mRNA_H-elongata_contig12071.1591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12071.1591.1
Unique NamemRNA_H-elongata_contig12071.1591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 6.930e-78
Identity = 152/242 (62.81%), Postives = 181/242 (74.79%), Query Frame = 1
Query:    1 LTHRAAAQTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSL----RNACSRDTVDG-------EYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDV 693
            +T     QTK+VVYGVLYGQSA+ L PQL +SRP A+KIR+TVL  +PKL +F+++VK++CK+ G+VETLLGRRRYLP INS+D  ER+RAERQAANT  QGSAADLLKLAATNVAARLE+C+WMS+   + +    RNA +  T+         + T PCRFP DGGRSELAR PACRLVLSIHDELLYE        VL+PH  EVAQ+VK+CMEGA SL VPLVA PR G  W SM  +
Sbjct: 2077 ITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLNTYPKLTEFLKKVKEDCKECGYVETLLGRRRYLPQINSTDKAERSRAERQAANTTTQGSAADLLKLAATNVAARLERCEWMSRPAAKPICTPSRNAAAGGTLSSALASGTADATVPCRFPRDGGRSELARRPACRLVLSIHDELLYE--------VLEPHVAEVAQIVKACMEGACSLSVPLVAHPRWGTKWGSMAPM 2310          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 3.950e-65
Identity = 124/193 (64.25%), Postives = 148/193 (76.68%), Query Frame = 1
Query:    1 LTHRAAAQTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSL-------------RNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYE 540
            +T     QTK+VVYGVLYGQSA+ L PQL +SRP A+KIR+TVLK FPKL +F+++VK++CK+ G+VETLLGRRRYLP INS+D  ER+RAERQAANT  QGSAADLLKLAATNVAARLE+C+WMS+   + +              +A +  T D   T PCRFP DGGRS+LAR PACRLVLSIHDELLYE
Sbjct:  277 ITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTFPKLTEFLKKVKEDCKECGYVETLLGRRRYLPQINSTDKAERSRAERQAANTTTQGSAADLLKLAATNVAARLERCEWMSRPAGKPICTPPPNAAAGGTSSSALASGTADA--TVPCRFPRDGGRSQLARRPACRLVLSIHDELLYE 467          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A7S3XVL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVL9_HETAK)

HSP 1 Score: 165 bits (417), Expect = 6.540e-42
Identity = 96/225 (42.67%), Postives = 124/225 (55.11%), Query Frame = 1
Query:   28 KVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSAT 702
            K V YG+LYG     L  +LGVS   A +++   L+ +P ++DFIRR K  C+ RG+VETLLG RRYLP I S    +R+RAERQA NTVCQGS ADLLKLA  N+  +L K       E Q  R       V      P             + P CRL+L+IHDEL+YE  +           +EVA+++K CMEGA+ L VPL    + G+ W S+ D   T
Sbjct:   88 KQVAYGILYGAGPNALRQELGVSYQEAERMQRRFLETYPGVQDFIRRAKAECRARGYVETLLGHRRYLPDIRSDRPADRSRAERQAVNTVCQGSGADLLKLAMINIHHKLRKVLHAHVGESQHQRRRSIGFPVSASDWDP-------------QKPRCRLLLTIHDELIYEVGIGD--------VKEVAKIIKECMEGAVQLDVPLTVSLQYGRRWGSLRDAPDT 291          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: W7U5L3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5L3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 6.730e-30
Identity = 83/221 (37.56%), Postives = 119/221 (53.85%), Query Frame = 1
Query:   22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASM 684
