mRNA_H-elongata_contig12071.1591.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE) HSP 1 Score: 286 bits (731), Expect = 6.930e-78 Identity = 152/242 (62.81%), Postives = 181/242 (74.79%), Query Frame = 1
Query: 1 LTHRAAAQTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSL----RNACSRDTVDG-------EYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDV 693
+T QTK+VVYGVLYGQSA+ L PQL +SRP A+KIR+TVL +PKL +F+++VK++CK+ G+VETLLGRRRYLP INS+D ER+RAERQAANT QGSAADLLKLAATNVAARLE+C+WMS+ + + RNA + T+ + T PCRFP DGGRSELAR PACRLVLSIHDELLYE VL+PH EVAQ+VK+CMEGA SL VPLVA PR G W SM +
Sbjct: 2077 ITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLNTYPKLTEFLKKVKEDCKECGYVETLLGRRRYLPQINSTDKAERSRAERQAANTTTQGSAADLLKLAATNVAARLERCEWMSRPAAKPICTPSRNAAAGGTLSSALASGTADATVPCRFPRDGGRSELARRPACRLVLSIHDELLYE--------VLEPHVAEVAQIVKACMEGACSLSVPLVAHPRWGTKWGSMAPM 2310
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI) HSP 1 Score: 234 bits (598), Expect = 3.950e-65 Identity = 124/193 (64.25%), Postives = 148/193 (76.68%), Query Frame = 1
Query: 1 LTHRAAAQTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSL-------------RNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYE 540
+T QTK+VVYGVLYGQSA+ L PQL +SRP A+KIR+TVLK FPKL +F+++VK++CK+ G+VETLLGRRRYLP INS+D ER+RAERQAANT QGSAADLLKLAATNVAARLE+C+WMS+ + + +A + T D T PCRFP DGGRS+LAR PACRLVLSIHDELLYE
Sbjct: 277 ITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTFPKLTEFLKKVKEDCKECGYVETLLGRRRYLPQINSTDKAERSRAERQAANTTTQGSAADLLKLAATNVAARLERCEWMSRPAGKPICTPPPNAAAGGTSSSALASGTADA--TVPCRFPRDGGRSQLARRPACRLVLSIHDELLYE 467
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A7S3XVL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVL9_HETAK) HSP 1 Score: 165 bits (417), Expect = 6.540e-42 Identity = 96/225 (42.67%), Postives = 124/225 (55.11%), Query Frame = 1
Query: 28 KVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSAT 702
K V YG+LYG L +LGVS A +++ L+ +P ++DFIRR K C+ RG+VETLLG RRYLP I S +R+RAERQA NTVCQGS ADLLKLA N+ +L K E Q R V P + P CRL+L+IHDEL+YE + +EVA+++K CMEGA+ L VPL + G+ W S+ D T
Sbjct: 88 KQVAYGILYGAGPNALRQELGVSYQEAERMQRRFLETYPGVQDFIRRAKAECRARGYVETLLGHRRYLPDIRSDRPADRSRAERQAVNTVCQGSGADLLKLAMINIHHKLRKVLHAHVGESQHQRRRSIGFPVSASDWDP-------------QKPRCRLLLTIHDELIYEVGIGD--------VKEVAKIIKECMEGAVQLDVPLTVSLQYGRRWGSLRDAPDT 291
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: W7U5L3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5L3_9STRA) HSP 1 Score: 139 bits (350), Expect = 6.730e-30 Identity = 83/221 (37.56%), Postives = 119/221 (53.85%), Query Frame = 1
Query: 22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASM 684
+ K + Y VLYGQS A Q +S A K+ + L +P +R F++ KD CK G++ETLL RRR+LP I+S + ER +AERQ+ N++CQGSAA+++KLA N+ ++LE CR +D L CRLVL IHDEL++E V + EV Q++K CMEGA+ L VPL ++G +W ++
