mRNA_H-elongata_contig83399.15978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83399.15978.1
Unique NamemRNA_H-elongata_contig83399.15978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 84.7 bits (208), Expect = 5.860e-17
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT--KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            F ++DLG   Y LG  ITR+R    L   Q QYI    E FG+T  K +   +     LSKS SPQT  EVEEM +IPY     +L++ ATMTRPDI++ A  LA+F
Sbjct:  308 FKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARF 414          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT)

HSP 1 Score: 82.8 bits (203), Expect = 2.920e-16
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT--KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            F +KD+GKA + LG  IT  ++   +T DQ  YI+ +   FG++  K S   +   + LSK+DSP   AE+E+M+Q+PY+E    LM+ +  TRPDISF  ++L++F
Sbjct: 1100 FRMKDMGKAKFCLGIKITETKSC--ITLDQQHYIEEILNKFGMSECKPSYTPMQHNQKLSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRF 1204          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A060SV79_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SV79_PYCCI)

HSP 1 Score: 81.3 bits (199), Expect = 1.000e-15
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKTSIPSVAGE--KALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            + + DLG   + LG  I+RD  AG L+  QH YI  +   F  T     S   +  + LSK+  P++ AEV  MR++PYRE   ALM+AA  TRPDI+FA   LA+F
Sbjct:  881 YKLTDLGPVSWLLGIKISRDLTAGTLSLSQHAYIDALLARFNFTDLKPVSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAISALMYAALGTRPDIAFAVSTLAQF 987          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: Q849C0_ASTYP (Reverse transcriptase (Fragment) n=1 Tax=Aster yellows phytoplasma TaxID=35779 RepID=Q849C0_ASTYP)

HSP 1 Score: 77.4 bits (189), Expect = 1.420e-15
Identity = 42/108 (38.89%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTK---TSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            F +KD+G A + LG  ITRDR    +  DQ  Y++++ + F + +    SIP   GE+ LSK  SP+T  E E+M+ +PY+E   +L++AA ++RPD+S+A   +++F
Sbjct:   57 FKMKDMGIAKFILGFRITRDRKNKKIFIDQRAYLESVLKRFNMDQCNPVSIPINVGER-LSKEQSPKTVEEAEKMKNVPYQEAVGSLLFAAQVSRPDLSYAVSCVSRF 163          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 79.3 bits (194), Expect = 4.790e-15
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKTSIPSVAGE--KALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            + I DLG   + LG  I+ D  AG L+  QH YI+ +   F  T     S+  +  + LSK+  P++ AEV  MR++PYRE   ALM+AA  TRPDI+FA   LA+F
Sbjct: 1019 YKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQF 1125          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A1Y1LYU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LYU4_PHOPY)

HSP 1 Score: 75.5 bits (184), Expect = 1.070e-13
Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGV---TKTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            F +KD+G+A + LG  ITRDR    +  DQ  Y++++ + F +        P++ GEK LS +  P ++ E E+M ++PY+E   +L++AA ++RPDISFA + ++++
Sbjct:  850 FKVKDIGEARFVLGMQITRDRKNKKIWLDQQSYVESLLKKFKMWDCNPVDTPALLGEK-LSINMCPNSEDEAEKMSRVPYQEAVGSLLFAAQVSRPDISFAVNNVSRY 956          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 73.9 bits (180), Expect = 1.700e-13
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 IKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT--KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            + DLG   + LG  I+RD  AG  +  QH YI  +   F  T  K     +   + LSK+  P++ AEV  MR++PYRE    LM+AA  T+PDI FA   LA+F
Sbjct:    1 MTDLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNFTDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQF 105          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A8H7F054_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F054_AGABI)

HSP 1 Score: 73.6 bits (179), Expect = 5.120e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT-----KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            + +KDLG+A + LG  I RD N G +   Q  Y + + E F +       T +P+      LS +DSP T+ EV +M+ +PYRE   +LMW    TRPD+S+A + L++F
Sbjct: 1178 YELKDLGEARFILGMKIERDTN-GNIRLSQRAYAERVLERFHMADAKPRSTPLPTSV---TLSINDSPSTEEEVRDMKNVPYREALGSLMWLQVATRPDLSYAVNLLSRF 1283          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A8H7C1Y1_AGABI (RNA-directed DNA polymerase n=5 Tax=Agaricus bisporus TaxID=5341 RepID=A0A8H7C1Y1_AGABI)