            + K + Y VLYGQS    A Q  +S   A K+  + L  +P +R F++  KD CK  G++ETLL RRR+LP I+S +  ER +AERQ+ N++CQGSAA+++KLA  N+ ++LE                             CR  +D     L     CRLVL IHDEL++E        V +    EV Q++K CMEGA+ L VPL    ++G +W ++
Sbjct: 2033 EAKQLAYAVLYGQSIAATAQQFAISTAEADKLHVSFLNTYPGIRKFLQESKDFCKTHGYIETLLRRRRHLPGIHSRNIYERLQAERQSVNSICQGSAAEVIKLAMINIHSKLEGLH--------------------------CRIKKDS----LGDVRDCRLVLQIHDELIFE--------VKEQMVTEVVQIMKDCMEGALQLNVPLKVHVKVGASWGAL 2215          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A7R9HNF3_9NEOP (DNA-directed DNA polymerase n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9HNF3_9NEOP)

HSP 1 Score: 125 bits (315), Expect = 1.110e-28
Identity = 81/225 (36.00%), Postives = 118/225 (52.44%), Query Frame = 1
Query:   22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVS 696
            + K + YG++YG  A  LA QL V    A     +  KA+P ++ F+      C+++G+VETL GRRRYLP I  S++ +++ AERQA N+  QGSAAD+ K A   V  RL K           + +   R T D     PC   +  G+ E     A  LVL +HDELLYE        V   H  E  +++KS ME A++L V L  + + G +W ++ ++S
Sbjct:   55 RAKQICYGMIYGMGARALAEQLEVEESVAVNFMASFNKAYPGVKKFLSETIAKCRRQGYVETLRGRRRYLPAITGSNSLKKSHAERQAVNSTIQGSAADVAKRAMVLVEQRLSK-----------ILSTSPRKTYD-----PCTRVK--GKREQTNERAASLVLHLHDELLYE--------VSDKHVMEAVRIIKSGMEEAVNLSVKLPVKVKTGNSWGALQEIS 253          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A397YFG0_BRACM (POLAc domain-containing protein n=2 Tax=Brassica TaxID=3705 RepID=A0A397YFG0_BRACM)

HSP 1 Score: 129 bits (324), Expect = 1.390e-28
Identity = 81/226 (35.84%), Postives = 124/226 (54.87%), Query Frame = 1
Query:   22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSA 699
            QTK ++YG+LYG  A  LA QL  S   A +   +   +FP +  ++      C+++G+++TL GRRR+L  I   +AKE+++A+RQA N+VCQGSAAD++K+A  N+          S   E    +A S  T                R  + +   CR++L +HDEL+ E        V   +A+E A +++S ME A+SLLVPL  + +IGKTW S+  + A
Sbjct:  200 QTKRLIYGILYGMGANTLAEQLECSSDEAKEKIRSFKSSFPAVTSWLNETVSFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSVCQGSAADIIKIAMINI---------YSAISEDVNTSASSSSTE--------------ARCHMLKG-RCRILLQVHDELVLE--------VDPSYAKEAAMLLQSSMENAVSLLVPLHVKLKIGKTWGSLEPLQA 393          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A0V0ILC0_SOLCH (Putative ovule protein n=2 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0ILC0_SOLCH)

HSP 1 Score: 129 bits (325), Expect = 2.340e-28
Identity = 82/227 (36.12%), Postives = 131/227 (57.71%), Query Frame = 1
Query:   22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSAT 702
            QTK +VYG+LYG  A+ LA Q+  S   A +  E+  ++FP +  +++    +C+++G++ETL GR+R+L  IN  ++KE+++A+RQA N++CQGSAAD++K+A  N+ + L+         E+SL    S   VD       +F    GR        CR++L +HDEL+ E   S         A+E   +++  ME A+SLLVPL  + +IG TW S+    A+
