prot_H-elongata_contig12071.1591.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12071.1591.1
Unique Nameprot_H-elongata_contig12071.1591.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
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BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.290e-13
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0 
Query:    8 SLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYE 56
            +L +A +  T D   T PCRFP DGGRSELAR PACRLVLSIHDELLYE
Sbjct: 2221 TLSSALASGTADA--TVPCRFPRDGGRSELARRPACRLVLSIHDELLYE 2267
[Close]
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.900e-12
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 
Query:   23 TPPCRFPEDGGRSELARNPACRLVLSIHDELLYE 56
            T PCRFP DGGRS+LAR PACRLVLSIHDELLYE
Sbjct:  434 TVPCRFPRDGGRSQLARRPACRLVLSIHDELLYE 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L306_9PHAE3.290e-1371.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM14_ECTSI3.900e-1288.24DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12071contigH-elongata_contig12071:3406..4135 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12071.1591.1mRNA_H-elongata_contig12071.1591.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12071 2282..5969 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12071.1591.1 ID=prot_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIH
DELLYENAVSSS*
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