mRNA_H-elongata_contig83334.15972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83334.15972.1
Unique NamemRNA_H-elongata_contig83334.15972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: D8LQB9_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.180e-34
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    4 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGGT 195
            +RF IAPRWLADRLLCARYAHLPL NIGADAPCAMADAFFGRLLRHNRHVLWASE S+PDLGGT
Sbjct:  230 QRFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFFGRLLRHNRHVLWASETSRPDLGGT 293          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A6H5J9K7_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.590e-34
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1
Query:    4 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 192
            +RF IAPRWLADRLLCARYAHLPL NIGADAPCAMADAFFGRLLRHNRHVLWASE S+PDLGG
Sbjct:  810 QRFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFFGRLLRHNRHVLWASETSRPDLGG 872          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.340e-20
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 192
            ++RFL  P WL DRL  ARY+HLPLGN+G D    MAD   GRLL  NRHVLWASE ++PDLGG
Sbjct: 1685 IQRFLCMPGWLQDRLQAARYSHLPLGNLGLDPQRTMADVLLGRLLHGNRHVLWASEGTRPDLGG 1748          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A7S3M6C7_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6C7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.600e-18
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    4 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLG 189
            +RFLI PRW  DRL  ARYAH+PL N+G DA   M D  F R L HNRH+LW SE + PDLG
Sbjct:  458 QRFLIFPRWFDDRLTAARYAHIPLCNLGTDALTTMIDVTFSRQLLHNRHLLWCSEGTGPDLG 519          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: F0YN07_AURAN (DNA polymerase epsilon catalytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN07_AURAN)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-14
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 192
            LE     P WLA+R     + ++PLGN+GA     +ADA FGR LR +RHVLWASEA  PDLGG
Sbjct: 1646 LEGIARVPGWLAERRTLGAFGNVPLGNLGAAPLVTVADAVFGRELRKHRHVLWASEADAPDLGG 1709          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A7S3NK85_9STRA (DNA polymerase epsilon catalytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK85_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-14
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLG 189
            ER    P WL  R   AR+ ++P+GN+G D    +AD  F RLLR+NRH+LWASE+ +PDLG
Sbjct: 1717 ERLTACPAWLEARFATARFGNVPVGNLGDDPLIRVADTAFARLLRNNRHLLWASESPQPDLG 1778          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: UPI000711C1CA (putative POL2 DNA polymerase epsilon n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C1CA)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-12
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   34 ADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLG 189
            ADRL CARYA +PLGN+  D    + D  FGRLL  NRH+LW+S  + PDLG
Sbjct:  838 ADRLRCARYAEIPLGNLATDLGVQLNDVSFGRLLLANRHILWSSPENMPDLG 889          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: UPI001F0411E6 (LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0411E6)

HSP 1 Score: 69.7 bits (169), Expect = 2.440e-12
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 192
            ++ +L +  WL  +L  AR+ H+PLGNI ADA     D F+ R L  N HVLW S   +PDLGG
Sbjct: 1634 IQHYLYSDTWLQAQLEHARFCHIPLGNITADAAAFACDVFYARNLEKNNHVLWLSPGDRPDLGG 1697          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A7D9EAA6_PARCT (DNA polymerase epsilon catalytic subunit n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EAA6_PARCT)

HSP 1 Score: 67.4 bits (163), Expect = 1.570e-11
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 192
            ++ +L +  WL  ++  ARY H+P+GNI ADA    +D FF R L  + HV+W S   +PDLGG
Sbjct:  340 IQHYLYSDTWLQAQVEHARYCHIPVGNISADAAAFASDVFFARNLGKSNHVVWLSPGERPDLGG 403          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A196SQL8_BLAHN (DNA polymerase epsilon catalytic subunit n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SQL8_BLAHN)