Sbjct:  251 QTKRLVYGILYGMGAKSLAEQIDCSADEAAERIESFKRSFPGVASWLQEAVTSCREKGYIETLKGRKRFLAKINFGNSKEKSKAQRQAVNSICQGSAADIIKIAMINIHSVLDHF-------EKSL----SHSAVDE------KFHVLKGR--------CRIILQVHDELVLEADPSV--------AKEAGLLLQMSMENAVSLLVPLHVKLKIGSTWGSLEPFQAS 444          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A816XLI8_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816XLI8_BRANA)

HSP 1 Score: 133 bits (335), Expect = 4.410e-28
Identity = 84/226 (37.17%), Postives = 125/226 (55.31%), Query Frame = 1
Query:   22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSA 699
            QTK ++YG+LYG  A  LA QL  S   A +   +   +FP +  ++      C+++G+++TL GRRR+L  I   +AKE+A+A+RQA N+VCQGSAAD++K+A  N+          S   E S       DT     +   RF    GR        CR++L +HDEL+ E        V   +A+E A +++S ME A+SLLVPL  + ++GKTW S+  + A
Sbjct: 2167 QTKRLIYGILYGMGANRLAEQLECSSDEAKEKIRSFKSSFPAVTSWLNETVSFCQEKGYIQTLKGRRRFLSKIKFGNAKEKAKAQRQAVNSVCQGSAADIIKIAMINI---------YSAISEDS-------DTAASSSSTETRFHALKGR--------CRILLQVHDELVLE--------VDPSYAKEAAMLLQSSMENAVSLLVPLHVKLKVGKTWGSLEPLQA 2360          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A673ZWZ2_SALTR (DNA-directed DNA polymerase n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673ZWZ2_SALTR)

HSP 1 Score: 133 bits (334), Expect = 5.850e-28
Identity = 80/224 (35.71%), Postives = 122/224 (54.46%), Query Frame = 1
Query:   22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDV 693
            Q K + YG++YG  A+ L  Q+G+    A    E+    +  +  F++    +C K+GFV+TLLGRRRYLP+IN++    +  AERQA NT  QGSAAD++KLA  N+             +  +L + C R     EYT  C +    GR+ + R+     +L +HDEL+YE A        +    +VAQ+VK  ME A+ L V L A+ ++G +W ++ D+
Sbjct: 2202 QAKQICYGIIYGMGAKSLGEQMGIEEDDAGAYIESFKDRYTGIHRFLKETVRSCVKKGFVQTLLGRRRYLPNINTNGYTRKQVAERQAVNTTVQGSAADIVKLATVNI------------QQLNTLSSRCHR-----EYTELCLWSRGHGRA-VQRHRGAFFILQLHDELIYETA--------EEDLIQVAQIVKREMESAVKLYVKLKAKVKVGPSWGNLQDL 2399          
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A812UX74_SYMMI (TEB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UX74_SYMMI)

HSP 1 Score: 122 bits (307), Expect = 6.020e-28
Identity = 80/193 (41.45%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   28 KVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVK 606
            K + Y +LYG     +A   G S P A  +    +  +P ++ F+ +VK++C+ +G+VETLLGRRR+L  I+S++ K+RARAERQA NTVCQGSAADL+KLA  N+  RL         EE   R           Y   C +P   G +  AR    RLVL +HDEL++E        V + H  EVA VVK
Sbjct:   61 KQICYALLYGAGPAKVAADAGCSIPEAEGLMRGFMTCYPGIKTFMNQVKNSCRSKGYVETLLGRRRHLRGISSANRKDRARAERQAVNTVCQGSAADLIKLAMINIQHRL--------VEEFGSRG----------YHGHCSYP---GGALYARMDCVRLVLQVHDELVFE--------VEEEHLHEVACVVK 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L306_9PHAE6.930e-7862.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM14_ECTSI3.950e-6564.25DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A7S3XVL9_HETAK6.540e-4242.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7U5L3_9STRA6.730e-3037.56Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9HNF3_9NEOP1.110e-2836.00DNA-directed DNA polymerase n=1 Tax=Timema moniken... [more]