HSP 1 Score: 73.6 bits (179), Expect = 5.210e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVT-----KTSIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            + +KDLG+A + LG  I RD N G +   Q  Y + + E F +       T +P+      LS +DSP T+ EV +M+ +PYRE   +LMW    TRPD+S+A + L++F
Sbjct: 1178 YELKDLGEARFILGMKIERDTN-GNIRLSQRAYAERVLERFHMADAKPRSTPLPTSV---TLSINDSPSTEEEVRDMKNVPYREALGSLMWLQVATRPDLSYAVNLLSRF 1283          
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Match: A0A8H7EYE9_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7EYE9_AGABI)

HSP 1 Score: 73.2 bits (178), Expect = 6.990e-13
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKT---SIPSVAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAHQLAKF 315
            + +KDLG+A + LG  I R+   G +   Q  Y + + + F ++     S P  AG   LS +DSP T+ E  EM+ +PYRE   +LMW    TRPD+SFA + L++F
Sbjct: 1159 YELKDLGEAKFILGMKIERNEATGNIRLSQRAYSERILDRFHMSDANPRSTPLPAG-ITLSINDSPNTEEEKLEMKDVPYREALGSLMWLQVATRPDLSFAVNLLSRF 1265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83399.15978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E2LZP6_MONPE5.860e-1746.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
W4VRQ4_9DIPT2.920e-1641.12Putative retrovirus-related pol polyprotein from t... [more]
A0A060SV79_PYCCI1.000e-1542.99Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
Q849C0_ASTYP1.420e-1538.89Reverse transcriptase (Fragment) n=1 Tax=Aster yel... [more]
A0A060SPD4_PYCCI4.790e-1542.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1LYU4_PHOPY1.070e-1336.11Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A060S8R4_PYCCI1.700e-1340.95Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A8H7F054_AGABI5.120e-1338.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7C1Y1_AGABI5.210e-1338.18RNA-directed DNA polymerase n=5 Tax=Agaricus bispo... [more]
A0A8H7EYE9_AGABI6.990e-1338.89Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83399contigH-elongata_contig83399:2356..2670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog164328.Phyra85923
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.258465-CDS-H-elongata_contig83399:2355..26701622931241.258465-CDS-H-elongata_contig83399:2355..2670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83399 2356..2670 -
1691679756.0755932-CDS-H-elongata_contig83399:2355..26701691679756.0755932-CDS-H-elongata_contig83399:2355..2670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83399 2356..2670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83399.15978.1prot_H-elongata_contig83399.15978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83399 2356..2670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83399.15978.1

>prot_H-elongata_contig83399.15978.1 ID=prot_H-elongata_contig83399.15978.1|Name=mRNA_H-elongata_contig83399.15978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
FPIKDLGKAPYYLGCHITRDRNAGALTFDQHQYIQTMAECFGVTKTSIPS
VAGEKALSKSDSPQTDAEVEEMRQIPYREVAEALMWAATMTRPDISFAAH
QLAKF
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mRNA from alignment at H-elongata_contig83399:2356..2670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83399.15978.1 ID=mRNA_H-elongata_contig83399.15978.1|Name=mRNA_H-elongata_contig83399.15978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig83399:2356..2670- (Himanthalia elongata Himel1 dioecious)
TTCCCCATCAAGGATCTGGGGAAGGCTCCGTATTACCTGGGATGCCACAT CACGCGGGACCGGAACGCCGGGGCACTGACGTTCGACCAGCATCAGTACA TACAGACTATGGCGGAATGTTTTGGCGTGACGAAGACCAGCATCCCGTCC GTGGCAGGAGAAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGC AGAGGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAGTCGCTGAGGCCC TAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGCACAC CAACTGGCGAAATTC
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Coding sequence (CDS) from alignment at H-elongata_contig83399:2356..2670-

>mRNA_H-elongata_contig83399.15978.1 ID=mRNA_H-elongata_contig83399.15978.1|Name=mRNA_H-elongata_contig83399.15978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig83399:2356..2670- (Himanthalia elongata Himel1 dioecious)
TTCCCCATCAAGGATCTGGGGAAGGCTCCGTATTACCTGGGATGCCACAT
CACGCGGGACCGGAACGCCGGGGCACTGACGTTCGACCAGCATCAGTACA
TACAGACTATGGCGGAATGTTTTGGCGTGACGAAGACCAGCATCCCGTCC
GTGGCAGGAGAAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGC
AGAGGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAGTCGCTGAGGCCC
TAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGCACAC
CAACTGGCGAAATTCTTCCCCATCAAGGATCTGGGGAAGGCTCCGTATTA
CCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGGCACTGACGTTCG
ACCAGCATCAGTACATACAGACTATGGCGGAATGTTTTGGCGTGACGAAG
ACCAGCATCCCGTCCGTGGCAGGAGAAAAAGCCCTTTCGAAATCAGACAG
CCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCTACCGAG
AAGTCGCTGAGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATT
TCATTCGCTGCACACCAACTGGCGAAATTC
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