HSP 1 Score: 67.0 bits (162), Expect = 2.170e-11
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   37 DRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 192
            DRL  ARYA +PL N+G D   AM D  +GRLL+ N+HVLW S  + PD GG
Sbjct: 1600 DRLQSARYAQVPLCNLGTDLGTAMLDVCYGRLLQRNKHVLWCSREATPDFGG 1651          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LQB9_ECTSI1.180e-3492.19DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A6H5J9K7_9PHAE5.590e-3492.06DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
W7TVX1_9STRA1.340e-2064.06DNA-directed DNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A7S3M6C7_9STRA3.600e-1861.29DNA polymerase epsilon catalytic subunit (Fragment... [more]
F0YN07_AURAN4.210e-1454.69DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
A0A7S3NK85_9STRA4.210e-1451.61DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
UPI000711C1CA2.420e-1257.69putative POL2 DNA polymerase epsilon n=1 Tax=Blast... [more]
UPI001F0411E62.440e-1246.88LOW QUALITY PROTEIN: DNA polymerase epsilon cataly... [more]
A0A7D9EAA6_PARCT1.570e-1143.75DNA polymerase epsilon catalytic subunit n=1 Tax=P... [more]
A0A196SQL8_BLAHN2.170e-1155.77DNA polymerase epsilon catalytic subunit n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83334contigH-elongata_contig83334:899..1096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.1e-29
Seed eggNOG ortholog2880.D8LQB9
Preferred namePOLE1
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG1798@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.6752076-CDS-H-elongata_contig83334:898..10961622931240.6752076-CDS-H-elongata_contig83334:898..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83334 899..1096 -
1691679755.8966286-CDS-H-elongata_contig83334:898..10961691679755.8966286-CDS-H-elongata_contig83334:898..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83334 899..1096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83334.15972.1prot_H-elongata_contig83334.15972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83334 899..1096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83334.15972.1

>prot_H-elongata_contig83334.15972.1 ID=prot_H-elongata_contig83334.15972.1|Name=mRNA_H-elongata_contig83334.15972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRH
VLWASEASKPDLGGT*
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mRNA from alignment at H-elongata_contig83334:899..1096-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83334.15972.1 ID=mRNA_H-elongata_contig83334.15972.1|Name=mRNA_H-elongata_contig83334.15972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig83334:899..1096- (Himanthalia elongata Himel1 dioecious)
CTGGAAAGGTTTTTGATCGCGCCGCGTTGGCTGGCCGATCGGCTCCTGTG TGCGAGGTATGCCCACCTGCCCCTTGGTAATATTGGAGCAGACGCGCCGT GCGCAATGGCGGATGCGTTCTTCGGACGGCTGCTGAGGCACAACCGGCAC GTGCTGTGGGCATCGGAGGCGTCGAAGCCAGACCTAGGCGGCACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig83334:899..1096-

>mRNA_H-elongata_contig83334.15972.1 ID=mRNA_H-elongata_contig83334.15972.1|Name=mRNA_H-elongata_contig83334.15972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig83334:899..1096- (Himanthalia elongata Himel1 dioecious)
CTGGAAAGGTTTTTGATCGCGCCGCGTTGGCTGGCCGATCGGCTCCTGTG
TGCGAGGTATGCCCACCTGCCCCTTGGTAATATTGGAGCAGACGCGCCGT
GCGCAATGGCGGATGCGTTCTTCGGACGGCTGCTGAGGCACAACCGGCAC
GTGCTGTGGGCATCGGAGGCGTCGAAGCCAGACCTAGGCGGCACATAACT
GGAAAGGTTTTTGATCGCGCCGCGTTGGCTGGCCGATCGGCTCCTGTGTG
CGAGGTATGCCCACCTGCCCCTTGGTAATATTGGAGCAGACGCGCCGTGC
GCAATGGCGGATGCGTTCTTCGGACGGCTGCTGAGGCACAACCGGCACGT
GCTGTGGGCATCGGAGGCGTCGAAGCCAGACCTAGGCGGCACATAA
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