A0A397YFG0_BRACM1.390e-2835.84POLAc domain-containing protein n=2 Tax=Brassica T... [more]
A0A0V0ILC0_SOLCH2.340e-2836.12Putative ovule protein n=2 Tax=Solanum chacoense T... [more]
A0A816XLI8_BRANA4.410e-2837.17(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A673ZWZ2_SALTR5.850e-2835.71DNA-directed DNA polymerase n=1 Tax=Salmo trutta T... [more]
A0A812UX74_SYMMI6.020e-2841.45TEB protein (Fragment) n=1 Tax=Symbiodinium microa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12071contigH-elongata_contig12071:2282..5969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D7FM14
Preferred namePOLQ
KEGG koko:K02349
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004386,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009933,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0036297,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048507,GO:0048519,GO:0048523,GO:0048532,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051259,GO:0051260,GO:0051301,GO:0051575,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1902749,GO:1990067,GO:2000011,GO:2000026,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size2395
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12071.1591.1prot_H-elongata_contig12071.1591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12071 3406..4135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.7207944-UTR-H-elongata_contig12071:2281..24751622929708.7207944-UTR-H-elongata_contig12071:2281..2475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 2282..2475 +
1691679127.4165819-UTR-H-elongata_contig12071:2281..24751691679127.4165819-UTR-H-elongata_contig12071:2281..2475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 2282..2475 +
1622929708.73671-UTR-H-elongata_contig12071:2969..31281622929708.73671-UTR-H-elongata_contig12071:2969..3128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 2970..3128 +
1691679127.428031-UTR-H-elongata_contig12071:2969..31281691679127.428031-UTR-H-elongata_contig12071:2969..3128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 2970..3128 +
1622929708.7575881-UTR-H-elongata_contig12071:3386..34051622929708.7575881-UTR-H-elongata_contig12071:3386..3405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 3387..3405 +
1691679127.438993-UTR-H-elongata_contig12071:3386..34051691679127.438993-UTR-H-elongata_contig12071:3386..3405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 3387..3405 +
1622929708.805177-UTR-H-elongata_contig12071:4135..59691622929708.805177-UTR-H-elongata_contig12071:4135..5969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 4136..5969 +
