++PYRE LM+AA T+PDI FA LA+F
Sbjct: 1 MTDLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNFTDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQF 105
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A8H7F054_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F054_AGABI) HSP 1 Score: 73.6 bits (179), Expect = 5.120e-13 Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT-----KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
+ +KDLG+A + LG I RD N G + Q Y + + E F + T +P+ LS +DSP T+ EV +M+ +PYRE +LMW TRPD+S+A + L++F
Sbjct: 1178 YELKDLGEARFILGMKIERDTN-GNIRLSQRAYAERVLERFHMADAKPRSTPLPTSV---TLSINDSPSTEEEVRDMKNVPYREALGSLMWLQVATRPDLSYAVNLLSRF 1283
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A8H7C1Y1_AGABI (RNA-directed DNA polymerase n=5 Tax=Agaricus bisporus TaxID=5341 RepID=A0A8H7C1Y1_AGABI) HSP 1 Score: 73.6 bits (179), Expect = 5.210e-13 Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT-----KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
+ +KDLG+A + LG I RD N G + Q Y + + E F + T +P+ LS +DSP T+ EV +M+ +PYRE +LMW TRPD+S+A + L++F
Sbjct: 1178 YELKDLGEARFILGMKIERDTN-GNIRLSQRAYAERVLERFHMADAKPRSTPLPTSV---TLSINDSPSTEEEVRDMKNVPYREALGSLMWLQVATRPDLSYAVNLLSRF 1283
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A8H7EYE9_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7EYE9_AGABI) HSP 1 Score: 73.2 bits (178), Expect = 6.990e-13 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKT---SIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
+ +KDLG+A + LG I R+ G + Q Y + + + F ++ S P AG LS +DSP T+ E EM+ +PYRE +LMW TRPD+SFA + L++F
Sbjct: 1159 YELKDLGEAKFILGMKIERNEATGNIRLSQRAYSERILDRFHMSDANPRSTPLPAG-ITLSINDSPNTEEEKLEMKDVPYREALGSLMWLQVATRPDLSFAVNLLSRF 1265 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig83399.15978.1 >prot_H-elongata_contig83399.15978.1 ID=prot_H-elongata_contig83399.15978.1|Name=mRNA_H-elongata_contig83399.15978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKTSIPSback to top mRNA from alignment at H-elongata_contig83399:2356..2670- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig83399.15978.1 ID=mRNA_H-elongata_contig83399.15978.1|Name=mRNA_H-elongata_contig83399.15978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig83399:2356..2670- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig83399:2356..2670- >mRNA_H-elongata_contig83399.15978.1 ID=mRNA_H-elongata_contig83399.15978.1|Name=mRNA_H-elongata_contig83399.15978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig83399:2356..2670- (Himanthalia elongata Himel1 dioecious)back to top |