mRNA_H-elongata_contig82675.15912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82675.15912.1
Unique NamemRNA_H-elongata_contig82675.15912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: D7FSE5_ECTSI (Casein kinase II subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE5_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.160e-54
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 1
Query:    1 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
            ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGI DEPKKEAVKLYCPRC DVYNTVSPYGGE
Sbjct:   39 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCCDVYNTVSPYGGE 128          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A6H5KX78_9PHAE (Casein kinase II subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX78_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.080e-53
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 1
Query:    1 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
            ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGI DEPKKEAVKLYCPRC DVYNTVSPYGGE
Sbjct:   73 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCCDVYNTVSPYGGE 162          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A6V1P2G8_HETAK (Casein kinase II subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P2G8_HETAK)

HSP 1 Score: 121 bits (303), Expect = 3.420e-31
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
            D+  DP++AQ+A++LYG+IHARFI T+RGLE MYKKYR  +FGRCPR +CK+Q VVP GI D P KE VK+YCP+C  VY   +  G +
Sbjct:   65 DDNLDPMMAQAAYLLYGLIHARFITTSRGLEVMYKKYRTGDFGRCPRMLCKDQFVVPAGIYDHPNKEKVKVYCPKCGQVYGVPTNPGEQ 153          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: U9SHE8_RHIID (Casein kinase II subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=U9SHE8_RHIID)

HSP 1 Score: 114 bits (284), Expect = 1.460e-29
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
            D+     V +SA  LYG+IHARFI+T+RGL  M +KY+ A+FGRCPR +C NQP++PVG+SD+P  ++VKLYCPRC D+YN  S
Sbjct:   69 DDEMREAVEKSARHLYGLIHARFIITSRGLAKMLEKYKKADFGRCPRVLCHNQPLLPVGLSDQPYTKSVKLYCPRCEDIYNPKS 152          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A2Z6RID5_9GLOM (Casein kinase II subunit beta n=3 Tax=Glomeromycetes TaxID=214506 RepID=A0A2Z6RID5_9GLOM)

HSP 1 Score: 114 bits (284), Expect = 4.150e-29
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
            D+     V +SA  LYG+IHARFI+T+RGL  M +KY+ A+FGRCPR +C NQP++PVG+SD+P  ++VKLYCPRC D+YN  S
Sbjct:  115 DDEMREAVEKSARHLYGLIHARFIITSRGLAKMLEKYKKADFGRCPRVLCHNQPLLPVGLSDQPYTKSVKLYCPRCEDIYNPKS 198          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A397G234_9GLOM (Casein kinase II subunit beta n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G234_9GLOM)

HSP 1 Score: 113 bits (282), Expect = 8.240e-29
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
            D+     V +SA  LYG+IHARFI+T+RGL  M  KY+ A+FGRCPR +C NQP++PVG+SD+P  ++VKLYCPRC D+YN  S
Sbjct:  115 DDEMREAVEKSARHLYGLIHARFIITSRGLAKMLDKYKKADFGRCPRVLCHNQPLLPVGLSDQPYTKSVKLYCPRCEDIYNPKS 198          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A6U2PBT7_9STRA (Casein kinase II subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2PBT7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.960e-28
Identity = 45/80 (56.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVY 243
            +E Q  +V  +A MLYG+IHAR+IVT+RG+ AMY+KYR+A FGRCPR  C+ QPV+PVG+SD P+   V ++CPRC +++
Sbjct:    8 NEEQQEIVESAAEMLYGLIHARYIVTSRGMHAMYEKYRIASFGRCPRVFCQGQPVLPVGMSDLPRNYTVNVFCPRCHELF 87          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A0K9NYU0_ZOSMR (Casein kinase II subunit beta n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NYU0_ZOSMR)

HSP 1 Score: 110 bits (274), Expect = 2.710e-28
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNT 249
            +E  D ++  SA MLYG+IHAR+I+T RGL+AM +K+  A+FG CPR +CKNQ  +PVGISD+P KE +K+YCP C+DVY+T
Sbjct:   92 EEVDDNILKHSAEMLYGLIHARYILTPRGLKAMSEKFENADFGFCPRVLCKNQYCLPVGISDKPHKEFIKIYCPNCQDVYDT 173          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A507ECY4_9FUNG (Casein kinase II subunit beta n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507ECY4_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 2.800e-28
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   25 VAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
            V +SA  LYGMIHARF++TARGL  M  K+R AEFGRCPR +C+NQPV+P G++D P  + VKLYCPRC DVY+ V+
Sbjct:   79 VEKSARQLYGMIHARFVITARGLAKMLDKFRHAEFGRCPRVLCENQPVLPCGLADTPGIKCVKLYCPRCEDVYSPVA 155          
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A1Y2BJB6_9TREE (Casein kinase II subunit beta n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2BJB6_9TREE)