1691679127.4722834-UTR-H-elongata_contig12071:4135..59691691679127.4722834-UTR-H-elongata_contig12071:4135..5969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 4136..5969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.7744334-CDS-H-elongata_contig12071:3405..35731622929708.7744334-CDS-H-elongata_contig12071:3405..3573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 3406..3573 +
1691679127.4540923-CDS-H-elongata_contig12071:3405..35731691679127.4540923-CDS-H-elongata_contig12071:3405..3573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 3406..3573 +
1622929708.7889817-CDS-H-elongata_contig12071:4114..41351622929708.7889817-CDS-H-elongata_contig12071:4114..4135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 4115..4135 +
1691679127.4635978-CDS-H-elongata_contig12071:4114..41351691679127.4635978-CDS-H-elongata_contig12071:4114..4135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 4115..4135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12071.1591.1

>prot_H-elongata_contig12071.1591.1 ID=prot_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIH
DELLYENAVSSS*
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mRNA from alignment at H-elongata_contig12071:2282..5969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12071.1591.1 ID=mRNA_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3688bp|location=Sequence derived from alignment at H-elongata_contig12071:2282..5969+ (Himanthalia elongata Himel1 dioecious)
TTAACCCACCGTGCTGCTGCCCAGACCAAGGTCGTTGTGTATGGAGTTCT GTACGGCCAATCAGCGGAGGGGCTCGCCCCACAGCTGGGCGTGAGCCGGC CCCGGGCTTGGAAGATCCGGGAGACGGTGCTGAAGGCGTTTCCCAAGCTT AGAGATTTTATCCGTAGGGTGAAGGACAACTGCAAGAAGCGTGGGTGAGC TTGTCAAGGAGGGGTGTTTTCCGGGCGGGATAGAAGGGCTGCAGAGAGTT TTCCCCCCAAACAACGCCTCATCGCGATTGATGTTTTGCTGCTGTTGTAC AGGCGTTTTCCCCGTTACAGCCGCAGGCCCGTTTTTCTTGATTCACTGTT ATCTTGGGGAATTTCGTGCCCCACACGTTGATATTTACTTGCCCTATTAT CATCCACTACGATATGCTCTTCTATGGTAATGTCTCAACCCGGCTAGTTT TCATATGAGGTTTCCCCCTCCCCCCCCCCTCCTCCCCCTCTCCCCCAAGG TACACTCTATACAGTCGAGGAGAGCTGTCCACCCCCTGCCCCCTCTTTTG TACAGCCGTTGCGCGGCCTCTTGACAAAAGACTTTGGACTTTTTTCGAAG TTCTCTTTCCCTCTCCACTCTGACCGAGTGTCTTTGTCCCCCCCCCTATC TCGATCTCCGCGGCCTACGATGCCTTGGCACGTCACAGCTTCGTGGAAAC CCTTCTGGGTCGGAGGCGTTACCTCCCCCATATAAATTCCTCTGACGCCA AGGAGAGGGCCAGAGCGGAAAGGCAGGCGGCCAACACGGTGTGCCAGGGA TCCGCGGCAGATCTTCTCAAGCTTGCTGCGACCAACGTAGCTGCCAGGTA AAACCGCTCTTGAGCGCGACGTGTTCGCGCGCCTGCGTCTTAGCGTACGC GGGCTCTCTCGCGCGTTTTTGTTTCGTTGTACCCATAATATTTTCTCACT AAAAAACGTTGAAGAATCGATCCGATCGATAAAGGTTACTACTTGGAGGA CGGAGAAGAAGCAGCGCTCTCGACGAAGTCCCTCTCCCCCTCCCTTCCCT CGATGACACGCCTACTACCGTATCAAATTCCCTCGTCCATGATGTGCCAC GGTAGGCTTGAAAAGTGCAAGTGGATGTCCCAGACGGAAGAGCAGTCCCT GCGTAACGCTTGCTCTCGAGACACCGTCGACGGCGAGTATACCCCTCCTT GTCGGTTTCCTGAGGACGGTGGGAGGTCGGAGCTGGCGAGAAATCCTGCC TGTCGGCTGGTCCTGAGCATCCACGATGAGCTTCTCTACGAGGTGCGCGG TCTACGCACAAATACGCCATAGGAGATTTTCGATCTTGGTTGGATTGATT GATCGAGTCATGGTGCCTCACGGTTGTTGTTTCGAAGGACCACGATGACA CAGCTCTAGTCTTTGCACGTAACTCATTACTTATTTCGTAATTCCACTAG TTATTATTCTGTCATCACGGAAGAGTCCCCTCGCTTTTTACTTCGGGTTT CGTTTTTCCATGGAATAATGAAGGATAGGAGGACGGGGTTTGGGGCGCAG