Sbjct: 2033 EAKQLAYAVLYGQSIAATAQQFAISTAEADKLHVSFLNTYPGIRKFLQESKDFCKTHGYIETLLRRRRHLPGIHSRNIYERLQAERQSVNSICQGSAAEVIKLAMINIHSKLEGLH--------------------------CRIKKDS----LGDVRDCRLVLQIHDELIFE--------VKEQMVTEVVQIMKDCMEGALQLNVPLKVHVKVGASWGAL 2215
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A7R9HNF3_9NEOP (DNA-directed DNA polymerase n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9HNF3_9NEOP) HSP 1 Score: 125 bits (315), Expect = 1.110e-28 Identity = 81/225 (36.00%), Postives = 118/225 (52.44%), Query Frame = 1
Query: 22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVS 696
+ K + YG++YG A LA QL V A + KA+P ++ F+ C+++G+VETL GRRRYLP I S++ +++ AERQA N+ QGSAAD+ K A V RL K + + R T D PC + G+ E A LVL +HDELLYE V H E +++KS ME A++L V L + + G +W ++ ++S
Sbjct: 55 RAKQICYGMIYGMGARALAEQLEVEESVAVNFMASFNKAYPGVKKFLSETIAKCRRQGYVETLRGRRRYLPAITGSNSLKKSHAERQAVNSTIQGSAADVAKRAMVLVEQRLSK-----------ILSTSPRKTYD-----PCTRVK--GKREQTNERAASLVLHLHDELLYE--------VSDKHVMEAVRIIKSGMEEAVNLSVKLPVKVKTGNSWGALQEIS 253
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A397YFG0_BRACM (POLAc domain-containing protein n=2 Tax=Brassica TaxID=3705 RepID=A0A397YFG0_BRACM) HSP 1 Score: 129 bits (324), Expect = 1.390e-28 Identity = 81/226 (35.84%), Postives = 124/226 (54.87%), Query Frame = 1
Query: 22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSA 699
QTK ++YG+LYG A LA QL S A + + +FP + ++ C+++G+++TL GRRR+L I +AKE+++A+RQA N+VCQGSAAD++K+A N+ S E +A S T R + + CR++L +HDEL+ E V +A+E A +++S ME A+SLLVPL + +IGKTW S+ + A
Sbjct: 200 QTKRLIYGILYGMGANTLAEQLECSSDEAKEKIRSFKSSFPAVTSWLNETVSFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSVCQGSAADIIKIAMINI---------YSAISEDVNTSASSSSTE--------------ARCHMLKG-RCRILLQVHDELVLE--------VDPSYAKEAAMLLQSSMENAVSLLVPLHVKLKIGKTWGSLEPLQA 393
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A0V0ILC0_SOLCH (Putative ovule protein n=2 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0ILC0_SOLCH) HSP 1 Score: 129 bits (325), Expect = 2.340e-28 Identity = 82/227 (36.12%), Postives = 131/227 (57.71%), Query Frame = 1
Query: 22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSAT 702
QTK +VYG+LYG A+ LA Q+ S A + E+ ++FP + +++ +C+++G++ETL GR+R+L IN ++KE+++A+RQA N++CQGSAAD++K+A N+ + L+ E+SL S VD +F GR CR++L +HDEL+ E S A+E +++ ME A+SLLVPL + +IG TW S+ A+
Sbjct: 251 QTKRLVYGILYGMGAKSLAEQIDCSADEAAERIESFKRSFPGVASWLQEAVTSCREKGYIETLKGRKRFLAKINFGNSKEKSKAQRQAVNSICQGSAADIIKIAMINIHSVLDHF-------EKSL----SHSAVDE------KFHVLKGR--------CRIILQVHDELVLEADPSV--------AKEAGLLLQMSMENAVSLLVPLHVKLKIGSTWGSLEPFQAS 444
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A816XLI8_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816XLI8_BRANA) HSP 1 Score: 133 bits (335), Expect = 4.410e-28 Identity = 84/226 (37.17%), Postives = 125/226 (55.31%), Query Frame = 1
Query: 22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDVSA 699
