mRNA_H-elongata_contig82751.15915.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE) HSP 1 Score: 270 bits (691), Expect = 7.460e-89 Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
LQGL +FQGLRGGKTDP MLD+V+VESYGSM+ L++VAQASMKGPQLI+LSVYD MTKA+EDAVREC MGLNP SEGQGQVHVPIPKPTKESREAVAK+AAKHAEKSKVV+RGIRHKI DQIKKKKDSFPED+VH R+KE+DKCT+DAEA MLEKKKAEILTV
Sbjct: 132 LQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILTV 299
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA) HSP 1 Score: 141 bits (355), Expect = 8.610e-38 Identity = 85/177 (48.02%), Postives = 111/177 (62.71%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQG----------QVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILT 501
L+GLK D LRGG+ DPAM D + V SYG LS+VAQ S KGPQL+VL+ YD A AV AVR+ M LNP +G V VPIPK + E+RE++ K+A K EK+KV +RGIRHK+ +++KK K +F ED+VH+R KE+D EA L+ KK +IL+
Sbjct: 158 LEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: UPI001BA79AAC (ribosome recycling factor n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BA79AAC) HSP 1 Score: 123 bits (309), Expect = 1.720e-32 Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK--KKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
++ LK +FQGLR G+ PA+L+ VRVE+YGS++ L+ VA S+ GP L+ + V+D +TKAVE A+RE ++GLNP +EGQ + VP+P T E R + K AA++AE ++V +RG+R +Q K KK EDEV Q E+ K T L K+ +I TV
Sbjct: 20 IETLKKEFQGLRTGRASPALLEPVRVEAYGSVTPLNQVANVSIAGPGLLSVQVWDKGLTKAVESAIREANLGLNPQAEGQ-VIRVPLPPLTAERRNELVKAAARYAESTRVAIRGVRRDGMEQAKGWIKKHEASEDEVKQAETEIQKLTDQYVKQVDASLVDKEKDIRTV 188
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A840XNP9_9PROT (Ribosome-recycling factor n=12 Tax=Roseomonas TaxID=125216 RepID=A0A840XNP9_9PROT) HSP 1 Score: 123 bits (308), Expect = 2.440e-32 Identity = 72/170 (42.35%), Postives = 108/170 (63.53%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK--KKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
++ LK +F GLR G+ PA+L+ +RVE+YGSM+ L+ VA S+ GP L+ + V+D A+TK VE A+RE ++GLNP +EGQ + VP+P T E R +AK AA++AE+++V +RG+R +Q+K KK EDE + E+ K T L +K+ +I TV
Sbjct: 20 METLKKEFAGLRTGRASPALLEPIRVEAYGSMTPLNQVANISVAGPGLLSVQVWDKALTKHVESAIREANLGLNPQAEGQ-VIRVPLPPLTTERRNELAKAAARYAEQTRVAIRGVRRDGMEQVKAWVKKHETSEDEAKRAEDEIQKLTDQYVKQVDAALAEKEKDIRTV 188
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A4R0Y5H3_9PROT (Ribosome-recycling factor n=4 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R0Y5H3_9PROT) HSP 1 Score: 117 bits (292), Expect = 6.540e-30 Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIK--KKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
L+ LK +F GLR G+ P++L+ +RVE+YGS L+ VA S+ GP ++ + V+D ++TKAVE A+R+ +GLNP SEGQ + V +P T++ R +AK AAK++E +KV +RG+R +QI+ KKK ED+ + EV K T D L +K+ +I TV
Sbjct: 22 LETLKKEFAGLRTGRASPSLLEPIRVEAYGSNQPLAQVANVSVAGPSMLQVQVWDRSVTKAVEIAIRDSGLGLNPQSEGQ-TIRVMLPPLTEQRRNELAKTAAKYSEGAKVAIRGVRRDGMEQIQGWKKKSEIGEDDAKRWSDEVQKLTDDYVKKIDVSLAEKEKDIKTV 190
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A841GSD5_9BACT (Ribosome-recycling factor n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841GSD5_9BACT) HSP 1 Score: 115 bits (288), Expect = 2.160e-29 Identity = 64/170 (37.65%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIK--KKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
++ L+ DFQ +R GK +PA+LDSVRVE+YG++ L+ V S P+++ + +D KA+E A+RE D+GLNPS++G V +PIP T++ R K+ K AE+++V +R +R D++K +K D ED++ + +V K T A +M++ K+AE++ V