GGAGCTGGAATGACAGTATCCTCTCGTCCTTTCAGAAAGCAGAGAATTAT ACATGTATGGTCTCACTTTCAGCAGAGTAAGATCAACCGGATTTGGTTGC CTTCGGTTCGTGGTCAGCTGATCTTGGAAAATAATTTTCCCTCTCCCCGT TCGAGGAAAAAAATGTAAGAGATAGTCGGGAATCTTGTCACGAGCCTCCG CGATCTTGACACGTGTTGTCACAGAGTGCGGTGAGAGCTCTTATGATGCG CGTCGTGTGACATGTGCACCACTGACCTAGGAGAATGCTGTGAGTTCGTC TTGACAGGTGCTCCAGCCGCACGCGGAAGAAGTTGCGCAGGTGGTGAAGT CGTGCATGGAAGGAGCCATATCGTTGTTGGTCCCACTGGTGGCTCAACCG CGTATCGGGAAGACGTGGGCGAGCATGACTGACGTATCGGCGACCGGATA ACCATCGCATACAGCAACCATCTTTGGCGGTTTCATAGTTGGATGACATC CGCGGGATGGAGGCGCGGCACAGTTTTTTTGTTTCTATACGTTTTCGTGG AGTAGTTGTGCGTTAATGCCATGTGTGTATTGGGGCGGGGAAGGGAATGT CGTTTAAAAGATGGTGCTACGCGTGAAGCACTGCCATTAATTACCCTTGG GAAACATGCCTGGTATTATTAGCGCGTGAAATATGTACGGTAGGTATATA TATATATATATATGTATATGAATTCTGCGGCAGGATTAAGGGAGGTCTTG GGGTTCTGGTTGTCGCTGCTTTAAAAGAAAGGGTTCTGTCTCGATACTGT AAACGAGTAAGTATGCGCCTGTATTGTGGAAACCCCCCACCCATGCCTAC TGGGAGAGACTTGTCTGCCCATTATTCTCGTCTCCTCTCGCACGCAAGGC GCTCAACATCCAAAACGGTTACATATTATTAATATAATCATTAGTCTAAG CCAGTGCCAGCGCTGGTTGATCTACAGAGAAGGTATCCCAAGGGATTAGT CGGGTATCCGGAGGCGTTCGCACCCTTACTAATATACTACGTCTACTACT ACTACCTCTTATTCTACGCCGAGTAGTTGAAGACACGCCAACCCGAAGGT CCACCATTCTAGCCAAATGCACAGCAAACGTAACATAACTATATATATAT AGAGCGAGAGTTATATTTACATCATGAGAGGCTTTCTTCCCTCGACCGGG GGGGTAGGACCGACAAAACTCGACTGCGTGCGACAGGAAGCTTACCATCT CTAGCTCTCTAGCTCAAGCTCCGTAGACAAGTCGGTGTTATGTTACGCTA CGGTTGACTACGTGACAAAGTTTTCTCTGCCCCCGCTTGATGTCCCTCTA ACCGCTAACCGGTGTGTATGTGTGTGGGGGGTAGGGGGTTCGGGTCGCTC TCGGACTCTTGAAAACGATATGTGAAAAAAAAGACACCACGTAAAATCAT GTCCAAAATCCGAGGTGTCTTGTGTTTTGCCGCGTACGAAACTCGAAGCA GCGGTGGAAAAATGTCGCAGAGACGCCCATCCCTGATGGCCTCTGGGGTT TCTCTGAGGGGTTTTGTATCCTTCCAACCAAGGTAGCATCCACCCCCCAC TTTCGCCACTTCGACAGGACCAAAAAAAGAACGAAAACTCCTGGCAACAC CAAGGCCCATTGAGTCACACCACGCAGCCCTGCTTGTCAACCTCAATCTC CACCCACGACAAGGCGTGTTTGCTGGTGTGCACCTAGAACGAGAGGGGGG CAAGGCGCGCGAAAACACGGAGGGCGGATCGATTGCCCGCTCGACCTCCC GAGATTCCCATTCTTTTCCGTTACCGCCATATGCGCTGGTGGATTAAAGA CTAGTATCATTAAAAACCCCTGGTTATGATAATTAGGACAATTATTATCA AAATCACAAGCCATCTAGTCTAGTTTCTTTTGTTTTTTGCCCCGACTCCC TTCTCCGTGCAGAGCTGGCATCGAATAGCATTGAATAGGGGGAGGGGGAG GGGGGGAGTGACTAAAACAGCGACAATCATCACACTGAGCGTCAAGTACA GCGTCACTCATTACAGTTTAGTGTTTTGAGTGCAAAACCGTCTGAAGCGT GTATAGCTAGCTAGCTTATGGCGCCGAGAGCTCTAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig12071:2282..5969+

>mRNA_H-elongata_contig12071.1591.1 ID=mRNA_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig12071:2282..5969+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCAGACGGAAGAGCAGTCCCTGCGTAACGCTTGCTCTCGAGACAC
CGTCGACGGCGAGTATACCCCTCCTTGTCGGTTTCCTGAGGACGGTGGGA
GGTCGGAGCTGGCGAGAAATCCTGCCTGTCGGCTGGTCCTGAGCATCCAC
GATGAGCTTCTCTACGAGATGTCCCAGACGGAAGAGCAGTCCCTGCGTAA
CGCTTGCTCTCGAGACACCGTCGACGGCGAGTATACCCCTCCTTGTCGGT
TTCCTGAGGACGGTGGGAGGTCGGAGCTGGCGAGAAATCCTGCCTGTCGG
CTGGTCCTGAGCATCCACGATGAGCTTCTCTACGAGAATGCTGTGAGTTC
GTCTTGAAATGCTGTGAGTTCGTCTTGA
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