QTK ++YG+LYG A LA QL S A + + +FP + ++ C+++G+++TL GRRR+L I +AKE+A+A+RQA N+VCQGSAAD++K+A N+ S E S DT + RF GR CR++L +HDEL+ E V +A+E A +++S ME A+SLLVPL + ++GKTW S+ + A
Sbjct: 2167 QTKRLIYGILYGMGANRLAEQLECSSDEAKEKIRSFKSSFPAVTSWLNETVSFCQEKGYIQTLKGRRRFLSKIKFGNAKEKAKAQRQAVNSVCQGSAADIIKIAMINI---------YSAISEDS-------DTAASSSSTETRFHALKGR--------CRILLQVHDELVLE--------VDPSYAKEAAMLLQSSMENAVSLLVPLHVKLKVGKTWGSLEPLQA 2360
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A673ZWZ2_SALTR (DNA-directed DNA polymerase n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673ZWZ2_SALTR) HSP 1 Score: 133 bits (334), Expect = 5.850e-28 Identity = 80/224 (35.71%), Postives = 122/224 (54.46%), Query Frame = 1
Query: 22 QTKVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVKSCMEGAISLLVPLVAQPRIGKTWASMTDV 693
Q K + YG++YG A+ L Q+G+ A E+ + + F++ +C K+GFV+TLLGRRRYLP+IN++ + AERQA NT QGSAAD++KLA N+ + +L + C R EYT C + GR+ + R+ +L +HDEL+YE A + +VAQ+VK ME A+ L V L A+ ++G +W ++ D+
Sbjct: 2202 QAKQICYGIIYGMGAKSLGEQMGIEEDDAGAYIESFKDRYTGIHRFLKETVRSCVKKGFVQTLLGRRRYLPNINTNGYTRKQVAERQAVNTTVQGSAADIVKLATVNI------------QQLNTLSSRCHR-----EYTELCLWSRGHGRA-VQRHRGAFFILQLHDELIYETA--------EEDLIQVAQIVKREMESAVKLYVKLKAKVKVGPSWGNLQDL 2399
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Match: A0A812UX74_SYMMI (TEB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UX74_SYMMI) HSP 1 Score: 122 bits (307), Expect = 6.020e-28 Identity = 80/193 (41.45%), Postives = 108/193 (55.96%), Query Frame = 1
Query: 28 KVVVYGVLYGQSAEGLAPQLGVSRPRAWKIRETVLKAFPKLRDFIRRVKDNCKKRGFVETLLGRRRYLPHINSSDAKERARAERQAANTVCQGSAADLLKLAATNVAARLEKCKWMSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHDELLYENAVSSS*QVLQPHAEEVAQVVK 606
K + Y +LYG +A G S P A + + +P ++ F+ +VK++C+ +G+VETLLGRRR+L I+S++ K+RARAERQA NTVCQGSAADL+KLA N+ RL EE R Y C +P G + AR RLVL +HDEL++E V + H EVA VVK
Sbjct: 61 KQICYALLYGAGPAKVAADAGCSIPEAEGLMRGFMTCYPGIKTFMNQVKNSCRSKGYVETLLGRRRHLRGISSANRKDRARAERQAVNTVCQGSAADLIKLAMINIQHRL--------VEEFGSRG----------YHGHCSYP---GGALYARMDCVRLVLQVHDELVFE--------VEEEHLHEVACVVK 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12071.1591.1 >prot_H-elongata_contig12071.1591.1 ID=prot_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp MSQTEEQSLRNACSRDTVDGEYTPPCRFPEDGGRSELARNPACRLVLSIHback to top mRNA from alignment at H-elongata_contig12071:2282..5969+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12071.1591.1 ID=mRNA_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3688bp|location=Sequence derived from alignment at H-elongata_contig12071:2282..5969+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12071:2282..5969+ >mRNA_H-elongata_contig12071.1591.1 ID=mRNA_H-elongata_contig12071.1591.1|Name=mRNA_H-elongata_contig12071.1591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig12071:2282..5969+ (Himanthalia elongata Himel1 dioecious)back to top |