Sbjct: 15 IEALRRDFQSVRTGKANPALLDSVRVEAYGNLMPLNQVGTVSAPEPRMLTIQPWDKTQIKAIEKALRESDLGLNPSNDGN-LVRIPIPALTEDRRREFVKMLHKMAEEARVAVRQVRKDANDEVKARQKDDGLSEDDIRREQGDVQKLTDQYVAKVEEMVKAKEAEVMEV 183
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: R6HZC7_9PROT (Ribosome-recycling factor n=3 Tax=Azospirillum TaxID=191 RepID=R6HZC7_9PROT) HSP 1 Score: 115 bits (288), Expect = 2.410e-29 Identity = 69/170 (40.59%), Postives = 110/170 (64.71%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK-KKDS-FPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
++ L+ DF LR G+ ++LD + VE+YGSM+ LS V S+ P+ + +S++D ++ KAV+ A+RE D+GLNP+S+GQ + +PIP ++E R+ + KIA K+AE++KV +R IR D +KK KKD+ EDE + E+ K T ++ +ML K+ +IL V
Sbjct: 19 IETLRGDFGSLRAGRAHVSLLDGIMVEAYGSMTPLSQVGTVSVPDPRTLSISIWDRSLAKAVDKALRESDLGLNPASDGQ-LIRIPIPPLSEERRKELVKIAGKYAEQNKVAIRNIRRDALDDVKKLKKDNQISEDEEKRFENEIQKLTDESIKKIEEMLSAKEKDILQV 187
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: UPI001BACEF9D (ribosome recycling factor n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001BACEF9D) HSP 1 Score: 115 bits (288), Expect = 2.610e-29 Identity = 71/172 (41.28%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK----KKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 504
++ L+ +F GLR G+ PA+L+ VRVE+YG S L+ VA S+ GP L+V+ V+D ++TKAVE A+R+ +GLNP +EGQ + VP+P T+E R + K A K+AE S+V +RG+R +++K KK EDE + EV K T +L +K+ +I TV
Sbjct: 20 IETLRKEFAGLRTGRASPALLEPVRVEAYGGNSPLNQVANISVGGPGLLVVQVFDRSLTKAVEVAIRDSGLGLNPQAEGQ-VIRVPLPPLTQERRNDLVKTAHKYAEASRVAIRGVRRDGMERVKAMTADKKAPISEDEGKRTQDEVQKLTDQYIKQVDTLLAEKEKDIKTV 190
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: UPI001080271D (ribosome recycling factor n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001080271D) HSP 1 Score: 114 bits (286), Expect = 5.210e-29 Identity = 63/140 (45.00%), Postives = 95/140 (67.86%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK----KKDSFPEDEV 408
++ L+ +F GLR G+ PA+L+ +RVE+YG +S L+ VA S+ GP L+ + V+D A+ KAVE A+RE ++GLNP +EGQ + VP+P T+E R +AK AA++AE+++V +RG+R +QIK KK EDE
Sbjct: 20 METLRKEFAGLRTGRASPALLEPIRVEAYGGVSPLNQVANISVAGPGLLSVQVWDKALVKAVESAIREANLGLNPQTEGQ-VIRVPLPPLTQERRNELAKAAARYAEQTRVAIRGVRRDGMEQIKALVHDKKAPISEDEA 158
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK) HSP 1 Score: 116 bits (291), Expect = 7.400e-29 Identity = 63/144 (43.75%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVD 432
+Q L D + LR G+ DPAM D ++V++YG + LS VA + +GPQL+V++VYD + AV+ A+REC MGLNP + G + VP+PK +KE RE +A++A + EK+K +R R D+ KK PEDE + +KE+D
Sbjct: 108 IQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKKA--GLPEDESKRLVKEID 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82751.15915.1 >prot_H-elongata_contig82751.15915.1 ID=prot_H-elongata_contig82751.15915.1|Name=mRNA_H-elongata_contig82751.15915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVback to top mRNA from alignment at H-elongata_contig82751:687..2711+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82751.15915.1 ID=mRNA_H-elongata_contig82751.15915.1|Name=mRNA_H-elongata_contig82751.15915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2025bp|location=Sequence derived from alignment at H-elongata_contig82751:687..2711+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82751:687..2711+ >mRNA_H-elongata_contig82751.15915.1 ID=mRNA_H-elongata_contig82751.15915.1|Name=mRNA_H-elongata_contig82751.15915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig82751:687..2711+ (Himanthalia elongata Himel1 dioecious)back to top |