prot_H-elongata_contig83334.15972.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83334.15972.1
Unique Nameprot_H-elongata_contig83334.15972.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: D8LQB9_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.180e-34
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0
Query:    2 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGGT 65
            +RF IAPRWLADRLLCARYAHLPL NIGADAPCAMADAFFGRLLRHNRHVLWASE S+PDLGGT
Sbjct:  230 QRFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFFGRLLRHNRHVLWASETSRPDLGGT 293          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A6H5J9K7_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.590e-34
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0
Query:    2 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 64
            +RF IAPRWLADRLLCARYAHLPL NIGADAPCAMADAFFGRLLRHNRHVLWASE S+PDLGG
Sbjct:  810 QRFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFFGRLLRHNRHVLWASETSRPDLGG 872          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.340e-20
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 64
            ++RFL  P WL DRL  ARY+HLPLGN+G D    MAD   GRLL  NRHVLWASE ++PDLGG
Sbjct: 1685 IQRFLCMPGWLQDRLQAARYSHLPLGNLGLDPQRTMADVLLGRLLHGNRHVLWASEGTRPDLGG 1748          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A7S3M6C7_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6C7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.600e-18
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    2 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLG 63
            +RFLI PRW  DRL  ARYAH+PL N+G DA   M D  F R L HNRH+LW SE + PDLG
Sbjct:  458 QRFLIFPRWFDDRLTAARYAHIPLCNLGTDALTTMIDVTFSRQLLHNRHLLWCSEGTGPDLG 519          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: F0YN07_AURAN (DNA polymerase epsilon catalytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN07_AURAN)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-14
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 64
            LE     P WLA+R     + ++PLGN+GA     +ADA FGR LR +RHVLWASEA  PDLGG
Sbjct: 1646 LEGIARVPGWLAERRTLGAFGNVPLGNLGAAPLVTVADAVFGRELRKHRHVLWASEADAPDLGG 1709          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A7S3NK85_9STRA (DNA polymerase epsilon catalytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK85_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-14
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    2 ERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLG 63
            ER    P WL  R   AR+ ++P+GN+G D    +AD  F RLLR+NRH+LWASE+ +PDLG
Sbjct: 1717 ERLTACPAWLEARFATARFGNVPVGNLGDDPLIRVADTAFARLLRNNRHLLWASESPQPDLG 1778          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: UPI000711C1CA (putative POL2 DNA polymerase epsilon n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C1CA)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-12
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0
Query:   12 ADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLG 63
            ADRL CARYA +PLGN+  D    + D  FGRLL  NRH+LW+S  + PDLG
Sbjct:  838 ADRLRCARYAEIPLGNLATDLGVQLNDVSFGRLLLANRHILWSSPENMPDLG 889          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: UPI001F0411E6 (LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0411E6)

HSP 1 Score: 69.7 bits (169), Expect = 2.440e-12
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 64
            ++ +L +  WL  +L  AR+ H+PLGNI ADA     D F+ R L  N HVLW S   +PDLGG
Sbjct: 1634 IQHYLYSDTWLQAQLEHARFCHIPLGNITADAAAFACDVFYARNLEKNNHVLWLSPGDRPDLGG 1697          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A7D9EAA6_PARCT (DNA polymerase epsilon catalytic subunit n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EAA6_PARCT)

HSP 1 Score: 67.4 bits (163), Expect = 1.570e-11
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 0
Query:    1 LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 64
            ++ +L +  WL  ++  ARY H+P+GNI ADA    +D FF R L  + HV+W S   +PDLGG
Sbjct:  340 IQHYLYSDTWLQAQVEHARYCHIPVGNISADAAAFASDVFFARNLGKSNHVVWLSPGERPDLGG 403          
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Match: A0A196SQL8_BLAHN (DNA polymerase epsilon catalytic subunit n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SQL8_BLAHN)

HSP 1 Score: 67.0 bits (162), Expect = 2.170e-11
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0
Query:   13 DRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRHVLWASEASKPDLGG 64
            DRL  ARYA +PL N+G D   AM D  +GRLL+ N+HVLW S  + PD GG
Sbjct: 1600 DRLQSARYAQVPLCNLGTDLGTAMLDVCYGRLLQRNKHVLWCSREATPDFGG 1651          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83334.15972.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LQB9_ECTSI1.180e-3492.19DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A6H5J9K7_9PHAE5.590e-3492.06DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
W7TVX1_9STRA1.340e-2064.06DNA-directed DNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A7S3M6C7_9STRA3.600e-1861.29DNA polymerase epsilon catalytic subunit (Fragment... [more]
F0YN07_AURAN4.210e-1454.69DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
A0A7S3NK85_9STRA4.210e-1451.61DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
UPI000711C1CA2.420e-1257.69putative POL2 DNA polymerase epsilon n=1 Tax=Blast... [more]
UPI001F0411E62.440e-1246.88LOW QUALITY PROTEIN: DNA polymerase epsilon cataly... [more]
A0A7D9EAA6_PARCT1.570e-1143.75DNA polymerase epsilon catalytic subunit n=1 Tax=P... [more]
A0A196SQL8_BLAHN2.170e-1155.77DNA polymerase epsilon catalytic subunit n=1 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013697DNA polymerase epsilon, catalytic subunit A, C-terminalPFAMPF08490DUF1744coord: 2..65
e-value: 2.2E-18
score: 66.0
IPR029703DNA polymerase epsilon catalytic subunitPANTHERPTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 2..64
NoneNo IPR availablePANTHERPTHR10670:SF0DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 2..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83334contigH-elongata_contig83334:899..1096 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83334.15972.1mRNA_H-elongata_contig83334.15972.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83334 899..1096 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83334.15972.1 ID=prot_H-elongata_contig83334.15972.1|Name=mRNA_H-elongata_contig83334.15972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
LERFLIAPRWLADRLLCARYAHLPLGNIGADAPCAMADAFFGRLLRHNRH
VLWASEASKPDLGGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013697DNA_pol_e_suA_C
IPR029703POL2