HSP 1 Score: 111 bits (277), Expect = 3.550e-28
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
            D+    VV  SA  LYG+IHAR+IVT+RGL+ M +KYR A+FGRCPR  C +QP++PVG+SD P ++AVKLYCPRC D+Y+  S   G 
Sbjct:   71 DDDLREVVETSARFLYGLIHARYIVTSRGLQKMLEKYRKADFGRCPRVYCYSQPLLPVGLSDIPYQKAVKLYCPRCEDIYSPKSNRHGS 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSE5_ECTSI1.160e-5497.78Casein kinase II subunit beta n=1 Tax=Ectocarpus s... [more]
A0A6H5KX78_9PHAE1.080e-5397.78Casein kinase II subunit beta n=1 Tax=Ectocarpus s... [more]
A0A6V1P2G8_HETAK3.420e-3159.55Casein kinase II subunit beta n=1 Tax=Heterosigma ... [more]
U9SHE8_RHIID1.460e-2958.33Casein kinase II subunit beta n=11 Tax=Eukaryota T... [more]
A0A2Z6RID5_9GLOM4.150e-2958.33Casein kinase II subunit beta n=3 Tax=Glomeromycet... [more]
A0A397G234_9GLOM8.240e-2958.33Casein kinase II subunit beta n=1 Tax=Diversispora... [more]
A0A6U2PBT7_9STRA1.960e-2856.25Casein kinase II subunit beta n=1 Tax=Leptocylindr... [more]
A0A0K9NYU0_ZOSMR2.710e-2858.54Casein kinase II subunit beta n=1 Tax=Zostera mari... [more]
A0A507ECY4_9FUNG2.800e-2863.64Casein kinase II subunit beta n=1 Tax=Powellomyces... [more]
A0A1Y2BJB6_9TREE3.550e-2857.30Casein kinase II subunit beta n=1 Tax=Naematelia e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82675contigH-elongata_contig82675:1140..2549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue3.4e-45
Seed eggNOG ortholog2880.D7FSE5
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
EggNOG free text desc.protein kinase regulator activity
EggNOG OGsCOG5041@1,KOG3092@2759
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCasein kinase II, regulatory subunit
Ec32 orthologEc-25_000900.1
Exons3
Model size270
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82675.15912.1prot_H-elongata_contig82675.15912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82675 1140..2549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931233.2256205-CDS-H-elongata_contig82675:1139..12411622931233.2256205-CDS-H-elongata_contig82675:1139..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82675 1140..1241 +
1691679752.6899238-CDS-H-elongata_contig82675:1139..12411691679752.6899238-CDS-H-elongata_contig82675:1139..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82675 1140..1241 +
1622931233.2528574-CDS-H-elongata_contig82675:1598..16701622931233.2528574-CDS-H-elongata_contig82675:1598..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82675 1599..1670 +
1691679752.7057257-CDS-H-elongata_contig82675:1598..16701691679752.7057257-CDS-H-elongata_contig82675:1598..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82675 1599..1670 +
1622931233.2652197-CDS-H-elongata_contig82675:2453..25491622931233.2652197-CDS-H-elongata_contig82675:2453..2549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82675 2454..2549 +
1691679752.7166262-CDS-H-elongata_contig82675:2453..25491691679752.7166262-CDS-H-elongata_contig82675:2453..2549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82675 2454..2549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82675.15912.1

>prot_H-elongata_contig82675.15912.1 ID=prot_H-elongata_contig82675.15912.1|Name=mRNA_H-elongata_contig82675.15912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTM
CKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE
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mRNA from alignment at H-elongata_contig82675:1140..2549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82675.15912.1 ID=mRNA_H-elongata_contig82675.15912.1|Name=mRNA_H-elongata_contig82675.15912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1410bp|location=Sequence derived from alignment at H-elongata_contig82675:1140..2549+ (Himanthalia elongata Himel1 dioecious)
GCGGACGAACCCCAGGACCCGGTCGTGGCGCAGTCGGCGTTTATGCTGTA CGGGATGATCCACGCGCGCTTCATCGTCACCGCGCGGGGGCTCGAGGCCA TGGTATGTTGGCGTTTTTTTATTGGCGGGGGGAGGCTTGGTGGCGAGACG CTTGACCTTCTGCGATATATGATTCACGCGCGATTTCTATCTTCACTGCG TGGGAACTCCAGTTCTTGCCACAAGAAAAGTATTGCTGCCGTGTACCGAA CTATATTATACTACTTGTATACTAAATGATATGAGCAGGCGTTTTAGTTC GGAGGTTGGGGTCAATCGATCCCGCGCCAGCGTCGCACTACCCTTGTTGT GAGATCGGTGGGATCGATGGTAGTATCCGAAGCCCCCTCTGATTATACGC TCTGATTATACAGTTATGCGTGTTCACTTTTTCGTTCGGTTTGTATTTTT GATTCGCAGTACAAAAAGTACAGACTGGCGGAATTCGGTCGGTGTCCGAG GACGATGTGCAAAAATCAGCCTGTAGTGCCGGTGAGTCTCGTTAGGAACA TCGATGAGTTGTGTTTAGTTTTCGATCATGCGGTATCATGCGGCCGAAAA AGAACATACATACATACATACATACGTAGTGGTAGTAGTGTTTCTCTGAT AGTACAGTACTGTACAGTGCGGGAGACGCCCGCTGGCACAGTGTGTTGCG GCCACCCACCGCCTAATAATCGATACGCTTGCCTGATAATGCAAATGCTG CCTAATTTAATGCTAATGCTACTGCTAATGCCGCTAGTAATGTCGGTCGA AGCCATTAGGGATCTTTGTATTTTTGTCTCCTGCCATATCTTGTGTGGAT GTGTTTTTGACTTTTGACGTGTGCTCGCTCTTATTATTACTTCGTACTAC GTCTTATTATTATTATTATTATTATTATTATTATTATTATCATTATTATT ATTATTATTATTATTATTATTATTAATATTATTATTATTATTATTATTAT TATTATTATTATTATTATTAATATTATTATTAATATTATTATTAATATTA ATATTATTATTATTATTATTATTATTAGTAGTATTATTATTATTTATCTT TTTATTTTAAAAAACCTTAAACTCATTTCAACCCTCCGAACATCCACGCC TTCTTAGGACCATGAAAAGTGTAGTCCAGGGGACCAACTATCATCAGGTT ATAATGTGCATGGATTATTGTTATTGTTATGAATTATTTGTTATTATTTA TTATATTATTATTATTATTCTTCTTCTTCTTCTTCTTAATATATCTATAT AATACCTCCTTCAGGTTGGTATTTCCGACGAGCCCAAGAAGGAGGCCGTG AAGCTGTACTGTCCACGATGCAGAGACGTCTACAACACCGTCAGCCCCTA CGGCGGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig82675:1140..2549+

>mRNA_H-elongata_contig82675.15912.1 ID=mRNA_H-elongata_contig82675.15912.1|Name=mRNA_H-elongata_contig82675.15912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig82675:1140..2549+ (Himanthalia elongata Himel1 dioecious)
GCGGACGAACCCCAGGACCCGGTCGTGGCGCAGTCGGCGTTTATGCTGTA
CGGGATGATCCACGCGCGCTTCATCGTCACCGCGCGGGGGCTCGAGGCCA
TGGCGGACGAACCCCAGGACCCGGTCGTGGCGCAGTCGGCGTTTATGCTG
TACGGGATGATCCACGCGCGCTTCATCGTCACCGCGCGGGGGCTCGAGGC
CATGTACAAAAAGTACAGACTGGCGGAATTCGGTCGGTGTCCGAGGACGA
TGTGCAAAAATCAGCCTGTAGTGCCGTACAAAAAGTACAGACTGGCGGAA
TTCGGTCGGTGTCCGAGGACGATGTGCAAAAATCAGCCTGTAGTGCCGGT
TGGTATTTCCGACGAGCCCAAGAAGGAGGCCGTGAAGCTGTACTGTCCAC
GATGCAGAGACGTCTACAACACCGTCAGCCCCTACGGCGGCGAAGTTGGT
ATTTCCGACGAGCCCAAGAAGGAGGCCGTGAAGCTGTACTGTCCACGATG
CAGAGACGTCTACAACACCGTCAGCCCCTACGGCGGCGAA
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